Rh3CG369000

photosynthetic electron transport in photosystem I

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
46819446 .. 46820810
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG369000.1

Sequence Viewer

Length: 1143 bp
ATGGCAATGACCACCGTGGCTTCCGGTCCATTTTTGTTATCCAAATCCCGCCCTTGCTCTTGTACTAATTACAACAAGAGGGGATTCCCACTTAGAGTTGCAGCTGTTGCTTCAATCCCATTTCAACAACCCATCAACGTGGACTACCTGGAACAAGAGTTCAGTGGCCGTGGAGTGGTATTCAAAGGCATTGGTGACGATTGCGTTGCCAAGATGAGTCTTGATAATGGCAGCAAAGCCATCTTGATGCTGCCAAGTGGCCTAATCGCGTCCTACAAAGCCTCCATGTGGCATGGTGGCACTGTTGAGTTGCTCCAATCTTCAGTCTCCCAAGAAGAAGAAGAAGAAGAAGAAGCCAATAGCATCCGAGGAGGGGTGTCTGTGGCTTTGGAATGTCTCAGTCTCAGTCTCGATCAAGAACAAGTTTCATGGTCTCCAAGTAATTGGGCTCTTCATGACATCACAGGAAATCCTCAGGACTCTATTCAGGTAGAACTGATCAGCACTGATTCCCATGACATGGTTCAAGTCAAGTACATTGTGACTCTCCAAGACGACGTCCTAATCTCACAGCTTATGGTCTCTAATAACTCTGATTCTTCGTCACTCCAACTAAGTGGGTGTATTTTAAGCCATCTGACAGTAAGCTCACCAGACGCTACTTACGCAGTTGGTTTGGAAAGATCAGATTTCTTTGGCAGGTTACCCATTTTGACAGGTTCAGCTATAATTCCTCCAGATTGTGGCCAGAAAAGTGAATCTCAATTCAGCCAACTATGGAAACAAATGACATCCAATGGTTGGGGTCCTAAGAATGGCCACCAAACAGAAACTGAACAAGAAGAAGAAATGGAGCAAGGGGAAGAAGATGACAATTATAAGAACTTAAGGGAGCAAATGTGTCGAATATACACCAGTGCGCCTCGAGACTTCACAATCATTGACAGGGGTAGACGAAACTCAGTGGTGGTTGGAAGAGATGGGTTTGAAGAGCTATACATGTTCAGCCCTGGCTCAAGTCATGAATTCTACGGCGAATATGCTTATATCTGCATTGGCCAGTCGGCAGTGCTCAATCCAATAATCTTGGGGCCTAAGGAATCATGGACAGGTGGACAGCGCTTACACAATCCAAATCTCTAA

Protein Analysis

380

Amino Acids

41.85

Weight (kDa)

