Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007568.1

Orthogroup ID

OG0007163

Physical Location & Seq

Genomic Coordinates Reverse (-)

2825 .. 4185

Gene Structure 1361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007568.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgaccaccgtggcttccagtccatttttgttatccaaatcccgccctttctcttgtactaattacaacaagaggggattcccacttagagttgcagctgttgcttcaatcccatttcaacaacccatcaacgtggactacctggaacaagagttcagtggccgtggagtggtattcaaaggcattggtgacgattgcgttgccaagatgagtcttgataatggcagcaaagccatcttgatgctgccaagtggcctaatcgcgtcctacaaagcctccatgtggcatggtggcactgttgagttgctccaatcttcagtctcccaagaagaagaagaagaagatgaagaagccaatagcatccgaggaggggtgtctgtggctttggaatgtctcagtctcagtctcgatcaagaacaagtttcatggtctccaagtaattgggctcttcatgacatcacaggaaatcctcaggactctattcaggtagaactgatcagcactgattcccatgacatggttcaagtcaagtacattgtgactctccaagacgacgtcctaatctcacagcttatggtctctaataactctgattcttcgtcactccaactaagtgggtgtattttaagccatctgacagtcagctcaccagacgctacttacgcagttggtttggaaagatcagatttctttggcaggttacccattttgacaggttcagctataattcctccagattgtggccagaaaagtgaatctcaattcagccaactatggaaacaaatgacattcaatgcttggggtcctaagaatggccaccaaacagaaactgaacaagaagaagaaatggagcaaggggaagaagatgacaattataagaacttaagggagcaaatgtgtcgaatatacaccagtgcgcctcgagacttcacaattattgacaggggtagacgaaactcagtggtggttggaagagatgggtttgaagagctatacatgttcagccctggctcaagtcatgaattctacggcgaatatgcttatatctgcattggccagtcggcagtgctcaatccaataatcttggggcctaaggaatcatggacaggtggacagcgcttacacaatccaaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015979 GO:0016020 GO:0019222 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0050789 GO:0055114 GO:0060255 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

41.91

Weight (kDa)

4.62

Isoelectric Point (pI)

