pycom09g03690

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0002529
Physical Location & Seq
Reverse (-)
2730136 .. 2732735
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03690.3

Sequence Viewer

Length: 999 bp
ATGGAAGGAGGAAGCAGTCGCAATAGTAGTAATTTAGGGTTTCTGGAGTCTTCTTTAGCTGCTGCCCTAATGAATTCAGAAACCAGAACTACAAGTAGTAACAGTTATAGTAAGCAGTTTCTTTCTCTACCTTTGATCGATAATAACTTACAAAGCCATCCTCATGAGACTACTGATCAGGAGATGGGCGTGAAAGCTAAGATTATCGCTCACCCCCTCTTCCCTCGCCTCTTGTCTGCCTATGTCAATTGCCAAAAGGTTGGGGCACCTCCTGAAGTGGTGGCTAGGTTAGAGCAGGTCTGCAGTGCTTATAATTCTGAGGCAGCAAAGAGGAGTAGCATAAGAGGAGGAGGAGGAGATGATCATCCAGACCCTGCGCTGGACCAGTTCATGGAGGCATATTGTGAGATGCTGACCAAGTACGAGGAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCCTCTCCAATATTGACTCCCAGCTCAAAGCTCTTACTTTTAACTCTAATTCCTCTTCGGGGTCTGCTAGTACTAGTGGTGGCGATTTTGTTGGACTAGGTACATCTCCAGAAGAGGCTAATGCGATCAATGACATAGATCCTCAAGCTGAAGATAGAGAGCTCAAAGTTCAGCTTTTGCACAAATACAGTGGATATTTGGGCACTCTGAAGCAGGAGTTTATGAAGAAGAAAAAGAATGGAAAATTGCCAAAGGAAGCACGGCACCAGTTGTTTGACTGGTGGTGCAGACATTACAAGTGGCCCTATCCATCGGAGGCTCAGAAGCTAGCACTGGCAGAATCAACTGGTTTGGAACTTAAACAGATAAATAATTGGTTCATCAACCAAAGGAAACGCCATTGGAAACCTTCAGAAGACATGCAATTTGTTTTGATGGATCCAACTCTTCATCAACACCATCACTATCCCAACTTCTGTATGGACAATGCAATCCGCAATCCCTTTTCCATGGATTGCACATCTACTCTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

333

Amino Acids

37.39

Weight (kDa)