4.65

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
AatII GACGTC 1 cut(s) 561
Acc36I ACCTGC 1 cut(s) 690
AccB7I CCANNNNNTGG 3 cut(s) 520, 743, 801
AccI GTMKAC 1 cut(s) 952
AccII CGCG 1 cut(s) 269
AciI CCGC 1 cut(s) 49
AcoI YGGCCR 4 cut(s) 166, 745, 817, 1057
AcsI RAATTY 1 cut(s) 1025
AcuI CTGAAG 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 558
AfaI GTAC 2 cut(s) 64, 536
AfeI AGCGCT 1 cut(s) 1121
AfiI CCNNNNNNNGG 7 cut(s) 175, 288, 373, 520, 743, 801, 815
AflII CTTAAG 1 cut(s) 886
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 5 cut(s) 114, 125, 184, 527, 989
AjnI CCWGG 2 cut(s) 147, 1009
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 5 cut(s) 104, 574, 648, 725, 994
AluI AGCT 5 cut(s) 104, 574, 648, 725, 994
Alw21I GWGCWC 1 cut(s) 1074
Alw26I GTCTC 7 cut(s) 331, 401, 407, 413, 438, 586, 921
AlwNI CAGNNNCTG 1 cut(s) 833
Ama87I CYCGRG 1 cut(s) 924
Aor51HI AGCGCT 1 cut(s) 1121
AoxI GGCC 6 cut(s) 166, 259, 745, 817, 1057, 1091
ApeKI GCWGC 3 cut(s) 101, 231, 250
ApoI RAATTY 1 cut(s) 1025
AspLEI GCGC 2 cut(s) 922, 1122
AspS9I GGNCC 3 cut(s) 26, 806, 1091
AsuHPI GGTGA 2 cut(s) 206, 642
AvaI CYCGRG 1 cut(s) 924
AvaII GGWCC 2 cut(s) 26, 806
AxyI CCTNAGG 2 cut(s) 474, 1095
BalI TGGCCA 3 cut(s) 747, 819, 1059
BanII GRGCYC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 1074
BbvI GCAGC 3 cut(s) 113, 237, 243
BccI CCATC 4 cut(s) 140, 248, 642, 974
BceAI ACGGC 2 cut(s) 153, 1048
BcgI CGANNNNNNTGC 4 cut(s) 188, 222, 884, 918
BciT130I CCWGG 2 cut(s) 149, 1011
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 7 cut(s) 331, 401, 407, 413, 438, 586, 921
BfoI RGCGCY 1 cut(s) 1123
BfrI CTTAAG 1 cut(s) 886
BfuAI ACCTGC 1 cut(s) 690
BisI GCNGC 3 cut(s) 102, 232, 251
BlsI GCNGC 3 cut(s) 103, 233, 252
Bme1390I CCNGG 2 cut(s) 149, 1011
Bme18I GGWCC 2 cut(s) 26, 806
BmeT110I CYCGRG 1 cut(s) 924
BmgT120I GGNCC 3 cut(s) 26, 806, 1091
BmiI GGNNCC 2 cut(s) 807, 1092
BmrFI CCNGG 2 cut(s) 149, 1011
BmsI GCATC 2 cut(s) 237, 372
BpmI CTGGAG 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 1000
BsaHI GRCGYC 1 cut(s) 558
BsaI GGTCTC 2 cut(s) 438, 586
BsaJI CCNNGG 4 cut(s) 15, 169, 367, 1009
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 884, 914
Bsc4I CCNNNNNNNGG 7 cut(s) 175, 288, 373, 520, 743, 801, 815
Bse1I ACTGG 2 cut(s) 915, 1060
Bse21I CCTNAGG 2 cut(s) 474, 1095
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 149, 1011
BseDI CCNNGG 4 cut(s) 15, 169, 367, 1009
BseGI GGATG 2 cut(s) 363, 791
BseLI CCNNNNNNNGG 7 cut(s) 175, 288, 373, 520, 743, 801, 815
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 4 cut(s) 412, 418, 488, 975
BseNI ACTGG 2 cut(s) 915, 1060
