Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Forward (+)

21663858 .. 21666479

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G212100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAGAGAGGAGGAACCAATTGTAATAATAGTAGTGGTGTTACTTATAGTGGTCTGATGATGGGGTTTGGGAACAACACTGGTAGAACTGGTAGTAGTAAGGCACAGTTTCTTTCTCTACCTTTGATGGTGGGTTGCAGCCATCCAAACTTGCAAAGTGATCATCAGACGACTGATCAGGAGATGATGGTTAGTTGCAGCGATAGAATGGAAGCCAAGATTATGGCTCATCCTCTCTTCCCTCGTCTCTTGGCCTCCTATGTCAGTTGCCAAAAGGTTGGGGCACCTCCTGAAGTAGTGGCTAGGTTAGAGCAGGCCTGCAGTGCCGCTGTTCACAATTCTGAGGCAGCATGTTTAGGAGGAGGAGATCCAGACCCAGCGCTGGACCAGTTCATGGAGGCCTACTGCGAGATGCTGACTAAGTACGAGGAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCCTCTCCAAAATCGACTCCCAGCTCCAAGCTCTCACAGTTCATTCTTCCTCAGATTCTGCTAGTAGTGGTGATAATATTGTTGGGAGAAGTGGGTCTCCAGAAGAGGTTGATGCCACCATGAATGAGAGTTGCATTGACCCTCGAGCTGAAGATAGGGAAATCAAAGCTAAGCTTTTGCACAAATACACTGGATATCTGGGCAGCCTCAAGCAGGAGTTTATGAAGAAGAAAAAGAATGGAAAGTTGCCGAAGGAAGCCCGGCATCAGTTGCTTGACTGGTGGAGCAGACACTACAAGTGGCCCTATCCATCGGAAGCTCAGAAGCTAGCACTGGCAGAGTCGACAGGTCTGGATCTGAAGCAGATAAATAACTGGTTCATCAATCAGAGGAAACGCCATTGGAAGCCTTCAGAGGATATTCAATTTGCTGTGATGGATCCAACTCATCCTCATCATCATCCCCACTTCTACATGGACAACAATCTCACCTTCCCCATGAACAGCACATCTACTCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

330

Amino Acids

36.82

Weight (kDa)

