Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

397747 .. 400108

Gene Structure 2362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G003600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAGCATGGCTTTCAGTCCATTTTTGTTACCCAATTTCAGTCCTTTGTCCACTGCTAGTGCTAAACACATAGATTCTTCTTCTTACCCTTCTTCTCTACCCTCTTTCAGTTTCTTGCAGCTCTACAAAACTAACAGCAACAAGACAGAATTCCCAGTTCCAAAAGTGGCTTCAATCCCATACCAACCCATCAATGTGGACTACTTGGAAGAAGAGTTCAGTGGCCATGGAGTGATATTCAAAGGCATTGGTGACAGCTGTGTGGCCAAGATGGAACTGGAGAATGGTAGTAAAGCCATCATGATGCTGCCAAGTGGCTTAATCACTTCCTACAAGGCTTCCATGTGGCATGGCGGCACGGTTGAATTGCTGCAGGCTTCAGTCTCTGAGTCAGAGGAGAAGAATGAAGGTGCTGCTGCTGCTGCTGGTGTTGCCATTCAAGGAGGGGTGTCTTTAGCCTTTGATTGTGTAAGTGAGGATGAACAAGTTTCATGGTCTCCAACAAATTGGGCTCTTCATGACATTAGAGGAAATCCTCAGCAAGAGATTCAGGTACAACTGATTAGCACTGATTCAGAGGACAAGGTTGAAATCAAATACGTTATCACCCTGAAAGAAGACGTCTTGGTCTCAGAGCTTGTGGTCTCTAACTCTAAATCTTCATCCCTCCAACTAACTGGGTCTATTTTAAGTCATCTGACAGTGAGCTCACCAGATGCAACTTATGCAGTTGGTTTGGAACGATCAGATTTCTTTAGCAGGTTGCCCATTTTGTCAAGTTTCGGGATAATCCCTCCCGACTTTGGCCTAAAAAATGAATCTCAGATCAGCAAACTATGGCAGCAAATGGCACAAAAAACATTTATGCCTGTCTGGGGTCCAAAGACTCAAAACGATGATGGCAATGAAGCAGAGAGAAACCAAAGAGAAAATGAAGAAGAAATGGAGGGTGAAGAAGATGACAACTACAAGCATTTAAGAGACCAAATGAGTCGAATATACACCAGCGCGCCTACCGACTTCACAATCATTGACAGGGGTAGAAGAAACTCTGTCATAGTAGGAAGAGATGGGTTTGATGAACTATACATGTTCAGTCCTGGCTCAAGTCATGAAGACTATGGCAAATATTCATATATATGCGTCGGCCAATCAGCGGTTCTCAAGCCAGTAATTGTGGGTCCTAATGAATCATGGAGGGGTGGACAGCGCTTATACAACCCAAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

411

Amino Acids

45.28

Weight (kDa)

