pycom17g09700

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002529
Physical Location & Seq
Reverse (-)
7398788 .. 7400963
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g09700.4

Sequence Viewer

Length: 1011 bp
ATGAAAGGAGGAATCAGTCGTAACAGTGACAGTTTAGGGTTTCTGGATTCTTCTTTAGCCGCTGCCCTAATGAATTCAGAAACCAGAACTACTAGTAGCAGCAGTTATAGTAAGCAGTTTCTTTCTCTACCTTTGATCAGCAATATTCCCAACTTACAAAGCCATCCGCATGAGACTATTGATCAGGAGATGAGCGTGAAAGCTAAGATTATGGCTCATCCTCTCTTCCCTCAACTCTTGTCTGCCTATGTCAATTGCTTAAAGGTTGGGGCACCTGCTGAAGTGGTGGCTAGGTTACAGCAGGTCTGCAGTGCTTATAATTCTGAGGCAGCAAAGAGGGGTAGCATAAGAGGAGGAGGAGGAGATGATCATCCAGACCCTGCGCTGGACCAGTTCATGGAGGCGTATTGCGAGATGCTGACCAAGTACGAGGAAGAGCTCACAAAACCCTTCAAAGAAGCCATGATTTTCCTCTCCAACATTGACGCCCAACTCAAAGCTCTTACTCTTTACTCTAATTCCTCTTCAGATTCTGCTAGTATTAGTAGTGGTGATTTTGTTGGGCAAAGTGGTTCTCCAGAAGAGGCTGATGCCATCAAGGAATGTTCCATGGATCCTCAAGCTGAAGATAGAGAACTCAAAGTTCAACTTTTGGGCAAATACAGTGGATATATGGGCACCCTCAAGCAGGAATTTATGAAGAAGAAAAAGATTGGAAAGTTGCCAAAGGAAGCCCGGCATCAGTTGCTGGATTGGTGGTCCAGACATTATAAGTGGCCCTATCCATCGGAGGCCCAGAAGCTAGCATTGGCAGAATCTACGGGTTTGGATCTTAAACAGATAAATAACTGGTTCATCAATCAAAGGAAACGCCATTGGAAGCCTTCGGAGGACATGCAGTTTGTTTTGATGGATCCAACTCTTCATCACCATCATCATGATCACCACTTCTATATGGACAATGCAATATGCAATCCCTTCTCCATGGATTGTTCATCTACTCGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

337

Amino Acids

37.78

Weight (kDa)