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 113, 237, 243
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 6 cut(s) 168, 261, 747, 819, 1059, 1093
BsiHKAI GWGCWC 1 cut(s) 1074
BsiHKCI CYCGRG 1 cut(s) 924
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 7 cut(s) 175, 288, 373, 520, 743, 801, 815
BsmAI GTCTC 7 cut(s) 331, 401, 407, 413, 438, 586, 921
BsnI GGCC 6 cut(s) 168, 261, 747, 819, 1059, 1093
Bso31I GGTCTC 2 cut(s) 438, 586
BsoBI CYCGRG 1 cut(s) 924
Bsp1286I GDGCHC 2 cut(s) 451, 1074
Bsp143I GATC 3 cut(s) 412, 498, 683
BspACI CCGC 1 cut(s) 49
BspANI GGCC 6 cut(s) 168, 261, 747, 819, 1059, 1093
BspCNI CTCAG 4 cut(s) 411, 417, 487, 974
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 2 cut(s) 454, 1021
BspLI GGNNCC 2 cut(s) 807, 1092
BspMI ACCTGC 1 cut(s) 690
BspQI GCTCTTC 2 cut(s) 456, 984
BspTI CTTAAG 1 cut(s) 886
BspTNI GGTCTC 2 cut(s) 438, 586
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 915, 1060
BssECI CCNNGG 4 cut(s) 15, 169, 367, 1009
BssMI GATC 3 cut(s) 412, 498, 683
BssNI GRCGYC 1 cut(s) 558
Bst2UI CCWGG 2 cut(s) 149, 1011
Bst4CI ACNGT 3 cut(s) 16, 304, 643
Bst6I CTCTTC 3 cut(s) 456, 970, 984
BstACI GRCGYC 1 cut(s) 558
BstAFI CTTAAG 1 cut(s) 886
BstAPI GCANNNNNTGC 1 cut(s) 107
BstDEI CTNAG 8 cut(s) 92, 398, 404, 474, 614, 810, 961, 1095
BstDSI CCRYGG 2 cut(s) 15, 169
BstEII GGTNACC 1 cut(s) 702
BstF5I GGATG 2 cut(s) 363, 791
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 1123
BstHHI GCGC 2 cut(s) 922, 1122
BstKTI GATC 3 cut(s) 415, 501, 686
BstMAI GTCTC 7 cut(s) 331, 401, 407, 413, 438, 586, 921
BstMBI GATC 3 cut(s) 412, 498, 683
BstMWI GCNNNNNNNGC 2 cut(s) 107, 665
BstNI CCWGG 2 cut(s) 149, 1011
BstNSI RCATGY 1 cut(s) 1003
BstPI GGTNACC 1 cut(s) 702
BstSCI CCNGG 2 cut(s) 147, 1009
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 113, 237, 243
BstXI CCANNNNNNTGG 3 cut(s) 139, 444, 617
Bsu36I CCTNAGG 2 cut(s) 474, 1095
BsuRI GGCC 6 cut(s) 168, 261, 747, 819, 1059, 1093
BtgI CCRYGG 2 cut(s) 15, 169
BtsCI GGATG 2 cut(s) 363, 791
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 6 cut(s) 169, 300, 504, 922, 969, 1074
BveI ACCTGC 1 cut(s) 690
CaiI CAGNNNCTG 1 cut(s) 833
CciI TCATGA 2 cut(s) 454, 1021
CfoI GCGC 2 cut(s) 922, 1122
Cfr13I GGNCC 3 cut(s) 26, 806, 1091
CseI GACGC 2 cut(s) 258, 665
Csp6I GTAC 2 cut(s) 63, 535
CviAII CATG 9 cut(s) 286, 293, 429, 455, 515, 520, 1000, 1022, 1104
CviQI GTAC 2 cut(s) 63, 535
DdeI CTNAG 8 cut(s) 92, 398, 404, 474, 614, 810, 961, 1095
DpnI GATC 3 cut(s) 414, 500, 685
DpnII GATC 3 cut(s) 412, 498, 683
EaeI YGGCCR 4 cut(s) 166, 745, 817, 1057
Eam1104I CTCTTC 3 cut(s) 456, 970, 984
EarI CTCTTC 3 cut(s) 456, 970, 984