4.75

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	626
AatII	GACGTC	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	750
AccII	CGCG	1 cut(s)	1010
AciI	CCGC	2 cut(s)	354, 1157
AcoI	YGGCCR	3 cut(s)	223, 264, 1147
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	1 cut(s)	555
AfeI	AGCGCT	1 cut(s)	1211
AfiI	CCNNNNNNNGG	3 cut(s)	803, 875, 1156
AflIII	ACRYGT	1 cut(s)	1089
AgsI	TTSAA	5 cut(s)	174, 241, 365, 440, 590
AjnI	CCWGG	1 cut(s)	1099
AjuI	GAANNNNNNNTTGG	4 cut(s)	154, 186, 1143, 1175
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
AluBI	AGCT	4 cut(s)	121, 258, 637, 708
AluI	AGCT	4 cut(s)	121, 258, 637, 708
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	5 cut(s)	388, 501, 634, 649, 975
AlwNI	CAGNNNCTG	1 cut(s)	386
Aor51HI	AGCGCT	1 cut(s)	1211
AoxI	GGCC	4 cut(s)	223, 264, 805, 1147
ApeKI	GCWGC	8 cut(s)	118, 307, 370, 413, 416, 419, 422, 841
ApoI	RAATTY	1 cut(s)	149
AspLEI	GCGC	3 cut(s)	1010, 1012, 1212
AspS9I	GGNCC	2 cut(s)	878, 1181
AsuHPI	GGTGA	4 cut(s)	263, 598, 702, 962
AvaII	GGWCC	2 cut(s)	878, 1181
BalI	TGGCCA	2 cut(s)	225, 266
BanII	GRGCYC	2 cut(s)	514, 710
BbsI	GAAGAC	2 cut(s)	624, 1122
Bbv12I	GWGCWC	1 cut(s)	710
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	8 cut(s)	130, 294, 357, 400, 403, 406, 409, 853
BccI	CCATC	5 cut(s)	197, 265, 305, 893, 1064
BciT130I	CCWGG	1 cut(s)	1101
BcoDI	GTCTC	5 cut(s)	388, 501, 634, 649, 975
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	1213
BfuAI	ACCTGC	1 cut(s)	750
BisI	GCNGC	9 cut(s)	119, 308, 355, 371, 414, 417, 420, 423, 842
BlsI	GCNGC	9 cut(s)	120, 309, 356, 372, 415, 418, 421, 424, 843
Bme1390I	CCNGG	1 cut(s)	1101
Bme18I	GGWCC	2 cut(s)	878, 1181
BmgT120I	GGNCC	2 cut(s)	878, 1181
BmiI	GGNNCC	2 cut(s)	879, 1182
BmrFI	CCNGG	1 cut(s)	1101
BmrI	ACTGGG	2 cut(s)	149, 687
BmsI	GCATC	2 cut(s)	294, 706
BmuI	ACTGGG	2 cut(s)	149, 687
BpiI	GAAGAC	2 cut(s)	624, 1122
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	1090, 1148
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	4 cut(s)	501, 634, 649, 975
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	803, 875, 1156
Bse1I	ACTGG	4 cut(s)	155, 282, 682, 1169
Bse3DI	GCAATG	1 cut(s)	910
BseBI	CCWGG	1 cut(s)	1101
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	2 cut(s)	484, 662
BseLI	CCNNNNNNNGG	3 cut(s)	803, 875, 1156
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	4 cut(s)	378, 551, 645, 836
BseNI	ACTGG	4 cut(s)	155, 282, 682, 1169
BsePI	GCGCGC	1 cut(s)	1008
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	8 cut(s)	130, 294, 357, 400, 403, 406, 409, 853
Bsh1236I	CGCG	1 cut(s)	1010
BshFI	GGCC	4 cut(s)	225, 266, 807, 1149
BsiHKAI	GWGCWC	1 cut(s)	710
BslI	CCNNNNNNNGG	3 cut(s)	803, 875, 1156
BsmAI	GTCTC	5 cut(s)	388, 501, 634, 649, 975
BsnI	GGCC	4 cut(s)	225, 266, 807, 1149
Bso31I	GGTCTC	4 cut(s)	501, 634, 649, 975
Bsp1286I	GDGCHC	2 cut(s)	514, 710
Bsp143I	GATC	2 cut(s)	743, 825
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	2 cut(s)	354, 1157
BspANI	GGCC	4 cut(s)	225, 266, 807, 1149
BspCNI	CTCAG	4 cut(s)	379, 550, 644, 835
BspFNI	CGCG	1 cut(s)	1010
BspHI	TCATGA	3 cut(s)	300, 517, 1111
BspLI	GGNNCC	2 cut(s)	879, 1182
BspMAI	CTGCAG	1 cut(s)	375
BspMI	ACCTGC	1 cut(s)	750
BspQI	GCTCTTC	1 cut(s)	519
BspTNI	GGTCTC	4 cut(s)	501, 634, 649, 975