6.27

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	809
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	4 cut(s)	362, 828, 899, 912
AcuI	CTGAAG	4 cut(s)	312, 636, 845, 861
AfaI	GTAC	1 cut(s)	425
AfeI	AGCGCT	1 cut(s)	381
AfiI	CCNNNNNNNGG	3 cut(s)	382, 394, 679
AgsI	TTSAA	2 cut(s)	451, 890
AluBI	AGCT	8 cut(s)	436, 490, 497, 614, 635, 640, 785, 793
AluI	AGCT	8 cut(s)	436, 490, 497, 614, 635, 640, 785, 793
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	2 cut(s)	251, 567
AlwI	GGATC	4 cut(s)	362, 828, 899, 912
AlwNI	CAGNNNCTG	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	609
Aor51HI	AGCGCT	1 cut(s)	381
AoxI	GGCC	4 cut(s)	252, 315, 399, 767
ApeKI	GCWGC	4 cut(s)	138, 198, 347, 669
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	385, 768
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	2 cut(s)	548, 946
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	286
BamHI	GGATCC	1 cut(s)	904
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	150, 210, 359, 681
BccI	CCATC	6 cut(s)	55, 121, 150, 181, 784, 895
BclI	TGATCA	2 cut(s)	160, 175
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	251, 567
BfaI	CTAG	3 cut(s)	303, 528, 794
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	383
BisI	GCNGC	5 cut(s)	139, 199, 327, 348, 670
BlpI	GCTNAGC	1 cut(s)	636
BlsI	GCNGC	5 cut(s)	140, 200, 328, 349, 671
Bme1390I	CCNGG	1 cut(s)	727
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	385, 768
BmiI	GGNNCC	3 cut(s)	16, 285, 906
BmrFI	CCNGG	1 cut(s)	727
BmsI	GCATC	3 cut(s)	402, 568, 739
BmtI	GCTAGC	1 cut(s)	797
BpmI	CTGGAG	1 cut(s)	549
Bpu1102I	GCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	727
BsaI	GGTCTC	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 394, 679
Bse1I	ACTGG	7 cut(s)	85, 94, 388, 661, 749, 804, 845
BseGI	GGATG	4 cut(s)	142, 229, 913, 925
BseLI	CCNNNNNNNGG	3 cut(s)	382, 394, 679
BseMII	CTCAG	3 cut(s)	333, 531, 800
BseNI	ACTGG	7 cut(s)	85, 94, 388, 661, 749, 804, 845
BseRI	GAGGAG	3 cut(s)	24, 375, 378
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	4 cut(s)	150, 210, 359, 681
BseYI	CCCAGC	2 cut(s)	376, 486
BshFI	GGCC	4 cut(s)	254, 317, 401, 769
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	609
BsiSI	CCGG	1 cut(s)	727
BslI	CCNNNNNNNGG	3 cut(s)	382, 394, 679
BsmAI	GTCTC	2 cut(s)	251, 567
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	4 cut(s)	254, 317, 401, 769
Bso31I	GGTCTC	1 cut(s)	567
BsoBI	CYCGRG	1 cut(s)	609
Bsp1286I	GDGCHC	2 cut(s)	286, 438
Bsp143I	GATC	5 cut(s)	160, 175, 367, 820, 904
Bsp1720I	GCTNAGC	1 cut(s)	636
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	4 cut(s)	254, 317, 401, 769
BspCNI	CTCAG	3 cut(s)	334, 530, 799
BspLI	GGNNCC	3 cut(s)	16, 285, 906
BspMAI	CTGCAG	1 cut(s)	323
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	4 cut(s)	362, 828, 899, 912
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	567
BsrI	ACTGG	7 cut(s)	85, 94, 388, 661, 749, 804, 845
BssMI	GATC	5 cut(s)	160, 175, 367, 820, 904
Bst4CI	ACNGT	2 cut(s)	108, 505
Bst6I	CTCTTC	3 cut(s)	242, 426, 564
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	315, 319, 795
BstDEI	CTNAG	5 cut(s)	342, 420, 517, 636, 786
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	4 cut(s)	142, 229, 913, 925
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	5 cut(s)	163, 178, 370, 823, 907
BstMAI	GTCTC	2 cut(s)	251, 567
BstMBI	GATC	5 cut(s)	160, 175, 367, 820, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 736
BstNSI	RCATGY	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	725
BstSFI	CTRYAG	1 cut(s)	319
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	4 cut(s)	150, 210, 359, 681
BstX2I	RGATCY	3 cut(s)	367, 820, 904
BstXI	CCANNNNNNTGG	2 cut(s)	223, 278
BstYI	RGATCY	3 cut(s)	367, 820, 904
BsuRI	GGCC	4 cut(s)	254, 317, 401, 769
BtsCI	GGATG	4 cut(s)	142, 229, 913, 925
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	4 cut(s)	78, 328, 654, 797
Cac8I	GCNNGC	3 cut(s)	315, 319, 795
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	385, 768
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	6 cut(s)	351, 394, 460, 586, 940, 964
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	5 cut(s)	342, 420, 517, 636, 786
DpnI	GATC	5 cut(s)	162, 177, 369, 822, 906
DpnII	GATC	5 cut(s)	160, 175, 367, 820, 904
Eam1104I	CTCTTC	3 cut(s)	242, 426, 564
EarI	CTCTTC	3 cut(s)	242, 426, 564
Ecl136II	GAGCTC	1 cut(s)	436
Eco147I	AGGCCT	2 cut(s)	317, 401