60.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55370 AT1G55370
fragaria_vesca	FvH4_1g28070 FvH4_1g28070 FvH4_4g18560 FvH4_4g18560
malus_domestica	MD14G1002400.v1.1
prunus_persica	Prupe.7G003600_v2.0.a1
pyrus_communis	pycom49g00190
rosa_chinensis	RchiOBHm_Chr3g0497181
rosa_laevigata	RLG00000000831 RLG00000022473
rosa_multiflora	Rmu_sc0002276.1_g000005 Rmu_sc0002893.1_g000013 Rmu_sc0007568.1_g000002 Rmu_ssc0000474.1_g000020
rosa_roxburghii	Rroxscaffold_6G00388300
rosa_rugosa	Rorug03G0291600
rosa_samantha	Rh3AG334900 Rh3BG372600 Rh3CG369000 Rh3DG369900 Rh7CG503300 Rh7DG471700
rosa_wichuraiana	Rw3G029440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	876
AatII	GACGTC	1 cut(s)	558
Acc36I	ACCTGC	1 cut(s)	687
AccB7I	CCANNNNNTGG	2 cut(s)	517, 740
AccI	GTMKAC	1 cut(s)	949
AccII	CGCG	1 cut(s)	263
AciI	CCGC	1 cut(s)	43
AcoI	YGGCCR	4 cut(s)	160, 742, 814, 1054
AcsI	RAATTY	1 cut(s)	1022
AcuI	CTGAAG	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	555
AfaI	GTAC	2 cut(s)	58, 533
AfeI	AGCGCT	1 cut(s)	1118
AfiI	CCNNNNNNNGG	6 cut(s)	169, 282, 370, 517, 740, 812
AflII	CTTAAG	1 cut(s)	883
AflIII	ACRYGT	1 cut(s)	996
AgsI	TTSAA	6 cut(s)	108, 119, 178, 524, 793, 986
AjnI	CCWGG	2 cut(s)	141, 1006
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	5 cut(s)	98, 571, 645, 722, 991
AluI	AGCT	5 cut(s)	98, 571, 645, 722, 991
Alw21I	GWGCWC	1 cut(s)	1071
Alw26I	GTCTC	7 cut(s)	325, 398, 404, 410, 435, 583, 918
AlwNI	CAGNNNCTG	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	921
Aor51HI	AGCGCT	1 cut(s)	1118
AoxI	GGCC	6 cut(s)	160, 253, 742, 814, 1054, 1088
ApeKI	GCWGC	3 cut(s)	95, 225, 244
ApoI	RAATTY	1 cut(s)	1022
AspLEI	GCGC	2 cut(s)	919, 1119
AspS9I	GGNCC	2 cut(s)	803, 1088
AsuHPI	GGTGA	2 cut(s)	200, 639
AvaI	CYCGRG	1 cut(s)	921
AvaII	GGWCC	1 cut(s)	803
AxyI	CCTNAGG	2 cut(s)	471, 1092
BalI	TGGCCA	3 cut(s)	744, 816, 1056
BanII	GRGCYC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	1071
BbvI	GCAGC	3 cut(s)	107, 231, 237
BccI	CCATC	4 cut(s)	134, 242, 639, 971
BceAI	ACGGC	2 cut(s)	147, 1045
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 881, 915
BciT130I	CCWGG	2 cut(s)	143, 1008
BclI	TGATCA	1 cut(s)	495
BcoDI	GTCTC	7 cut(s)	325, 398, 404, 410, 435, 583, 918
BfoI	RGCGCY	1 cut(s)	1120
BfrI	CTTAAG	1 cut(s)	883
BfuAI	ACCTGC	1 cut(s)	687
BisI	GCNGC	3 cut(s)	96, 226, 245
BlsI	GCNGC	3 cut(s)	97, 227, 246
Bme1390I	CCNGG	2 cut(s)	143, 1008
Bme18I	GGWCC	1 cut(s)	803
BmeT110I	CYCGRG	1 cut(s)	921
BmgT120I	GGNCC	2 cut(s)	803, 1088
BmiI	GGNNCC	2 cut(s)	804, 1089
BmrFI	CCNGG	2 cut(s)	143, 1008
BmsI	GCATC	2 cut(s)	231, 369
BpmI	CTGGAG	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	997
BsaHI	GRCGYC	1 cut(s)	555
BsaI	GGTCTC	2 cut(s)	435, 583
BsaJI	CCNNGG	4 cut(s)	9, 163, 364, 1006
