Rmu_sc0004855.1_g000009

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004855.1
OG0002529
Physical Location & Seq
Reverse (-)
34018 .. 37123
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004855.1_g000009.1.cds

Sequence Viewer

Length: 999 bp
atggagggtgggagtaataattgtaatagtaagtattacagtcatggtgtgatgggatctgggtcctcttctgggatgttgatgcctcctcctcctgtgaattcttatgctactgctgcagatcaaactagtagttctagtaaccagcagcactatgtttctctgccttttaccaacatcaacccaaaccaaaatgatagtcaggaatatgagatgagtatgaaagctaagatcatgggtcatcctctcttccctcgcctcttggcctcttatgtcaattgtcaaaaggttggggcacctgctgaagtggtggctaggttagagcatgcggctgcggcctcaatatcttatgcggctgcaatttctgaagcatgtgaagaatcagaaccagacccagagctggatcagttcatggaggcctattgtgagatgcttgctaagtaccatgaagagctcacaaagcccttccatgaagccatgcttggcctctctaaaatcaactcccagctcaaagctctatccgtttcaccatcatattctgctagtactggtgatcttgttagacaaagtggatcttcagaagaggctgatgtgaatgagagtggcatagatccaagagccgaagattgggatattaaagctaagcttctgcaaaaatatggtggatgtcttggcagtctcagccaggagttgaagcagaagaaaaaaaacggaaagttgcccaaggaagcccgggttcaattgcaagaatggtggagcagaaattacacatggccctatccatcggagcctcaaaagttcggactagcagcatctacaggtctgactgtgaagcagataaacaactggttcataaaccaaaggaaacgccattggaagccgtcttcagagggtatgcaacttgctatggtggacgtggatcatccccaattctactatatggaccatctcatctgcaatcctttacctatggattgcacatctactcctttggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

332

Amino Acids

36.82

Weight (kDa)