BsrDI	GCAATG	1 cut(s)	910
BsrI	ACTGG	4 cut(s)	155, 282, 682, 1169
BssECI	CCNNGG	1 cut(s)	226
BssHII	GCGCGC	1 cut(s)	1008
BssMI	GATC	2 cut(s)	743, 825
BssNI	GRCGYC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	1101
Bst4CI	ACNGT	2 cut(s)	361, 703
Bst6I	CTCTTC	3 cut(s)	207, 519, 1060
BstACI	GRCGYC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	375, 1010
BstDEI	CTNAG	4 cut(s)	387, 537, 631, 822
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	484, 662
BstFNI	CGCG	1 cut(s)	1010
BstH2I	RGCGCY	1 cut(s)	1213
BstHHI	GCGC	3 cut(s)	1010, 1012, 1212
BstKTI	GATC	2 cut(s)	746, 828
BstMAI	GTCTC	5 cut(s)	388, 501, 634, 649, 975
BstMBI	GATC	2 cut(s)	743, 825
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 422, 431, 725
BstNI	CCWGG	1 cut(s)	1101
BstNSI	RCATGY	1 cut(s)	1093
BstSCI	CCNGG	1 cut(s)	1099
BstSFI	CTRYAG	1 cut(s)	371
BstUI	CGCG	1 cut(s)	1010
BstV1I	GCAGC	8 cut(s)	130, 294, 357, 400, 403, 406, 409, 853
BstV2I	GAAGAC	2 cut(s)	624, 1122
BstXI	CCANNNNNNTGG	3 cut(s)	196, 507, 677
BsuRI	GGCC	4 cut(s)	225, 266, 807, 1149
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	484, 662
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	4 cut(s)	51, 226, 567, 708
BveI	ACCTGC	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	375, 1010
CaiI	CAGNNNCTG	1 cut(s)	386
CciI	TCATGA	3 cut(s)	300, 517, 1111
CfoI	GCGC	3 cut(s)	1010, 1012, 1212
Cfr13I	GGNCC	2 cut(s)	878, 1181
CseI	GACGC	1 cut(s)	1132
Csp6I	GTAC	1 cut(s)	554
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	4 cut(s)	387, 537, 631, 822
DpnI	GATC	2 cut(s)	745, 827
DpnII	GATC	2 cut(s)	743, 825
DrdI	GACNNNNNNGTC	1 cut(s)	626
DseDI	GACNNNNNNGTC	1 cut(s)	626
EaeI	YGGCCR	3 cut(s)	223, 264, 1147
Eam1104I	CTCTTC	3 cut(s)	207, 519, 1060
EarI	CTCTTC	3 cut(s)	207, 519, 1060
Ecl136II	GAGCTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	514, 710
Eco31I	GGTCTC	4 cut(s)	501, 634, 649, 975
Eco47I	GGWCC	2 cut(s)	878, 1181
Eco47III	AGCGCT	1 cut(s)	1211
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	1181
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	1099
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	514, 710
ErhI	CCWWGG	1 cut(s)	226
Fnu4HI	GCNGC	9 cut(s)	119, 308, 355, 371, 414, 417, 420, 423, 842
FokI	GGATG	2 cut(s)	491, 649
FriOI	GRGCYC	2 cut(s)	514, 710
Fsp4HI	GCNGC	9 cut(s)	119, 308, 355, 371, 414, 417, 420, 423, 842
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	3 cut(s)	1009, 1011, 1211
GluI	GCNGC	9 cut(s)	119, 308, 355, 371, 414, 417, 420, 423, 842
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	1213
HaeIII	GGCC	4 cut(s)	225, 266, 807, 1149
HgaI	GACGC	1 cut(s)	1132
HhaI	GCGC	3 cut(s)	1010, 1012, 1212
Hin1I	GRCGYC	1 cut(s)	621
Hin6I	GCGC	3 cut(s)	1008, 1010, 1210
HinP1I	GCGC	3 cut(s)	1008, 1010, 1210
HinfI	GANTC	8 cut(s)	74, 389, 547, 572, 818, 886, 991, 1190
HphI	GGTGA	4 cut(s)	263, 598, 702, 962
Hpy166II	GTNNAC	3 cut(s)	51, 199, 1205
Hpy188I	TCNGA	7 cut(s)	388, 394, 577, 634, 699, 748, 825
Hpy188III	TCNNGA	5 cut(s)	301, 518, 784, 797, 1112
Hpy8I	GTNNAC	3 cut(s)	51, 199, 1205
Hpy99I	CGWCG	1 cut(s)	1148
HpyAV	CCTTC	2 cut(s)	99, 401
HpyCH4III	ACNGT	2 cut(s)	361, 703
HpyCH4IV	ACGT	2 cut(s)	600, 621
HpyCH4V	TGCA	4 cut(s)	118, 373, 719, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 422, 431, 725
