Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Reverse (-)

23058582 .. 23062063

Gene Structure 3482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGAGTGGTTCCAACAGCACTTCTTGTCCAATGGCTTTTGCCGGGGATAATAGTGATGGTCCGATGTGTCCTATGATGATGATGATGCCGCCCATCATGACATCACATCAACATCATGGTCATGATCATCAACATCAACAACAAGAACATGATGGTTATGCATATCAGTCACACCACCAACAAAGTAGTTCCCTTTTTCTTCAATCACTAGCTCCTCCCCAAGGAACTAAGAACAAAGTTGCTTCTTCTTCTTCTCCTTCCTCTTGTGCTCCTGCCTATTCTCTAATGGAGATCCATCATAACGAAATCGTTGCAGGAGGAATCAACCCTTGCTCCTCTTCCTCTTCTTCAGCCTCTGTCAAGGCCAAGATCATGGCTCATCCTCACTACCACCGCCTCTTGGCCGCTTATGTCAATTGTCAGAAGGTTGGAGCACCACCGGAGGTTGTGGCGAGGCTAGAGGAGGCATGCTCGTCTGCCGCAGCCGCTGCCGCATCTATGGGACCAACAGGATGTCTAGGTGAAGATCCAGGGCTTGATCAATTCATGGAAGCTTACTGTGAAATGCTCGTTAAGTATGAGCAAGAGCTCTCCAAACCTTTCAAGGAAGCTATGGTCTTCCTTCAACGTGTCGAGTGTCAATTCAAATCCCTCTCTCTATCCTCACCTTCCTCTTTCTCCGGTTATGGAGAGACAGCAATTGATAGGAACAATAATGGGTCATCCGAGGAAGAAGTCGATATGAACAATGAATTTGTAGATCCACAAGCTGAGGATAGAGAGCTTAAAGGACAGCTCTTGCGCAAGTACAGTGGTTACTTAGGGAGCCTCAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGAAAGCTCCCTAAAGAAGCTCGTCAACAACTGCTTGATTGGTGGAGCCGTCACTACAAATGGCCTTACCCTTCGGAGCAACAAAAGCTCGCCCTTGCGGAATCAACGGGGCTGGACCAGAAACAGATAAACAATTGGTTCATAAACCAGAGGAAACGGCATTGGAAGCCGTCGGAGGACATGCAGTTTGTAGTAATGGACGCAACACATCCTCACCATTACTTCATGGATAATGTCTTGGGCAATCCTTTCCCAATGGATCACATCTCCTCCACCATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005911 GO:0006355 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009506 GO:0009690 GO:0009691 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0009987 GO:0010468 GO:0010496 GO:0010497 GO:0010556 GO:0010817 GO:0015630 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022603 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042446 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046483 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048509 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

382

Amino Acids

42.75

Weight (kDa)