Eco24I	GRGCYC	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	385
Eco47III	AGCGCT	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	4 cut(s)	312, 636, 845, 861
Eco88I	CYCGRG	1 cut(s)	609
EcoICRI	GAGCTC	1 cut(s)	436
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoRV	GATATC	1 cut(s)	662
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	6 cut(s)	354, 397, 463, 589, 943, 967
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 624, 656
FatI	CATG	6 cut(s)	350, 393, 459, 585, 939, 963
FbaI	TGATCA	2 cut(s)	160, 175
FblI	GTMKAC	1 cut(s)	809
Fnu4HI	GCNGC	5 cut(s)	139, 199, 327, 348, 670
FokI	GGATG	4 cut(s)	129, 216, 900, 912
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	5 cut(s)	139, 199, 327, 348, 670
FspBI	CTAG	3 cut(s)	303, 528, 794
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	5 cut(s)	139, 199, 327, 348, 670
GsaI	CCCAGC	2 cut(s)	380, 490
GsuI	CTGGAG	1 cut(s)	549
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	4 cut(s)	254, 317, 401, 769
HapII	CCGG	1 cut(s)	727
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	6 cut(s)	354, 397, 463, 589, 943, 967
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	3 cut(s)	482, 521, 806
HpaII	CCGG	1 cut(s)	727
HphI	GGTGA	2 cut(s)	548, 946
Hpy166II	GTNNAC	2 cut(s)	334, 810
Hpy188I	TCNGA	9 cut(s)	57, 168, 343, 520, 781, 789, 825, 855, 880
Hpy188III	TCNNGA	5 cut(s)	179, 290, 371, 566, 818
Hpy8I	GTNNAC	2 cut(s)	334, 810
HpyAV	CCTTC	4 cut(s)	457, 712, 885, 967
HpyCH4III	ACNGT	2 cut(s)	108, 505
HpyCH4V	TGCA	6 cut(s)	138, 154, 198, 321, 600, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 736
HpyF3I	CTNAG	5 cut(s)	342, 420, 517, 636, 786
Hsp92II	CATG	6 cut(s)	354, 397, 463, 589, 943, 967
HspAI	GCGC	1 cut(s)	380
Ksp22I	TGATCA	2 cut(s)	160, 175
Kzo9I	GATC	5 cut(s)	160, 175, 367, 820, 904
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	495, 750
Lsp1109I	GCAGC	4 cut(s)	150, 210, 359, 681
LweI	GCATC	3 cut(s)	402, 568, 739
MaeI	CTAG	3 cut(s)	303, 528, 794
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	5 cut(s)	162, 177, 369, 822, 906
MboI	GATC	5 cut(s)	160, 175, 367, 820, 904
MboII	GAAGA	7 cut(s)	229, 443, 504, 581, 629, 703, 706
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	3 cut(s)	367, 820, 904
MhlI	GDGCHC	2 cut(s)	286, 438
MluCI	AATT	3 cut(s)	19, 337, 890
MlyI	GAGTC	2 cut(s)	476, 815
MmeI	TCCRAC	1 cut(s)	932
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	727
MspR9I	CCNGG	1 cut(s)	727
MunI	CAATTG	1 cut(s)	19
MwoI	GCNNNNNNNGC	2 cut(s)	323, 736
NciI	CCSGG	1 cut(s)	727
NdeII	GATC	5 cut(s)	160, 175, 367, 820, 904
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	6 cut(s)	354, 397, 463, 589, 943, 967
NlaIV	GGNNCC	3 cut(s)	16, 285, 906
NspI	RCATGY	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	609
PceI	AGGCCT	2 cut(s)	317, 401
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	5 cut(s)	140, 200, 328, 349, 671
PleI	GAGTC	2 cut(s)	476, 814
PpsI	GAGTC	2 cut(s)	476, 814
Psp124BI	GAGCTC	1 cut(s)	438
PspFI	CCCAGC	2 cut(s)	376, 486
PspN4I	GGNNCC	3 cut(s)	16, 285, 906
PspPI	GGNCC	2 cut(s)	385, 768
PspXI	VCTCGAGB	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	3 cut(s)	367, 820, 904
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	438
SalI	GTCGAC	1 cut(s)	808
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	5 cut(s)	139, 199, 327, 348, 670
Sau3AI	GATC	5 cut(s)	160, 175, 367, 820, 904
Sau96I	GGNCC	2 cut(s)	385, 768
SchI	GAGTC	2 cut(s)	476, 815
ScrFI	CCNGG	1 cut(s)	727
SduI	GDGCHC	2 cut(s)	286, 438
SfaNI	GCATC	3 cut(s)	402, 568, 739
SfcI	CTRYAG	1 cut(s)	319
Sfr274I	CTCGAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	609, 674
SmoI	CTYRAG	2 cut(s)	609, 674
Sse9I	AATT	3 cut(s)	19, 337, 890
SseBI	AGGCCT	2 cut(s)	317, 401
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	3 cut(s)	303, 528, 794
SstI	GAGCTC	1 cut(s)	438
StuI	AGGCCT	2 cut(s)	317, 401
StyD4I	CCNGG	1 cut(s)	725
TaaI	ACNGT	2 cut(s)	108, 505
TaqI	TCGA	3 cut(s)	480, 610, 809
TasI	AATT	3 cut(s)	19, 337, 890
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	521
TscAI	CASTG	4 cut(s)	85, 328, 661, 804
TseI	GCWGC	4 cut(s)	138, 198, 347, 669
TspDTI	ATGAA	6 cut(s)	382, 497, 602, 704, 835, 980
TspRI	CASTG	4 cut(s)	85, 328, 661, 804
Van91I	CCANNNNNTGG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	385
XagI	CCTNNNNNAGG	1 cut(s)	677
XceI	RCATGY	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	809
XspI	CTAG	3 cut(s)	303, 528, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.