5.63

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 295
AciI CCGC 3 cut(s) 329, 335, 353
AclWI GGATC 5 cut(s) 64, 411, 580, 605, 927
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 4 cut(s) 324, 387, 561, 870
AfaI GTAC 2 cut(s) 443, 547
AfiI CCNNNNNNNGG 3 cut(s) 72, 400, 627
AgsI TTSAA 2 cut(s) 694, 740
AhlI ACTAGT 1 cut(s) 128
AjiI CACGTC 1 cut(s) 916
AjnI CCWGG 1 cut(s) 684
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 7 cut(s) 227, 400, 454, 508, 515, 641, 646
AluI AGCT 7 cut(s) 227, 400, 454, 508, 515, 641, 646
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 5 cut(s) 64, 411, 580, 605, 927
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 5 cut(s) 264, 336, 417, 484, 773
ApeKI GCWGC 5 cut(s) 116, 148, 332, 356, 809
ApoI RAATTY 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AspS9I GGNCC 3 cut(s) 63, 774, 943
AsuC2I CCSGG 2 cut(s) 733, 734
AsuHPI GGTGA 2 cut(s) 519, 563
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 2 cut(s) 63, 943
BaeGI GKGCMC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 103, 160, 319, 343, 821
BccI CCATC 4 cut(s) 46, 538, 790, 954
BceAI ACGGC 1 cut(s) 865
BciT130I CCWGG 1 cut(s) 686
BcnI CCSGG 2 cut(s) 733, 734
BcoDI GTCTC 1 cut(s) 683
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 5 cut(s) 129, 138, 315, 543, 806
BfmI CTRYAG 2 cut(s) 117, 816
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 8 cut(s) 118, 150, 331, 334, 337, 355, 358, 811
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 686, 733, 734
Bme18I GGWCC 2 cut(s) 63, 943
BmeT110I CYCGRG 1 cut(s) 732
BmgBI CACGTC 1 cut(s) 916
BmgT120I GGNCC 3 cut(s) 63, 774, 943
BmiI GGNNCC 3 cut(s) 64, 297, 789
BmrFI CCNGG 3 cut(s) 686, 733, 734
BmsI GCATC 3 cut(s) 72, 420, 821
BpiI GAAGAC 1 cut(s) 876
Bpu1102I GCTNAGC 1 cut(s) 642
BpuMI CCSGG 2 cut(s) 733, 734
BsaJI CCNNGG 2 cut(s) 723, 732
BsaXI ACNNNNNCTCC 1 cut(s) 970
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 400, 627
Bse1I ACTGG 2 cut(s) 553, 851
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 2 cut(s) 723, 732
BseGI GGATG 4 cut(s) 81, 241, 671, 922
BseLI CCNNNNNNNGG 3 cut(s) 72, 400, 627
BseMII CTCAG 1 cut(s) 694
BseNI ACTGG 2 cut(s) 553, 851
BseRI GAGGAG 2 cut(s) 78, 81
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 5 cut(s) 103, 160, 319, 343, 821
BseYI CCCAGC 1 cut(s) 504
BshFI GGCC 5 cut(s) 266, 338, 419, 486, 775
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 1 cut(s) 733
BslI CCNNNNNNNGG 3 cut(s) 72, 400, 627
BsmAI GTCTC 1 cut(s) 683
BsnI GGCC 5 cut(s) 266, 338, 419, 486, 775
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 2 cut(s) 298, 456
Bsp143I GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 3 cut(s) 329, 335, 353
BspANI GGCC 5 cut(s) 266, 338, 419, 486, 775
BspCNI CTCAG 1 cut(s) 693
BspLI GGNNCC 3 cut(s) 64, 297, 789
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 5 cut(s) 64, 411, 580, 605, 927
BspQI GCTCTTC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 295
BsrI ACTGG 2 cut(s) 553, 851
BssECI CCNNGG 2 cut(s) 723, 732
BssMI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 2 cut(s) 41, 829
Bst6I CTCTTC 4 cut(s) 73, 254, 444, 576
BstC8I GCNNGC 2 cut(s) 327, 435
BstDEI CTNAG 4 cut(s) 228, 438, 642, 680
BstF5I GGATG 4 cut(s) 81, 241, 671, 922
BstKTI GATC 8 cut(s) 59, 124, 234, 406, 556, 575, 613, 922
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
BstMWI GCNNNNNNNGC 4 cut(s) 116, 335, 460, 681
BstNI CCWGG 1 cut(s) 686
BstNSI RCATGY 2 cut(s) 329, 375
BstSCI CCNGG 3 cut(s) 684, 731, 732
BstSFI CTRYAG 2 cut(s) 117, 816
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 5 cut(s) 103, 160, 319, 343, 821
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 3 cut(s) 56, 572, 610
BstYI RGATCY 3 cut(s) 56, 572, 610
BsuRI GGCC 5 cut(s) 266, 338, 419, 486, 775
BtrI CACGTC 1 cut(s) 916
BtsCI GGATG 4 cut(s) 81, 241, 671, 922
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 327, 435
Cfr13I GGNCC 3 cut(s) 63, 774, 943
Cfr9I CCCGGG 1 cut(s) 732
Csp6I GTAC 2 cut(s) 442, 546
CspCI CAANNNNNGTGG 2 cut(s) 734, 769
CviAII CATG 9 cut(s) 44, 235, 326, 372, 412, 446, 470, 478, 771
CviQI GTAC 2 cut(s) 442, 546
DdeI CTNAG 4 cut(s) 228, 438, 642, 680
DpnI GATC 8 cut(s) 58, 123, 233, 405, 555, 574, 612, 921
DpnII GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