6.19

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 286
AccB1I GGYRCC 2 cut(s) 265, 726
AccB7I CCANNNNNTGG 1 cut(s) 391
AciI CCGC 1 cut(s) 958
AclWI GGATC 3 cut(s) 596, 896, 909
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 4 cut(s) 294, 633, 692, 858
AfaI GTAC 3 cut(s) 422, 535, 565
AfiI CCNNNNNNNGG 3 cut(s) 379, 391, 522
AgsI TTSAA 1 cut(s) 448
AhlI ACTAGT 1 cut(s) 536
AluBI AGCT 9 cut(s) 59, 197, 433, 487, 494, 611, 625, 637, 790
AluI AGCT 9 cut(s) 59, 197, 433, 487, 494, 611, 625, 637, 790
Alw21I GWGCWC 2 cut(s) 435, 627
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 3 cut(s) 596, 896, 909
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 1 cut(s) 764
ApeKI GCWGC 3 cut(s) 59, 62, 323
ApoI RAATTY 1 cut(s) 73
ArsI GACNNNNNNTTYG 2 cut(s) 872, 904
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 382, 765
AsuHPI GGTGA 1 cut(s) 203
AsuNHI GCTAGC 1 cut(s) 790
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 2 cut(s) 268, 668
BamHI GGATCC 1 cut(s) 901
BanI GGYRCC 2 cut(s) 265, 726
BanII GRGCYC 2 cut(s) 435, 627
BbsI GAAGAC 2 cut(s) 42, 885
Bbv12I GWGCWC 2 cut(s) 435, 627
BbvI GCAGC 3 cut(s) 46, 49, 335
BccI CCATC 5 cut(s) 165, 178, 781, 892, 930
BceAI ACGGC 1 cut(s) 740
BclI TGATCA 2 cut(s) 175, 361
BcoDI GTCTC 1 cut(s) 161
BcuI ACTAGT 1 cut(s) 536
BfaI CTAG 5 cut(s) 285, 531, 537, 560, 791
BfmI CTRYAG 1 cut(s) 301
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 3 cut(s) 60, 63, 324
BlsI GCNGC 3 cut(s) 61, 64, 325
BmcAI AGTACT 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 382, 765
BmiI GGNNCC 3 cut(s) 267, 728, 903
BmsI GCATC 1 cut(s) 399
BmtI GCTAGC 1 cut(s) 794
BpiI GAAGAC 2 cut(s) 42, 885
BpmI CTGGAG 2 cut(s) 65, 555
BpuEI CTTGAG 1 cut(s) 591
Bsa29I ATCGAT 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 972
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 391, 522
Bse1I ACTGG 5 cut(s) 385, 730, 746, 801, 814
Bse8I GATNNNNATC 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 972
BseGI GGATG 2 cut(s) 157, 364
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 3 cut(s) 379, 391, 522
BseMII CTCAG 2 cut(s) 309, 797
BseNI ACTGG 5 cut(s) 385, 730, 746, 801, 814
BseRI GAGGAG 5 cut(s) 346, 360, 363, 366, 369
BseSI GKGCMC 2 cut(s) 268, 668
BseXI GCAGC 3 cut(s) 46, 49, 335
BseYI CCCAGC 1 cut(s) 483
BsgI GTGCAG 1 cut(s) 769
BshFI GGCC 1 cut(s) 766
BshNI GGYRCC 2 cut(s) 265, 726
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 435, 627
BslI CCNNNNNNNGG 3 cut(s) 379, 391, 522
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 1 cut(s) 766
Bsp1286I GDGCHC 4 cut(s) 268, 435, 627, 668
Bsp143I GATC 6 cut(s) 135, 175, 361, 588, 601, 901
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 1 cut(s) 958
BspANI GGCC 1 cut(s) 766
BspCNI CTCAG 2 cut(s) 310, 796
BspDI ATCGAT 1 cut(s) 138
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 267, 728, 903
BspMAI CTGCAG 1 cut(s) 305
BspMI ACCTGC 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 794
BspPI GGATC 3 cut(s) 596, 896, 909
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 2 cut(s) 265, 726
BsrI ACTGG 5 cut(s) 385, 730, 746, 801, 814
BssECI CCNNGG 1 cut(s) 972
BssMI GATC 6 cut(s) 135, 175, 361, 588, 601, 901
BssT1I CCWWGG 1 cut(s) 972
Bst4CI ACNGT 2 cut(s) 104, 653
Bst6I CTCTTC 5 cut(s) 224, 423, 523, 570, 915
BstC8I GCNNGC 1 cut(s) 792
BstDEI CTNAG 3 cut(s) 198, 318, 783
BstDSI CCRYGG 1 cut(s) 972
BstF5I GGATG 2 cut(s) 157, 364
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 6 cut(s) 138, 178, 364, 591, 604, 904
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 6 cut(s) 135, 175, 361, 588, 601, 901
BstNSI RCATGY 1 cut(s) 886
BstSFI CTRYAG 1 cut(s) 301
BstSLI GKGCMC 2 cut(s) 268, 668
BstV1I GCAGC 3 cut(s) 46, 49, 335
BstV2I GAAGAC 2 cut(s) 42, 885
BstX2I RGATCY 2 cut(s) 601, 901
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 2 cut(s) 601, 901
Bsu15I ATCGAT 1 cut(s) 138
BsuRI GGCC 1 cut(s) 766
BsuTUI ATCGAT 1 cut(s) 138
BtgI CCRYGG 1 cut(s) 972
BtsCI GGATG 2 cut(s) 157, 364
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 3 cut(s) 310, 658, 794
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 792
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 382, 765
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 3 cut(s) 421, 534, 564
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 5 cut(s) 164, 391, 457, 883, 973
CviQI GTAC 3 cut(s) 421, 534, 564