6.27

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 318, 771
AarI CACCTGC 1 cut(s) 283
Acc36I ACCTGC 2 cut(s) 283, 292
AccB1I GGYRCC 2 cut(s) 271, 677
AccB7I CCANNNNNTGG 1 cut(s) 397
AciI CCGC 2 cut(s) 60, 167
AclWI GGATC 5 cut(s) 608, 621, 837, 908, 921
AcsI RAATTY 2 cut(s) 73, 692
AcuI CTGAAG 3 cut(s) 300, 510, 645
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 3 cut(s) 385, 397, 688
AgsI TTSAA 2 cut(s) 454, 647
AhlI ACTAGT 1 cut(s) 92
AjuI GAANNNNNNNTTGG 2 cut(s) 791, 823
AluBI AGCT 5 cut(s) 203, 439, 500, 623, 802
AluI AGCT 5 cut(s) 203, 439, 500, 623, 802
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 5 cut(s) 608, 621, 837, 908, 921
AlwNI CAGNNNCTG 3 cut(s) 380, 533, 748
AoxI GGCC 2 cut(s) 776, 792
ApeKI GCWGC 3 cut(s) 62, 99, 329
ApoI RAATTY 2 cut(s) 73, 692
ArsI GACNNNNNNTTYG 2 cut(s) 884, 916
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 4 cut(s) 388, 759, 777, 793
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 3 cut(s) 563, 920, 935
AsuNHI GCTAGC 1 cut(s) 802
AvaII GGWCC 2 cut(s) 388, 759
BaeGI GKGCMC 2 cut(s) 274, 680
BamHI GGATCC 2 cut(s) 613, 913
BanI GGYRCC 2 cut(s) 271, 677
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 49, 111, 341
BccI CCATC 5 cut(s) 171, 602, 793, 904, 939
BclI TGATCA 4 cut(s) 135, 181, 367, 940
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 1 cut(s) 167
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 4 cut(s) 93, 291, 537, 803
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 2 cut(s) 283, 292
BisI GCNGC 4 cut(s) 60, 63, 100, 330
BlsI GCNGC 4 cut(s) 61, 64, 101, 331
Bme1390I CCNGG 1 cut(s) 736
Bme18I GGWCC 2 cut(s) 388, 759
BmgT120I GGNCC 4 cut(s) 388, 759, 777, 793
BmiI GGNNCC 4 cut(s) 273, 615, 679, 915
BmrFI CCNGG 1 cut(s) 736
BmsI GCATC 3 cut(s) 405, 580, 748
BmtI GCTAGC 1 cut(s) 806
BpmI CTGGAG 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 603, 668
BpuMI CCSGG 1 cut(s) 736
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 609, 984
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 397, 688
Bse1I ACTGG 2 cut(s) 391, 854
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 2 cut(s) 609, 984
BseGI GGATG 3 cut(s) 163, 217, 370
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 385, 397, 688
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 391, 854
BseRI GAGGAG 4 cut(s) 366, 369, 372, 375
BseSI GKGCMC 2 cut(s) 274, 680
BseXI GCAGC 3 cut(s) 49, 111, 341
BshFI GGCC 2 cut(s) 778, 794
BshNI GGYRCC 2 cut(s) 271, 677
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 1 cut(s) 736
BslI CCNNNNNNNGG 3 cut(s) 385, 397, 688
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 2 cut(s) 778, 794
Bsp1286I GDGCHC 3 cut(s) 274, 441, 680
Bsp143I GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
Bsp19I CCATGG 2 cut(s) 609, 984
BspACI CCGC 2 cut(s) 60, 167
BspANI GGCC 2 cut(s) 778, 794
BspCNI CTCAG 1 cut(s) 316
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 4 cut(s) 273, 615, 679, 915
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 2 cut(s) 283, 292
BspOI GCTAGC 1 cut(s) 806
BspPI GGATC 5 cut(s) 608, 621, 837, 908, 921
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 2 cut(s) 271, 677
BsrI ACTGG 2 cut(s) 391, 854
BssECI CCNNGG 2 cut(s) 609, 984
BssMI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
BssNI GRCGYC 1 cut(s) 486
BssT1I CCWWGG 2 cut(s) 609, 984
Bst4CI ACNGT 3 cut(s) 26, 32, 665
Bst6I CTCTTC 5 cut(s) 230, 429, 529, 576, 927
BstACI GRCGYC 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 745
BstC8I GCNNGC 1 cut(s) 804
BstDEI CTNAG 2 cut(s) 204, 324
BstDSI CCRYGG 2 cut(s) 609, 984
BstENI CCTNNNNNAGG 1 cut(s) 686
BstF5I GGATG 3 cut(s) 163, 217, 370
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 7 cut(s) 138, 184, 370, 616, 832, 916, 943
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
BstMWI GCNNNNNNNGC 1 cut(s) 745
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 1 cut(s) 734
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 2 cut(s) 274, 680
BstV1I GCAGC 3 cut(s) 49, 111, 341
BstX2I RGATCY 3 cut(s) 613, 829, 913
BstYI RGATCY 3 cut(s) 613, 829, 913
BsuRI GGCC 2 cut(s) 778, 794
BtgI CCRYGG 2 cut(s) 609, 984
BtsCI GGATG 3 cut(s) 163, 217, 370
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 31, 316, 670
BveI ACCTGC 2 cut(s) 283, 292
Cac8I GCNNGC 1 cut(s) 804
CaiI CAGNNNCTG 3 cut(s) 380, 533, 748
CciI TCATGA 1 cut(s) 937
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 4 cut(s) 388, 759, 777, 793
CseI GACGC 1 cut(s) 494
Csp6I GTAC 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 646, 681
CviAII CATG 7 cut(s) 170, 397, 463, 610, 895, 938, 985
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 2 cut(s) 204, 324
DpnI GATC 7 cut(s) 137, 183, 369, 615, 831, 915, 942