Eco24I GRGCYC 1 cut(s) 451
Eco31I GGTCTC 2 cut(s) 438, 586
Eco47I GGWCC 2 cut(s) 26, 806
Eco47III AGCGCT 1 cut(s) 1121
Eco57I CTGAAG 1 cut(s) 306
Eco81I CCTNAGG 2 cut(s) 474, 1095
Eco88I CYCGRG 1 cut(s) 924
Eco91I GGTNACC 1 cut(s) 702
EcoO109I RGGNCCY 2 cut(s) 806, 1091
EcoO65I GGTNACC 1 cut(s) 702
EcoRI GAATTC 1 cut(s) 1025
EcoRII CCWGG 2 cut(s) 147, 1009
EcoT38I GRGCYC 1 cut(s) 451
FaeI CATG 9 cut(s) 289, 296, 432, 458, 518, 523, 1003, 1025, 1107
FatI CATG 9 cut(s) 285, 292, 428, 454, 514, 519, 999, 1021, 1103
FauI CCCGC 1 cut(s) 56
FbaI TGATCA 1 cut(s) 498
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 3 cut(s) 102, 232, 251
FokI GGATG 2 cut(s) 350, 778
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 3 cut(s) 102, 232, 251
GlaI GCGC 2 cut(s) 921, 1121
GluI GCNGC 3 cut(s) 102, 232, 251
GsuI CTGGAG 1 cut(s) 720
HaeII RGCGCY 1 cut(s) 1123
HaeIII GGCC 6 cut(s) 168, 261, 747, 819, 1059, 1093
HapII CCGG 1 cut(s) 24
HgaI GACGC 2 cut(s) 258, 665
HhaI GCGC 2 cut(s) 922, 1122
Hin1I GRCGYC 1 cut(s) 558
Hin1II CATG 9 cut(s) 289, 296, 432, 458, 518, 523, 1003, 1025, 1107
Hin6I GCGC 2 cut(s) 920, 1120
HinP1I GCGC 2 cut(s) 920, 1120
HinfI GANTC 8 cut(s) 84, 217, 479, 509, 544, 596, 758, 1100
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 206, 642
Hpy166II GTNNAC 3 cut(s) 142, 953, 1115
Hpy188I TCNGA 4 cut(s) 368, 595, 639, 688
Hpy188III TCNNGA 9 cut(s) 221, 244, 410, 416, 455, 476, 737, 926, 1022
Hpy8I GTNNAC 3 cut(s) 142, 953, 1115
Hpy99I CGWCG 1 cut(s) 560
HpyCH4III ACNGT 3 cut(s) 16, 304, 643
HpyCH4IV ACGT 2 cut(s) 138, 558
HpyCH4V TGCA 2 cut(s) 101, 1053
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 665
HpyF3I CTNAG 8 cut(s) 92, 398, 404, 474, 614, 810, 961, 1095
HpySE526I ACGT 2 cut(s) 138, 558
Hsp92I GRCGYC 1 cut(s) 558
Hsp92II CATG 9 cut(s) 289, 296, 432, 458, 518, 523, 1003, 1025, 1107
HspAI GCGC 2 cut(s) 920, 1120
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 3 cut(s) 412, 498, 683
LguI GCTCTTC 2 cut(s) 456, 984
LmnI GCTCC 3 cut(s) 318, 853, 892
Lsp1109I GCAGC 3 cut(s) 113, 237, 243
LweI GCATC 2 cut(s) 237, 372
MaeII ACGT 2 cut(s) 138, 558
MaeIII GTNAC 4 cut(s) 194, 541, 603, 702
MalI GATC 3 cut(s) 414, 500, 685
MboI GATC 3 cut(s) 412, 498, 683
MhlI GDGCHC 2 cut(s) 451, 1074
MlsI TGGCCA 3 cut(s) 747, 819, 1059
MluCI AATT 6 cut(s) 67, 442, 729, 764, 874, 1025
MluNI TGGCCA 3 cut(s) 747, 819, 1059
MlyI GAGTC 3 cut(s) 226, 473, 538
MmeI TCCRAC 2 cut(s) 634, 952
MnlI CCTC 7 cut(s) 72, 292, 362, 365, 483, 744, 933
Mox20I TGGCCA 3 cut(s) 747, 819, 1059
MscI TGGCCA 3 cut(s) 747, 819, 1059
MseI TTAA 2 cut(s) 629, 887
MslI CAYNNNNRTG 2 cut(s) 137, 245