6.19

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	121 - 159	1.4e-21	KNOX1 domain
KNOX2	PF03791	173 - 219	1.2e-21	KNOX2 domain
ELK	PF03789	262 - 283	4.5e-11	ELK domain
Homeobox_KN	PF05920	302 - 341	3.7e-19	Homeobox KN domain
Homeodomain	PF00046	309 - 342	5.4e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	806
AciI	CCGC	7 cut(s)	92, 397, 408, 483, 489, 495, 962
AclWI	GGATC	4 cut(s)	289, 524, 758, 1131
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	755
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	812
AfiI	CCNNNNNNNGG	2 cut(s)	224, 403
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	4 cut(s)	206, 607, 629, 649
AjnI	CCWGG	1 cut(s)	532
Alw21I	GWGCWC	3 cut(s)	274, 439, 594
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	4 cut(s)	289, 524, 758, 1131
AlwNI	CAGNNNCTG	2 cut(s)	359, 491
AoxI	GGCC	3 cut(s)	366, 405, 926
ApeKI	GCWGC	2 cut(s)	485, 491
ApoI	RAATTY	1 cut(s)	755
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	3 cut(s)	62, 506, 979
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	3 cut(s)	536, 660, 1070
AvaII	GGWCC	3 cut(s)	62, 506, 979
BanII	GRGCYC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	613
Bbv12I	GWGCWC	3 cut(s)	274, 439, 594
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	2 cut(s)	478, 497
BccI	CCATC	4 cut(s)	53, 104, 149, 306
BceAI	ACGGC	3 cut(s)	897, 1018, 1037
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	1 cut(s)	534
BclI	TGATCA	2 cut(s)	127, 541
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	3 cut(s)	212, 461, 521
BisI	GCNGC	7 cut(s)	92, 408, 483, 486, 489, 492, 495
BlsI	GCNGC	7 cut(s)	93, 409, 484, 487, 490, 493, 496
Bme1390I	CCNGG	2 cut(s)	46, 534
Bme18I	GGWCC	3 cut(s)	62, 506, 979
BmgT120I	GGNCC	3 cut(s)	62, 506, 979
BmiI	GGNNCC	4 cut(s)	13, 507, 830, 911
BmrFI	CCNGG	2 cut(s)	46, 534
BmsI	GCATC	2 cut(s)	78, 506
BpiI	GAAGAC	1 cut(s)	613
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	818
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	4 cut(s)	45, 223, 533, 729
BsaWI	WCCGGW	2 cut(s)	442, 683
BsaXI	ACNNNNNCTCC	4 cut(s)	320, 350, 1118, 1148
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 403
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	4 cut(s)	45, 223, 533, 729
BseGI	GGATG	4 cut(s)	382, 521, 725, 1072
BseLI	CCNNNNNNNGG	2 cut(s)	224, 403
BseMII	CTCAG	1 cut(s)	765
BseRI	GAGGAG	4 cut(s)	207, 328, 479, 1123
BseXI	GCAGC	2 cut(s)	478, 497
BshFI	GGCC	3 cut(s)	368, 407, 928
BsiHKAI	GWGCWC	3 cut(s)	274, 439, 594
BsiSI	CCGG	3 cut(s)	45, 443, 684
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	224, 403
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	368, 407, 928
Bsp1286I	GDGCHC	3 cut(s)	274, 439, 594
Bsp143I	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
BspACI	CCGC	7 cut(s)	92, 397, 408, 483, 489, 495, 962
BspANI	GGCC	3 cut(s)	368, 407, 928
BspCNI	CTCAG	1 cut(s)	766
BspHI	TCATGA	3 cut(s)	99, 124, 846
BspLI	GGNNCC	4 cut(s)	13, 507, 830, 911
BspPI	GGATC	4 cut(s)	289, 524, 758, 1131
BssECI	CCNNGG	4 cut(s)	45, 223, 533, 729
BssMI	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	563, 815
Bst6I	CTCTTC	3 cut(s)	346, 352, 848
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	472, 954
BstDEI	CTNAG	3 cut(s)	231, 774, 823
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	4 cut(s)	382, 521, 725, 1072
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	7 cut(s)	130, 297, 375, 532, 544, 766, 1126
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
BstMWI	GCNNNNNNNGC	5 cut(s)	488, 491, 494, 949, 1030
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	2 cut(s)	474, 1048
BstSCI	CCNGG	2 cut(s)	44, 532
BstV1I	GCAGC	2 cut(s)	478, 497
BstV2I	GAAGAC	1 cut(s)	613
BstX2I	RGATCY	3 cut(s)	294, 529, 763
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	3 cut(s)	294, 529, 763
BsuRI	GGCC	3 cut(s)	368, 407, 928
BtsCI	GGATG	4 cut(s)	382, 521, 725, 1072
BtsIMutI	CAGTG	1 cut(s)	820
Cac8I	GCNNGC	2 cut(s)	472, 954
CaiI	CAGNNNCTG	2 cut(s)	359, 491
CciI	TCATGA	3 cut(s)	99, 124, 846
CfoI	GCGC	1 cut(s)	807
Cfr13I	GGNCC	3 cut(s)	62, 506, 979
CseI	GACGC	1 cut(s)	1073
Csp6I	GTAC	1 cut(s)	811
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	3 cut(s)	231, 774, 823
DpnI	GATC	7 cut(s)	129, 296, 374, 531, 543, 765, 1125
DpnII	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	3 cut(s)	346, 352, 848
