Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000474.1

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

85444 .. 85959

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000474.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgccatcaacaatattggtggaggaaacatgccatcaacaaccgcctccgacttggaaatctcatcagacccaacttcgacacccggccagttgtatctttatatcattgattggttttcaattaagtagaagatgggatttgtttggtccatatttgaatcggaaagcacacggcaatgacctccatggcttccaatccctttttgttatccaaatctcgccttgctcttgtactaattacaataagaagggattcccacttagacttgcaactgttatttcaatcccttttcaacaacccatcaacggggactacttggaacaagagttcagtggccatggagtcatattcaaaggcattggtgccgattgtgttgctaaggtgaatcttgataacggcagcaaagccatcttgatgttgccaagtggcctaatcacatcctacaaagcttccatgttgcatggtggcactgttgagttgctccaatcttcagtctcccaagaagaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.94

Weight (kDa)

7.04

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AciI	CCGC	1 cut(s)	44
AcoI	YGGCCR	2 cut(s)	87, 337
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	308, 309
AgsI	TTSAA	5 cut(s)	122, 160, 285, 296, 355
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
Alw26I	GTCTC	1 cut(s)	502
AoxI	GGCC	3 cut(s)	87, 337, 430
ApeKI	GCWGC	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	5 cut(s)	13, 42, 129, 311, 419
BceAI	ACGGC	2 cut(s)	190, 415
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	502
BisI	GCNGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	404
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	187, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 309
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	187, 340
BseGI	GGATG	1 cut(s)	440
BseLI	CCNNNNNNNGG	2 cut(s)	308, 309
BseMI	GCAATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	414
BshFI	GGCC	3 cut(s)	89, 339, 432
BshNI	GGYRCC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	308, 309
BsmAI	GTCTC	1 cut(s)	502
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	89, 339, 432
Bsp19I	CCATGG	2 cut(s)	187, 340
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	3 cut(s)	89, 339, 432
BspLI	GGNNCC	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	187, 340
BssT1I	CCWWGG	2 cut(s)	187, 340
Bst4CI	ACNGT	2 cut(s)	277, 475
BstDEI	CTNAG	2 cut(s)	263, 381
BstDSI	CCRYGG	2 cut(s)	187, 340
BstF5I	GGATG	1 cut(s)	440
BstMAI	GTCTC	1 cut(s)	502
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	89, 339, 432
BtgI	CCRYGG	2 cut(s)	187, 340
BtsCI	GGATG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	340, 471
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	234
CspCI	CAANNNNNGTGG	1 cut(s)	35
CviAII	CATG	5 cut(s)	30, 188, 341, 457, 464
CviJI	RGCY	6 cut(s)	89, 192, 339, 410, 432, 452
CviKI_1	RGCY	6 cut(s)	89, 192, 339, 410, 432, 452
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	263, 381
EaeI	YGGCCR	2 cut(s)	87, 337
Eco130I	CCWWGG	2 cut(s)	187, 340
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	187, 340
ErhI	CCWWGG	2 cut(s)	187, 340
FaeI	CATG	5 cut(s)	33, 191, 344, 460, 467
FaiI	YATR	8 cut(s)	31, 104, 154, 189, 342, 350, 458, 465
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	5 cut(s)	29, 187, 340, 456, 463
Fnu4HI	GCNGC	1 cut(s)	403
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	403
HaeIII	GGCC	3 cut(s)	89, 339, 432
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	5 cut(s)	33, 191, 344, 460, 467
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	4 cut(s)	160, 255, 345, 388
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	51, 69, 165
Hpy188III	TCNNGA	2 cut(s)	392, 415
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	277, 475
HpyCH4V	TGCA	2 cut(s)	272, 463
HpyF3I	CTNAG	2 cut(s)	263, 381
Hsp92II	CATG	5 cut(s)	33, 191, 344, 460, 467
LmnI	GCTCC	1 cut(s)	489
LpnPI	CCDG	2 cut(s)	99, 103
Lsp1109I	GCAGC	1 cut(s)	414
MboII	GAAGA	2 cut(s)	144, 483
MlsI	TGGCCA	1 cut(s)	339
MluCI	AATT	2 cut(s)	122, 238
MluNI	TGGCCA	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	16, 57, 194
Mox20I	TGGCCA	1 cut(s)	339
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	339
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	2 cut(s)	177, 416
Msp20I	TGGCCA	1 cut(s)	339
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	86
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	2 cut(s)	187, 340
NlaIII	CATG	5 cut(s)	33, 191, 344, 460, 467
NlaIV	GGNNCC	1 cut(s)	367
NspI	RCATGY	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	160, 255, 388
PkrI	GCNGC	1 cut(s)	404
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
RseI	CAYNNNNRTG	2 cut(s)	177, 416
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	1 cut(s)	403
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	3 cut(s)	186, 387, 454
SinI	GGWCC	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	177, 416
Sse9I	AATT	2 cut(s)	122, 238
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	187, 340
TaaI	ACNGT	2 cut(s)	277, 475
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	122, 238
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	160, 255, 388
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	2 cut(s)	340, 478
TseI	GCWGC	1 cut(s)	402
TspRI	CASTG	2 cut(s)	340, 478
VpaK11BI	GGWCC	1 cut(s)	149
XceI	RCATGY	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.