Msp20I TGGCCA 3 cut(s) 747, 819, 1059
MspA1I CMGCKG 1 cut(s) 104
MspCI CTTAAG 1 cut(s) 886
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 149, 1011
MvaI CCWGG 2 cut(s) 149, 1011
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 107, 665
NdeII GATC 3 cut(s) 412, 498, 683
NlaIII CATG 9 cut(s) 289, 296, 432, 458, 518, 523, 1003, 1025, 1107
NlaIV GGNNCC 2 cut(s) 807, 1092
NmuCI GTSAC 3 cut(s) 194, 541, 603
NspI RCATGY 1 cut(s) 1003
PaeR7I CTCGAG 1 cut(s) 924
PagI TCATGA 2 cut(s) 454, 1021
PciI ACATGT 1 cut(s) 999
PciSI GCTCTTC 2 cut(s) 456, 984
PfeI GAWTC 5 cut(s) 84, 509, 596, 758, 1100
PflFI GACNNNGTC 1 cut(s) 557
PflMI CCANNNNNTGG 3 cut(s) 520, 743, 801
PkrI GCNGC 3 cut(s) 103, 233, 252
PleI GAGTC 3 cut(s) 225, 473, 538
PpsI GAGTC 3 cut(s) 225, 473, 538
PpuMI RGGWCCY 1 cut(s) 806
PscI ACATGT 1 cut(s) 999
PsiI TTATAA 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 147, 1009
PspEI GGTNACC 1 cut(s) 702
PspGI CCWGG 2 cut(s) 147, 1009
PspN4I GGNNCC 2 cut(s) 807, 1092
PspPI GGNCC 3 cut(s) 26, 806, 1091
PspPPI RGGWCCY 1 cut(s) 806
PstNI CAGNNNCTG 1 cut(s) 833
PsyI GACNNNGTC 1 cut(s) 557
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 2 cut(s) 64, 536
RsaNI GTAC 2 cut(s) 63, 535
RseI CAYNNNNRTG 2 cut(s) 137, 245
SapI GCTCTTC 2 cut(s) 456, 984
SaqAI TTAA 2 cut(s) 629, 887
SatI GCNGC 3 cut(s) 102, 232, 251
Sau3AI GATC 3 cut(s) 412, 498, 683
Sau96I GGNCC 3 cut(s) 26, 806, 1091
SchI GAGTC 3 cut(s) 226, 473, 538
ScrFI CCNGG 2 cut(s) 149, 1011
SduI GDGCHC 2 cut(s) 451, 1074
SfaNI GCATC 2 cut(s) 237, 372
Sfr274I CTCGAG 1 cut(s) 924
SinI GGWCC 2 cut(s) 26, 806
SlaI CTCGAG 1 cut(s) 924
SmiMI CAYNNNNRTG 2 cut(s) 137, 245
SmlI CTYRAG 3 cut(s) 886, 924, 1015
SmoI CTYRAG 3 cut(s) 886, 924, 1015
Sse9I AATT 6 cut(s) 67, 442, 729, 764, 874, 1025
SsiI CCGC 1 cut(s) 49
StyD4I CCNGG 2 cut(s) 147, 1009
TaaI ACNGT 3 cut(s) 16, 304, 643
TaiI ACGT 2 cut(s) 141, 561
TaqI TCGA 3 cut(s) 411, 904, 925
TasI AATT 6 cut(s) 67, 442, 729, 764, 874, 1025
TatI WGTACW 2 cut(s) 62, 534
TfiI GAWTC 5 cut(s) 84, 509, 596, 758, 1100
Tru1I TTAA 2 cut(s) 629, 887
Tru9I TTAA 2 cut(s) 629, 887
TscAI CASTG 6 cut(s) 169, 307, 511, 922, 969, 1074
TseFI GTSAC 3 cut(s) 194, 541, 603
TseI GCWGC 3 cut(s) 101, 231, 250
Tsp45I GTSAC 3 cut(s) 194, 541, 603
TspDTI ATGAA 3 cut(s) 417, 443, 1038
TspRI CASTG 6 cut(s) 169, 307, 511, 922, 969, 1074
Tth111I GACNNNGTC 1 cut(s) 557
Van91I CCANNNNNTGG 3 cut(s) 520, 743, 801
Vha464I CTTAAG 1 cut(s) 886
VpaK11BI GGWCC 2 cut(s) 26, 806
XapI RAATTY 1 cut(s) 1025
XceI RCATGY 1 cut(s) 1003
XhoI CTCGAG 1 cut(s) 924
XmiI GTMKAC 1 cut(s) 952
ZraI GACGTC 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.