HpyF3I	CTNAG	4 cut(s)	387, 537, 631, 822
HpySE526I	ACGT	2 cut(s)	600, 621
Hsp92I	GRCGYC	1 cut(s)	621
HspAI	GCGC	3 cut(s)	1008, 1010, 1210
Kzo9I	GATC	2 cut(s)	743, 825
LguI	GCTCTTC	1 cut(s)	519
Lsp1109I	GCAGC	8 cut(s)	130, 294, 357, 400, 403, 406, 409, 853
LweI	GCATC	2 cut(s)	294, 706
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	600, 621
MaeIII	GTNAC	2 cut(s)	27, 251
MalI	GATC	2 cut(s)	745, 827
MboI	GATC	2 cut(s)	743, 825
MhlI	GDGCHC	2 cut(s)	514, 710
MlsI	TGGCCA	2 cut(s)	225, 266
MluCI	AATT	5 cut(s)	34, 149, 365, 505, 1173
MluNI	TGGCCA	2 cut(s)	225, 266
MlyI	GAGTC	3 cut(s)	398, 880, 1000
MmeI	TCCRAC	2 cut(s)	524, 694
Mox20I	TGGCCA	2 cut(s)	225, 266
MscI	TGGCCA	2 cut(s)	225, 266
MseI	TTAA	4 cut(s)	320, 689, 977, 1231
MslI	CAYNNNNRTG	3 cut(s)	194, 302, 1138
Msp20I	TGGCCA	2 cut(s)	225, 266
MspA1I	CMGCKG	2 cut(s)	258, 1157
MspR9I	CCNGG	1 cut(s)	1101
MvaI	CCWGG	1 cut(s)	1101
MvnI	CGCG	1 cut(s)	1010
MwoI	GCNNNNNNNGC	4 cut(s)	419, 422, 431, 725
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	743, 825
NlaIV	GGNNCC	2 cut(s)	879, 1182
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	1093
PagI	TCATGA	3 cut(s)	300, 517, 1111
PauI	GCGCGC	1 cut(s)	1008
PciI	ACATGT	1 cut(s)	1089
PciSI	GCTCTTC	1 cut(s)	519
PfeI	GAWTC	5 cut(s)	74, 547, 572, 818, 1190
PkrI	GCNGC	9 cut(s)	120, 309, 356, 372, 415, 418, 421, 424, 843
PleI	GAGTC	3 cut(s)	397, 880, 999
PpsI	GAGTC	3 cut(s)	397, 880, 999
PpuMI	RGGWCCY	1 cut(s)	1181
PscI	ACATGT	1 cut(s)	1089
Psp124BI	GAGCTC	1 cut(s)	710
Psp5II	RGGWCCY	1 cut(s)	1181
Psp6I	CCWGG	1 cut(s)	1099
PspGI	CCWGG	1 cut(s)	1099
PspN4I	GGNNCC	2 cut(s)	879, 1182
PspPI	GGNCC	2 cut(s)	878, 1181
PspPPI	RGGWCCY	1 cut(s)	1181
PstI	CTGCAG	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	386
PteI	GCGCGC	1 cut(s)	1008
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
RseI	CAYNNNNRTG	3 cut(s)	194, 302, 1138
SacI	GAGCTC	1 cut(s)	710
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	4 cut(s)	320, 689, 977, 1231
SatI	GCNGC	9 cut(s)	119, 308, 355, 371, 414, 417, 420, 423, 842
Sau3AI	GATC	2 cut(s)	743, 825
Sau96I	GGNCC	2 cut(s)	878, 1181
SchI	GAGTC	3 cut(s)	398, 880, 1000
ScrFI	CCNGG	1 cut(s)	1101
SduI	GDGCHC	2 cut(s)	514, 710
SfaNI	GCATC	2 cut(s)	294, 706
SfcI	CTRYAG	1 cut(s)	371
SinI	GGWCC	2 cut(s)	878, 1181
SmiMI	CAYNNNNRTG	3 cut(s)	194, 302, 1138
SmlI	CTYRAG	2 cut(s)	1105, 1163
SmoI	CTYRAG	2 cut(s)	1105, 1163
Sse9I	AATT	5 cut(s)	34, 149, 365, 505, 1173
SsiI	CCGC	2 cut(s)	354, 1157
SspI	AATATT	1 cut(s)	1130
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	1099
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	361, 703
TaiI	ACGT	2 cut(s)	603, 624
TaqI	TCGA	1 cut(s)	994
TasI	AATT	5 cut(s)	34, 149, 365, 505, 1173
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	5 cut(s)	74, 547, 572, 818, 1190
Tru1I	TTAA	4 cut(s)	320, 689, 977, 1231
Tru9I	TTAA	4 cut(s)	320, 689, 977, 1231
TscAI	CASTG	4 cut(s)	58, 226, 574, 708
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	8 cut(s)	118, 307, 370, 413, 416, 419, 422, 841
Tsp45I	GTSAC	1 cut(s)	251
TspRI	CASTG	4 cut(s)	58, 226, 574, 708
VpaK11BI	GGWCC	2 cut(s)	878, 1181
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	1093
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	57
ZraI	GACGTC	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.