DpnII GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
Eam1104I CTCTTC 5 cut(s) 230, 429, 529, 576, 927
EarI CTCTTC 5 cut(s) 230, 429, 529, 576, 927
Ecl136II GAGCTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 609, 984
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 388, 759
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 3 cut(s) 300, 510, 645
EcoICRI GAGCTC 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 609, 984
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 2 cut(s) 609, 984
FaeI CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 7 cut(s) 169, 396, 462, 609, 894, 937, 984
FbaI TGATCA 4 cut(s) 135, 181, 367, 940
Fnu4HI GCNGC 4 cut(s) 60, 63, 100, 330
FokI GGATG 3 cut(s) 150, 204, 357
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 4 cut(s) 60, 63, 100, 330
FspBI CTAG 4 cut(s) 93, 291, 537, 803
GlaI GCGC 1 cut(s) 384
GluI GCNGC 4 cut(s) 60, 63, 100, 330
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 2 cut(s) 778, 794
HapII CCGG 1 cut(s) 736
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 385
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 4 cut(s) 12, 47, 530, 815
HpaII CCGG 1 cut(s) 736
HphI GGTGA 3 cut(s) 563, 920, 935
Hpy188I TCNGA 5 cut(s) 79, 325, 529, 790, 889
Hpy188III TCNNGA 6 cut(s) 44, 185, 374, 578, 762, 938
HpyAV CCTTC 3 cut(s) 460, 894, 988
HpyCH4III ACNGT 3 cut(s) 26, 32, 665
HpyCH4V TGCA 4 cut(s) 309, 898, 965, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 745
HpyF3I CTNAG 2 cut(s) 204, 324
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
HspAI GCGC 1 cut(s) 383
Ksp22I TGATCA 4 cut(s) 135, 181, 367, 940
Kzo9I GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
LguI GCTCTTC 1 cut(s) 429
Lsp1109I GCAGC 3 cut(s) 49, 111, 341
LweI GCATC 3 cut(s) 405, 580, 748
MaeI CTAG 4 cut(s) 93, 291, 537, 803
MaeIII GTNAC 3 cut(s) 20, 26, 294
MalI GATC 7 cut(s) 137, 183, 369, 615, 831, 915, 942
MboI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
MboII GAAGA 9 cut(s) 42, 217, 446, 516, 593, 638, 712, 715, 914
MfeI CAATTG 1 cut(s) 253
MflI RGATCY 3 cut(s) 613, 829, 913
MhlI GDGCHC 3 cut(s) 274, 441, 680
MluCI AATT 5 cut(s) 73, 253, 319, 517, 692
MmeI TCCRAC 2 cut(s) 501, 941
MseI TTAA 2 cut(s) 260, 834
MslI CAYNNNNRTG 2 cut(s) 168, 936
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 736
MspR9I CCNGG 1 cut(s) 736
MunI CAATTG 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 745
NciI CCSGG 1 cut(s) 736
NcoI CCATGG 2 cut(s) 609, 984
NdeII GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
NheI GCTAGC 1 cut(s) 802
NlaIII CATG 7 cut(s) 173, 400, 466, 613, 898, 941, 988
NlaIV GGNNCC 4 cut(s) 273, 615, 679, 915
NmeAIII GCCGAG 1 cut(s) 982
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 898
PagI TCATGA 1 cut(s) 937
PaqCI CACCTGC 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 429
PfeI GAWTC 4 cut(s) 12, 47, 530, 815
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 4 cut(s) 61, 64, 101, 331
PsiI TTATAA 2 cut(s) 318, 771
Psp124BI GAGCTC 1 cut(s) 441
PspN4I GGNNCC 4 cut(s) 273, 615, 679, 915
PspPI GGNCC 4 cut(s) 388, 759, 777, 793
PstI CTGCAG 1 cut(s) 311
PstNI CAGNNNCTG 3 cut(s) 380, 533, 748
PsuI RGATCY 3 cut(s) 613, 829, 913
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
RseI CAYNNNNRTG 2 cut(s) 168, 936
SacI GAGCTC 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 260, 834
SatI GCNGC 4 cut(s) 60, 63, 100, 330
Sau3AI GATC 7 cut(s) 135, 181, 367, 613, 829, 913, 940
Sau96I GGNCC 4 cut(s) 388, 759, 777, 793
ScrFI CCNGG 1 cut(s) 736
SduI GDGCHC 3 cut(s) 274, 441, 680
SfaNI GCATC 3 cut(s) 405, 580, 748
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 388, 759
SmiMI CAYNNNNRTG 2 cut(s) 168, 936
SmlI CTYRAG 2 cut(s) 618, 683
SmoI CTYRAG 2 cut(s) 618, 683
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 5 cut(s) 73, 253, 319, 517, 692
SsiI CCGC 2 cut(s) 60, 167
SspI AATATT 1 cut(s) 145
SspMI CTAG 4 cut(s) 93, 291, 537, 803
SstI GAGCTC 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 734
StyI CCWWGG 2 cut(s) 609, 984
TaaI ACNGT 3 cut(s) 26, 32, 665
TasI AATT 5 cut(s) 73, 253, 319, 517, 692
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 4 cut(s) 12, 47, 530, 815
Tru1I TTAA 2 cut(s) 260, 834
Tru9I TTAA 2 cut(s) 260, 834
TscAI CASTG 3 cut(s) 31, 316, 670
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 62, 99, 329
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 7 cut(s) 17, 86, 385, 713, 844, 914, 984
TspRI CASTG 3 cut(s) 31, 316, 670
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 2 cut(s) 388, 759
XagI CCTNNNNNAGG 1 cut(s) 686
XapI RAATTY 2 cut(s) 73, 692
XceI RCATGY 1 cut(s) 898
XspI CTAG 4 cut(s) 93, 291, 537, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.