DdeI CTNAG 3 cut(s) 198, 318, 783
DpnI GATC 6 cut(s) 137, 177, 363, 590, 603, 903
DpnII GATC 6 cut(s) 135, 175, 361, 588, 601, 901
Eam1104I CTCTTC 5 cut(s) 224, 423, 523, 570, 915
EarI CTCTTC 5 cut(s) 224, 423, 523, 570, 915
Ecl136II GAGCTC 2 cut(s) 433, 625
Eco130I CCWWGG 1 cut(s) 972
Eco24I GRGCYC 2 cut(s) 435, 627
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 2 cut(s) 433, 625
Eco57I CTGAAG 4 cut(s) 294, 633, 692, 858
EcoICRI GAGCTC 2 cut(s) 433, 625
EcoRI GAATTC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 972
EcoT38I GRGCYC 2 cut(s) 435, 627
ErhI CCWWGG 1 cut(s) 972
FaeI CATG 5 cut(s) 167, 394, 460, 886, 976
FalI AAGNNNNNCTT 4 cut(s) 444, 476, 621, 653
FatI CATG 5 cut(s) 163, 390, 456, 882, 972
FbaI TGATCA 2 cut(s) 175, 361
Fnu4HI GCNGC 3 cut(s) 60, 63, 324
FokI GGATG 2 cut(s) 144, 351
FriOI GRGCYC 2 cut(s) 435, 627
Fsp4HI GCNGC 3 cut(s) 60, 63, 324
FspBI CTAG 5 cut(s) 285, 531, 537, 560, 791
GlaI GCGC 1 cut(s) 378
GluI GCNGC 3 cut(s) 60, 63, 324
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 2 cut(s) 65, 555
HaeIII GGCC 1 cut(s) 766
HhaI GCGC 1 cut(s) 379
Hin1II CATG 5 cut(s) 167, 394, 460, 886, 976
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HinfI GANTC 3 cut(s) 47, 479, 803
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 6 cut(s) 79, 319, 672, 778, 786, 877
Hpy188III TCNNGA 6 cut(s) 44, 164, 179, 272, 368, 572
HpyAV CCTTC 2 cut(s) 454, 882
HpyCH4III ACNGT 2 cut(s) 104, 653
HpyCH4V TGCA 6 cut(s) 303, 643, 750, 886, 953, 981
HpyF3I CTNAG 3 cut(s) 198, 318, 783
Hsp92II CATG 5 cut(s) 167, 394, 460, 886, 976
HspAI GCGC 1 cut(s) 377
Ksp22I TGATCA 2 cut(s) 175, 361
Kzo9I GATC 6 cut(s) 135, 175, 361, 588, 601, 901
LguI GCTCTTC 1 cut(s) 423
Lsp1109I GCAGC 3 cut(s) 46, 49, 335
LweI GCATC 1 cut(s) 399
MaeI CTAG 5 cut(s) 285, 531, 537, 560, 791
MaeIII GTNAC 1 cut(s) 98
MalI GATC 6 cut(s) 137, 177, 363, 590, 603, 903
MboI GATC 6 cut(s) 135, 175, 361, 588, 601, 901
MfeI CAATTG 1 cut(s) 247
MflI RGATCY 2 cut(s) 601, 901
MhlI GDGCHC 4 cut(s) 268, 435, 627, 668
MluCI AATT 8 cut(s) 31, 73, 247, 313, 511, 707, 835, 887
MlyI GAGTC 2 cut(s) 56, 473
MmeI TCCRAC 2 cut(s) 535, 929
MseI TTAA 2 cut(s) 504, 822
MslI CAYNNNNRTG 1 cut(s) 162
MunI CAATTG 1 cut(s) 247
NcoI CCATGG 1 cut(s) 972
NdeII GATC 6 cut(s) 135, 175, 361, 588, 601, 901
NheI GCTAGC 1 cut(s) 790
NlaIII CATG 5 cut(s) 167, 394, 460, 886, 976
NlaIV GGNNCC 3 cut(s) 267, 728, 903
NspI RCATGY 1 cut(s) 886
PagI TCATGA 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 423
PfeI GAWTC 1 cut(s) 803
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 3 cut(s) 61, 64, 325
PleI GAGTC 2 cut(s) 55, 473
PpsI GAGTC 2 cut(s) 55, 473
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 2 cut(s) 435, 627
PspFI CCCAGC 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 267, 728, 903
PspPI GGNCC 2 cut(s) 382, 765
PstI CTGCAG 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 374
PsuI RGATCY 2 cut(s) 601, 901
RsaI GTAC 3 cut(s) 422, 535, 565
RsaNI GTAC 3 cut(s) 421, 534, 564
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 2 cut(s) 435, 627
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 2 cut(s) 504, 822
SatI GCNGC 3 cut(s) 60, 63, 324
Sau3AI GATC 6 cut(s) 135, 175, 361, 588, 601, 901
Sau96I GGNCC 2 cut(s) 382, 765
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 2 cut(s) 56, 473
SduI GDGCHC 4 cut(s) 268, 435, 627, 668
SfaNI GCATC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 301
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SpeI ACTAGT 1 cut(s) 536
Sse9I AATT 8 cut(s) 31, 73, 247, 313, 511, 707, 835, 887
SsiI CCGC 1 cut(s) 958
SspI AATATT 1 cut(s) 475
SspMI CTAG 5 cut(s) 285, 531, 537, 560, 791
SstI GAGCTC 2 cut(s) 435, 627
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 2 cut(s) 104, 653
TaqI TCGA 1 cut(s) 138
TasI AATT 8 cut(s) 31, 73, 247, 313, 511, 707, 835, 887
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 1 cut(s) 803
Tru1I TTAA 2 cut(s) 504, 822
Tru9I TTAA 2 cut(s) 504, 822
TscAI CASTG 3 cut(s) 310, 658, 801
TseI GCWGC 3 cut(s) 59, 62, 323
TspDTI ATGAA 5 cut(s) 86, 379, 701, 832, 902
TspRI CASTG 3 cut(s) 310, 658, 801
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 1 cut(s) 73
XceI RCATGY 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XspI CTAG 5 cut(s) 285, 531, 537, 560, 791
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.