BsaXI	ACNNNNNCTCC	4 cut(s)	260, 290, 881, 911
Bsc4I	CCNNNNNNNGG	6 cut(s)	169, 282, 370, 517, 740, 812
Bse1I	ACTGG	3 cut(s)	18, 912, 1057
Bse21I	CCTNAGG	2 cut(s)	471, 1092
BseBI	CCWGG	2 cut(s)	143, 1008
BseDI	CCNNGG	4 cut(s)	9, 163, 364, 1006
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	6 cut(s)	169, 282, 370, 517, 740, 812
BseMII	CTCAG	4 cut(s)	409, 415, 485, 972
BseNI	ACTGG	3 cut(s)	18, 912, 1057
BseRI	GAGGAG	1 cut(s)	381
BseXI	GCAGC	3 cut(s)	107, 231, 237
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	6 cut(s)	162, 255, 744, 816, 1056, 1090
BsiHKAI	GWGCWC	1 cut(s)	1071
BsiHKCI	CYCGRG	1 cut(s)	921
BslI	CCNNNNNNNGG	6 cut(s)	169, 282, 370, 517, 740, 812
BsmAI	GTCTC	7 cut(s)	325, 398, 404, 410, 435, 583, 918
BsnI	GGCC	6 cut(s)	162, 255, 744, 816, 1056, 1090
Bso31I	GGTCTC	2 cut(s)	435, 583
BsoBI	CYCGRG	1 cut(s)	921
Bsp1286I	GDGCHC	2 cut(s)	448, 1071
Bsp143I	GATC	3 cut(s)	409, 495, 680
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	6 cut(s)	162, 255, 744, 816, 1056, 1090
BspCNI	CTCAG	4 cut(s)	408, 414, 484, 971
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	2 cut(s)	451, 1018
BspLI	GGNNCC	2 cut(s)	804, 1089
BspMI	ACCTGC	1 cut(s)	687
BspQI	GCTCTTC	2 cut(s)	453, 981
BspTI	CTTAAG	1 cut(s)	883
BspTNI	GGTCTC	2 cut(s)	435, 583
BsrI	ACTGG	3 cut(s)	18, 912, 1057
BssECI	CCNNGG	4 cut(s)	9, 163, 364, 1006
BssMI	GATC	3 cut(s)	409, 495, 680
BssNI	GRCGYC	1 cut(s)	555
Bst2UI	CCWGG	2 cut(s)	143, 1008
Bst4CI	ACNGT	3 cut(s)	10, 298, 640
Bst6I	CTCTTC	3 cut(s)	453, 967, 981
BstACI	GRCGYC	1 cut(s)	555
BstAFI	CTTAAG	1 cut(s)	883
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstDEI	CTNAG	8 cut(s)	86, 395, 401, 471, 611, 807, 958, 1092
BstDSI	CCRYGG	2 cut(s)	9, 163
BstEII	GGTNACC	1 cut(s)	699
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	1 cut(s)	263
BstH2I	RGCGCY	1 cut(s)	1120
BstHHI	GCGC	2 cut(s)	919, 1119
BstKTI	GATC	3 cut(s)	412, 498, 683
BstMAI	GTCTC	7 cut(s)	325, 398, 404, 410, 435, 583, 918
BstMBI	GATC	3 cut(s)	409, 495, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 662
BstNI	CCWGG	2 cut(s)	143, 1008
BstNSI	RCATGY	1 cut(s)	1000
BstPI	GGTNACC	1 cut(s)	699
BstSCI	CCNGG	2 cut(s)	141, 1006
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	107, 231, 237
BstXI	CCANNNNNNTGG	3 cut(s)	133, 441, 614
Bsu36I	CCTNAGG	2 cut(s)	471, 1092
BsuRI	GGCC	6 cut(s)	162, 255, 744, 816, 1056, 1090
BtgI	CCRYGG	2 cut(s)	9, 163
BtsCI	GGATG	1 cut(s)	360
BtsI	GCAGTG	1 cut(s)	1071
BtsIMutI	CAGTG	6 cut(s)	163, 294, 501, 919, 966, 1071
BveI	ACCTGC	1 cut(s)	687
CaiI	CAGNNNCTG	1 cut(s)	830
CciI	TCATGA	2 cut(s)	451, 1018
CfoI	GCGC	2 cut(s)	919, 1119
Cfr13I	GGNCC	2 cut(s)	803, 1088
CseI	GACGC	2 cut(s)	252, 662
Csp6I	GTAC	2 cut(s)	57, 532
CviAII	CATG	9 cut(s)	280, 287, 426, 452, 512, 517, 997, 1019, 1101