EarI	CTCTTC	3 cut(s)	346, 352, 848
Ecl136II	GAGCTC	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	3 cut(s)	62, 506, 979
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	592
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	223
FaqI	GGGAC	1 cut(s)	519
FbaI	TGATCA	2 cut(s)	127, 541
Fnu4HI	GCNGC	7 cut(s)	92, 408, 483, 486, 489, 492, 495
FokI	GGATG	4 cut(s)	369, 528, 712, 1059
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	7 cut(s)	92, 408, 483, 486, 489, 492, 495
FspBI	CTAG	3 cut(s)	212, 461, 521
FspI	TGCGCA	1 cut(s)	806
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	7 cut(s)	92, 408, 483, 486, 489, 492, 495
HaeIII	GGCC	3 cut(s)	368, 407, 928
HapII	CCGG	3 cut(s)	45, 443, 684
HgaI	GACGC	1 cut(s)	1073
HhaI	GCGC	1 cut(s)	807
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HincII	GTYRAC	1 cut(s)	890
HindII	GTYRAC	1 cut(s)	890
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	2 cut(s)	324, 965
HpaII	CCGG	3 cut(s)	45, 443, 684
HphI	GGTGA	3 cut(s)	536, 660, 1070
Hpy166II	GTNNAC	1 cut(s)	890
Hpy188I	TCNGA	5 cut(s)	66, 426, 730, 940, 1039
Hpy188III	TCNNGA	3 cut(s)	100, 125, 847
Hpy8I	GTNNAC	1 cut(s)	890
Hpy99I	CGWCG	1 cut(s)	1039
HpyAV	CCTTC	5 cut(s)	270, 421, 635, 681, 945
HpyCH4III	ACNGT	2 cut(s)	563, 815
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	3 cut(s)	164, 317, 1048
HpyF10VI	GCNNNNNNNGC	5 cut(s)	488, 491, 494, 949, 1030
HpyF3I	CTNAG	3 cut(s)	231, 774, 823
HpySE526I	ACGT	1 cut(s)	631
HspAI	GCGC	1 cut(s)	805
Ksp22I	TGATCA	2 cut(s)	127, 541
Kzo9I	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
LmnI	GCTCC	8 cut(s)	220, 277, 341, 434, 828, 876, 909, 940
Lsp1109I	GCAGC	2 cut(s)	478, 497
LweI	GCATC	2 cut(s)	78, 506
MaeI	CTAG	3 cut(s)	212, 461, 521
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	3 cut(s)	171, 818, 914
MalI	GATC	7 cut(s)	129, 296, 374, 531, 543, 765, 1125
MboI	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
MfeI	CAATTG	3 cut(s)	418, 702, 997
MflI	RGATCY	3 cut(s)	294, 529, 763
MhlI	GDGCHC	3 cut(s)	274, 439, 594
MluCI	AATT	6 cut(s)	418, 545, 644, 702, 755, 997
MmeI	TCCRAC	3 cut(s)	39, 412, 1017
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	2 cut(s)	576, 789
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	3 cut(s)	45, 443, 684
MspR9I	CCNGG	2 cut(s)	46, 534
MunI	CAATTG	3 cut(s)	418, 702, 997
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	5 cut(s)	488, 491, 494, 949, 1030
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
NlaIV	GGNNCC	4 cut(s)	13, 507, 830, 911
NmuCI	GTSAC	2 cut(s)	171, 914
NsbI	TGCGCA	1 cut(s)	806
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	2 cut(s)	474, 1048
PaeI	GCATGC	1 cut(s)	474
PagI	TCATGA	3 cut(s)	99, 124, 846
PfeI	GAWTC	2 cut(s)	324, 965
PkrI	GCNGC	7 cut(s)	93, 409, 484, 487, 490, 493, 496
Psp124BI	GAGCTC	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	4 cut(s)	13, 507, 830, 911
PspPI	GGNCC	3 cut(s)	62, 506, 979
PstNI	CAGNNNCTG	2 cut(s)	359, 491
PsuI	RGATCY	3 cut(s)	294, 529, 763
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	576, 789
SatI	GCNGC	7 cut(s)	92, 408, 483, 486, 489, 492, 495
Sau3AI	GATC	7 cut(s)	127, 294, 372, 529, 541, 763, 1123
Sau96I	GGNCC	3 cut(s)	62, 506, 979
ScrFI	CCNGG	2 cut(s)	46, 534
SduI	GDGCHC	3 cut(s)	274, 439, 594
SfaNI	GCATC	2 cut(s)	78, 506
SinI	GGWCC	3 cut(s)	62, 506, 979
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	6 cut(s)	418, 545, 644, 702, 755, 997
SsiI	CCGC	7 cut(s)	92, 397, 408, 483, 489, 495, 962
SspMI	CTAG	3 cut(s)	212, 461, 521
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	44, 532
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	563, 815
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	2 cut(s)	636, 741
TasI	AATT	6 cut(s)	418, 545, 644, 702, 755, 997
TatI	WGTACW	1 cut(s)	810
TauI	GCSGC	5 cut(s)	94, 410, 485, 491, 497
TfiI	GAWTC	2 cut(s)	324, 965
Tru1I	TTAA	2 cut(s)	576, 789
Tru9I	TTAA	2 cut(s)	576, 789
TscAI	CASTG	1 cut(s)	820
TseFI	GTSAC	2 cut(s)	171, 914
TseI	GCWGC	2 cut(s)	485, 491
Tsp45I	GTSAC	2 cut(s)	171, 914
TspDTI	ATGAA	7 cut(s)	538, 761, 768, 835, 863, 994, 1078
TspRI	CASTG	1 cut(s)	820
VpaK11BI	GGWCC	3 cut(s)	62, 506, 979
XagI	CCTNNNNNAGG	1 cut(s)	222
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	2 cut(s)	474, 1048
XspI	CTAG	3 cut(s)	212, 461, 521
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.