Eam1104I CTCTTC 4 cut(s) 73, 254, 444, 576
EarI CTCTTC 4 cut(s) 73, 254, 444, 576
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 723
Eco147I AGGCCT 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 456
Eco47I GGWCC 2 cut(s) 63, 943
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 4 cut(s) 324, 387, 561, 870
Eco88I CYCGRG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 454
EcoO109I RGGNCCY 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
FalI AAGNNNNNCTT 6 cut(s) 465, 497, 559, 591, 630, 662
FatI CATG 9 cut(s) 43, 234, 325, 371, 411, 445, 469, 477, 770
Fnu4HI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
FokI GGATG 4 cut(s) 88, 228, 678, 909
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
FspBI CTAG 5 cut(s) 129, 138, 315, 543, 806
GluI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 5 cut(s) 266, 338, 419, 486, 775
HapII CCGG 1 cut(s) 733
Hin1II CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 1 cut(s) 380
HpaII CCGG 1 cut(s) 733
HphI GGTGA 2 cut(s) 519, 563
Hpy166II GTNNAC 1 cut(s) 913
Hpy188I TCNGA 7 cut(s) 367, 385, 580, 787, 803, 825, 889
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 913
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 41, 829
HpyCH4IV ACGT 1 cut(s) 915
HpyCH4V TGCA 7 cut(s) 119, 359, 652, 745, 898, 957, 978
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 335, 460, 681
HpyF3I CTNAG 4 cut(s) 228, 438, 642, 680
HpySE526I ACGT 1 cut(s) 915
Hsp92II CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
Kzo9I GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 2 cut(s) 756, 787
Lsp1109I GCAGC 5 cut(s) 103, 160, 319, 343, 821
LweI GCATC 3 cut(s) 72, 420, 821
MaeI CTAG 5 cut(s) 129, 138, 315, 543, 806
MaeII ACGT 1 cut(s) 915
MaeIII GTNAC 1 cut(s) 140
MalI GATC 8 cut(s) 58, 123, 233, 405, 555, 574, 612, 921
MboI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
MboII GAAGA 9 cut(s) 60, 241, 389, 461, 567, 593, 635, 712, 876
MfeI CAATTG 2 cut(s) 277, 740
MflI RGATCY 3 cut(s) 56, 572, 610
MhlI GDGCHC 2 cut(s) 298, 456
MluCI AATT 7 cut(s) 19, 100, 277, 360, 740, 763, 929
MseI TTAA 1 cut(s) 636
MspI CCGG 1 cut(s) 733
MspR9I CCNGG 3 cut(s) 686, 733, 734
MunI CAATTG 2 cut(s) 277, 740
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 4 cut(s) 116, 335, 460, 681
NciI CCSGG 2 cut(s) 733, 734
NdeII GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
NlaIII CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
NlaIV GGNNCC 3 cut(s) 64, 297, 789
NspI RCATGY 2 cut(s) 329, 375
PaeI GCATGC 1 cut(s) 329
PaqCI CACCTGC 1 cut(s) 307
PceI AGGCCT 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 8 cut(s) 118, 150, 331, 334, 337, 355, 358, 811
PpuMI RGGWCCY 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 3 cut(s) 64, 297, 789
PspPI GGNCC 3 cut(s) 63, 774, 943
PspPPI RGGWCCY 1 cut(s) 63
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 3 cut(s) 56, 572, 610
RsaI GTAC 2 cut(s) 443, 547
RsaNI GTAC 2 cut(s) 442, 546
SacI GAGCTC 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
Sau3AI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
Sau96I GGNCC 3 cut(s) 63, 774, 943
ScaI AGTACT 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 686, 733, 734
SduI GDGCHC 2 cut(s) 298, 456
SfaNI GCATC 3 cut(s) 72, 420, 821
SfcI CTRYAG 2 cut(s) 117, 816
SinI GGWCC 2 cut(s) 63, 943
SmaI CCCGGG 1 cut(s) 734
SpeI ACTAGT 1 cut(s) 128
SphI GCATGC 1 cut(s) 329
Sse9I AATT 7 cut(s) 19, 100, 277, 360, 740, 763, 929
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 3 cut(s) 329, 335, 353
SspMI CTAG 5 cut(s) 129, 138, 315, 543, 806
SstI GAGCTC 1 cut(s) 456
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 3 cut(s) 684, 731, 732
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 2 cut(s) 41, 829
TaiI ACGT 1 cut(s) 918
TasI AATT 7 cut(s) 19, 100, 277, 360, 740, 763, 929
TatI WGTACW 1 cut(s) 545
TauI GCSGC 3 cut(s) 332, 338, 356
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TseI GCWGC 5 cut(s) 116, 148, 332, 356, 809
TspDTI ATGAA 5 cut(s) 236, 400, 462, 486, 841
TspGWI ACGGA 2 cut(s) 511, 726
TspMI CCCGGG 1 cut(s) 732
VpaK11BI GGWCC 2 cut(s) 63, 943
XapI RAATTY 1 cut(s) 100
XceI RCATGY 2 cut(s) 329, 375
XmaI CCCGGG 1 cut(s) 732
XspI CTAG 5 cut(s) 129, 138, 315, 543, 806
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.