CviQI	GTAC	2 cut(s)	57, 532
DdeI	CTNAG	8 cut(s)	86, 395, 401, 471, 611, 807, 958, 1092
DpnI	GATC	3 cut(s)	411, 497, 682
DpnII	GATC	3 cut(s)	409, 495, 680
EaeI	YGGCCR	4 cut(s)	160, 742, 814, 1054
Eam1104I	CTCTTC	3 cut(s)	453, 967, 981
EarI	CTCTTC	3 cut(s)	453, 967, 981
Eco24I	GRGCYC	1 cut(s)	448
Eco31I	GGTCTC	2 cut(s)	435, 583
Eco47I	GGWCC	1 cut(s)	803
Eco47III	AGCGCT	1 cut(s)	1118
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	2 cut(s)	471, 1092
Eco88I	CYCGRG	1 cut(s)	921
Eco91I	GGTNACC	1 cut(s)	699
EcoO109I	RGGNCCY	2 cut(s)	803, 1088
EcoO65I	GGTNACC	1 cut(s)	699
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	2 cut(s)	141, 1006
EcoT38I	GRGCYC	1 cut(s)	448
FaeI	CATG	9 cut(s)	283, 290, 429, 455, 515, 520, 1000, 1022, 1104
FatI	CATG	9 cut(s)	279, 286, 425, 451, 511, 516, 996, 1018, 1100
FauI	CCCGC	1 cut(s)	50
FbaI	TGATCA	1 cut(s)	495
FblI	GTMKAC	1 cut(s)	949
Fnu4HI	GCNGC	3 cut(s)	96, 226, 245
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	3 cut(s)	96, 226, 245
GlaI	GCGC	2 cut(s)	918, 1118
GluI	GCNGC	3 cut(s)	96, 226, 245
GsuI	CTGGAG	1 cut(s)	717
HaeII	RGCGCY	1 cut(s)	1120
HaeIII	GGCC	6 cut(s)	162, 255, 744, 816, 1056, 1090
HgaI	GACGC	2 cut(s)	252, 662
HhaI	GCGC	2 cut(s)	919, 1119
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	9 cut(s)	283, 290, 429, 455, 515, 520, 1000, 1022, 1104
Hin6I	GCGC	2 cut(s)	917, 1117
HinP1I	GCGC	2 cut(s)	917, 1117
HinfI	GANTC	8 cut(s)	78, 211, 476, 506, 541, 593, 755, 1097
HphI	GGTGA	2 cut(s)	200, 639
Hpy166II	GTNNAC	3 cut(s)	136, 950, 1112
Hpy188I	TCNGA	4 cut(s)	365, 592, 636, 685
Hpy188III	TCNNGA	9 cut(s)	215, 238, 407, 413, 452, 473, 734, 923, 1019
Hpy8I	GTNNAC	3 cut(s)	136, 950, 1112
Hpy99I	CGWCG	1 cut(s)	557
HpyCH4III	ACNGT	3 cut(s)	10, 298, 640
HpyCH4IV	ACGT	2 cut(s)	132, 555
HpyCH4V	TGCA	2 cut(s)	95, 1050
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 662
HpyF3I	CTNAG	8 cut(s)	86, 395, 401, 471, 611, 807, 958, 1092
HpySE526I	ACGT	2 cut(s)	132, 555
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	9 cut(s)	283, 290, 429, 455, 515, 520, 1000, 1022, 1104
HspAI	GCGC	2 cut(s)	917, 1117
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	3 cut(s)	409, 495, 680
LguI	GCTCTTC	2 cut(s)	453, 981
LmnI	GCTCC	3 cut(s)	312, 850, 889
Lsp1109I	GCAGC	3 cut(s)	107, 231, 237
LweI	GCATC	2 cut(s)	231, 369
MaeII	ACGT	2 cut(s)	132, 555
MaeIII	GTNAC	4 cut(s)	188, 538, 600, 699
MalI	GATC	3 cut(s)	411, 497, 682
MboI	GATC	3 cut(s)	409, 495, 680
MhlI	GDGCHC	2 cut(s)	448, 1071
MlsI	TGGCCA	3 cut(s)	744, 816, 1056
MluCI	AATT	7 cut(s)	61, 439, 726, 761, 871, 933, 1022
MluNI	TGGCCA	3 cut(s)	744, 816, 1056
MlyI	GAGTC	3 cut(s)	220, 470, 535
MmeI	TCCRAC	2 cut(s)	631, 949
MnlI	CCTC	7 cut(s)	66, 286, 359, 362, 480, 741, 930
Mox20I	TGGCCA	3 cut(s)	744, 816, 1056
MscI	TGGCCA	3 cut(s)	744, 816, 1056
MseI	TTAA	2 cut(s)	626, 884
MslI	CAYNNNNRTG	2 cut(s)	131, 239
Msp20I	TGGCCA	3 cut(s)	744, 816, 1056
MspA1I	CMGCKG	1 cut(s)	98
MspCI	CTTAAG	1 cut(s)	883
MspR9I	CCNGG	2 cut(s)	143, 1008
MvaI	CCWGG	2 cut(s)	143, 1008
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	101, 662
NdeII	GATC	3 cut(s)	409, 495, 680
NlaIII	CATG	9 cut(s)	283, 290, 429, 455, 515, 520, 1000, 1022, 1104
NlaIV	GGNNCC	2 cut(s)	804, 1089
NmuCI	GTSAC	3 cut(s)	188, 538, 600
NspI	RCATGY	1 cut(s)	1000
PaeR7I	CTCGAG	1 cut(s)	921
PagI	TCATGA	2 cut(s)	451, 1018
PciI	ACATGT	1 cut(s)	996
PciSI	GCTCTTC	2 cut(s)	453, 981
PfeI	GAWTC	5 cut(s)	78, 506, 593, 755, 1097
PflFI	GACNNNGTC	1 cut(s)	554
PflMI	CCANNNNNTGG	2 cut(s)	517, 740
PkrI	GCNGC	3 cut(s)	97, 227, 246
PleI	GAGTC	3 cut(s)	219, 470, 535
PpsI	GAGTC	3 cut(s)	219, 470, 535
PpuMI	RGGWCCY	1 cut(s)	803
PscI	ACATGT	1 cut(s)	996
PsiI	TTATAA	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	803
Psp6I	CCWGG	2 cut(s)	141, 1006
PspEI	GGTNACC	1 cut(s)	699
PspGI	CCWGG	2 cut(s)	141, 1006
PspN4I	GGNNCC	2 cut(s)	804, 1089
PspPI	GGNCC	2 cut(s)	803, 1088
PspPPI	RGGWCCY	1 cut(s)	803
PstNI	CAGNNNCTG	1 cut(s)	830
PsyI	GACNNNGTC	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	58, 533
RsaNI	GTAC	2 cut(s)	57, 532
RseI	CAYNNNNRTG	2 cut(s)	131, 239
SapI	GCTCTTC	2 cut(s)	453, 981
SaqAI	TTAA	2 cut(s)	626, 884
SatI	GCNGC	3 cut(s)	96, 226, 245
Sau3AI	GATC	3 cut(s)	409, 495, 680
Sau96I	GGNCC	2 cut(s)	803, 1088
SchI	GAGTC	3 cut(s)	220, 470, 535
ScrFI	CCNGG	2 cut(s)	143, 1008
SduI	GDGCHC	2 cut(s)	448, 1071
SfaNI	GCATC	2 cut(s)	231, 369
Sfr274I	CTCGAG	1 cut(s)	921
SinI	GGWCC	1 cut(s)	803
SlaI	CTCGAG	1 cut(s)	921
SmiMI	CAYNNNNRTG	2 cut(s)	131, 239
SmlI	CTYRAG	3 cut(s)	883, 921, 1012
SmoI	CTYRAG	3 cut(s)	883, 921, 1012
Sse9I	AATT	7 cut(s)	61, 439, 726, 761, 871, 933, 1022
SsiI	CCGC	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	141, 1006
TaaI	ACNGT	3 cut(s)	10, 298, 640
TaiI	ACGT	2 cut(s)	135, 558
TaqI	TCGA	3 cut(s)	408, 901, 922
TasI	AATT	7 cut(s)	61, 439, 726, 761, 871, 933, 1022
TatI	WGTACW	2 cut(s)	56, 531
TfiI	GAWTC	5 cut(s)	78, 506, 593, 755, 1097
Tru1I	TTAA	2 cut(s)	626, 884
Tru9I	TTAA	2 cut(s)	626, 884
TscAI	CASTG	6 cut(s)	163, 301, 508, 919, 966, 1071
TseFI	GTSAC	3 cut(s)	188, 538, 600
TseI	GCWGC	3 cut(s)	95, 225, 244
Tsp45I	GTSAC	3 cut(s)	188, 538, 600
TspDTI	ATGAA	4 cut(s)	360, 414, 440, 1035
TspRI	CASTG	6 cut(s)	163, 301, 508, 919, 966, 1071
Tth111I	GACNNNGTC	1 cut(s)	554
Van91I	CCANNNNNTGG	2 cut(s)	517, 740
Vha464I	CTTAAG	1 cut(s)	883
VpaK11BI	GGWCC	1 cut(s)	803
XapI	RAATTY	1 cut(s)	1022
XceI	RCATGY	1 cut(s)	1000
XhoI	CTCGAG	1 cut(s)	921
XmiI	GTMKAC	1 cut(s)	949
ZraI	GACGTC	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.