Rh5DG017700

homeobox protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
1361681 .. 1365945
4265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG017700.1

Sequence Viewer

Length: 1155 bp
ATGCAGGGTGGCTCTAATGGCACTAATTCGATGGCGTTTGGAGATAACAGTACTAACACTAACGGCGGAGGAGGGCTGTTTCCGATGACGATGATGATGCCTCTGATGACTACTAACTCCCAGCACCATCATGGTCATCACTCGCTTCACTCGAATAACAGTCCGTTTCTTCTGCTACCTCCAAACCAAAACAATCATCAGCAAGACCAAACCCGCAATAGCAGCGGCGGCAGCTCATCTTTTGCTCTTGATAACCATAGCAATAACCCTGCAGCGGCGGCAGGCTGTTATTTCATGGATCACAACAACAACAGTGGTCATGGAAGCTCTTCTTCCTCTTCGTCTTCTTATATCAAGTCAAAGATCATGGCTCATCCTCACTATCACCGTCTCCTGGCCGCCTACATCAACTGTCAAAAGGTTGGGGCGCCACCGGAGGTGGTGGGGAGGCTGGAAGAAGCATGCGAGTCGGCGACGACGATAGGTCAGATGGTAAGTAGTAGTAGTGGAAGTGCACATGGACATGGTTCCCTTGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTGATCAAGTATGAGCAAGAGGTCTCCAAACCCTTCAAGGAAGCCATGCTTTTTTTAAAGAAGATCGAGTCCCAATTCAAAACCCTCACCGTTTCTTCTGCTTCCGATTCTGGTTGTGGAGAGGGAGGTATGGATAGGAACAATAATGGATCATCTGAAGAAGAGGTTGATGTGAATAACAGCTTGATAGATCCGCAAGCAGATGATAGGGAGCTCAAAGGTCAGCTTCTGCGCAAGTACAGTGGATACTTGGGTAGCTTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAAGAGGCGAGGCAGCAGTTGCTCGATTGGTGGAGCCGACATTACAAATGGCCTTATCCATCAGAGTCCCAGAAGTTGGCTCTTGCAGAATCAACAGGTCTGGACCAGAAGCAAATAAACAACTGGTTTATCAACCAAAGGAAACGCCATTGGAAGCCTTCGGAGGATATGCAGTTTGTGGTGATGGATGCTTCTCATCCCACCCACTATTACATGGACAATGTCTTGGGAAATCCTTTTCCTATGGACATTTCTCCCTCATTGCTCTGA

Protein Analysis

384

Amino Acids

42.53

Weight (kDa)

6.43

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 118 - 156 8.4e-21 KNOX1 domain
KNOX2 PF03791 178 - 224 2.8e-21 KNOX2 domain
ELK PF03789 265 - 286 4.5e-11 ELK domain
Homeobox_KN PF05920 305 - 344 1.1e-18 Homeobox KN domain
Homeodomain PF00046 312 - 345 9.2e-07 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 427
AccB7I CCANNNNNTGG 1 cut(s) 961
AciI CCGC 8 cut(s) 66, 214, 225, 228, 275, 278, 399, 776
AclWI GGATC 5 cut(s) 306, 536, 561, 739, 767
AcoI YGGCCR 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 2 cut(s) 52, 821
AfiI CCNNNNNNNGG 3 cut(s) 274, 394, 961
AgsI TTSAA 3 cut(s) 619, 661, 844
AhdI GACNNNNNGTC 1 cut(s) 483
AjnI CCWGG 1 cut(s) 393
AluBI AGCT 8 cut(s) 234, 327, 548, 765, 796, 808, 840, 880
AluI AGCT 8 cut(s) 234, 327, 548, 765, 796, 808, 840, 880
Alw21I GWGCWC 2 cut(s) 517, 798
Alw26I GTCTC 2 cut(s) 395, 610
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 5 cut(s) 306, 536, 561, 739, 767
AlwNI CAGNNNCTG 1 cut(s) 811
AoxI GGCC 3 cut(s) 396, 567, 935
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 5 cut(s) 222, 231, 272, 880, 898
Asp700I GAANNNNTTC 1 cut(s) 328
AspLEI GCGC 2 cut(s) 430, 816
AspS9I GGNCC 1 cut(s) 988
AsuHPI GGTGA 4 cut(s) 377, 548, 661, 1078
AvaII GGWCC 1 cut(s) 988
BaeGI GKGCMC 1 cut(s) 517
BaeI ACNNNNGTAYC 2 cut(s) 820, 853
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 517, 798
BbvI GCAGC 5 cut(s) 234, 243, 284, 867, 910
BccI CCATC 5 cut(s) 25, 135, 484, 952, 1063
BceAI ACGGC 1 cut(s) 79
BcgI CGANNNNNNTGC 4 cut(s) 79, 113, 450, 484
BciT130I CCWGG 1 cut(s) 395
BciVI GTATCC 1 cut(s) 821
BclI TGATCA 1 cut(s) 585
BcoDI GTCTC 2 cut(s) 395, 610
BfmI CTRYAG 1 cut(s) 270
BfoI RGCGCY 1 cut(s) 431
BfuI GTATCC 1 cut(s) 821
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 988
BmeRI GACNNNNNGTC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 988
BmiI GGNNCC 3 cut(s) 429, 529, 920
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 3 cut(s) 87, 570, 1063
BpiI GAAGAC 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 532
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 394, 961
Bse1I ACTGG 1 cut(s) 1013
Bse3DI GCAATG 1 cut(s) 1145
Bse8I GATNNNNATC 1 cut(s) 584
BseBI CCWGG 1 cut(s) 395
BseDI CCNNGG 1 cut(s) 532
BseGI GGATG 3 cut(s) 373, 1078, 1081
BseJI GATNNNNATC 1 cut(s) 584
BseLI CCNNNNNNNGG 3 cut(s) 274, 394, 961
BseMI GCAATG 1 cut(s) 1145
BseNI ACTGG 1 cut(s) 1013
BseRI GAGGAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 5 cut(s) 234, 243, 284, 867, 910
BseYI CCCAGC 1 cut(s) 120
BshFI GGCC 3 cut(s) 398, 569, 937
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 2 cut(s) 517, 798
BsiSI CCGG 1 cut(s) 434
BslFI GGGAC 2 cut(s) 637, 937
BslI CCNNNNNNNGG 3 cut(s) 274, 394, 961
BsmAI GTCTC 2 cut(s) 395, 610
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 2 cut(s) 637, 937
BsnI GGCC 3 cut(s) 398, 569, 937
Bso31I GGTCTC 1 cut(s) 610
Bsp1286I GDGCHC 2 cut(s) 517, 798
Bsp143I GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
BspACI CCGC 8 cut(s) 66, 214, 225, 228, 275, 278, 399, 776
BspANI GGCC 3 cut(s) 398, 569, 937
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 3 cut(s) 429, 529, 920
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 5 cut(s) 306, 536, 561, 739, 767
BspQI GCTCTTC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 1145
BsrI ACTGG 1 cut(s) 1013
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 395
Bst4CI ACNGT 8 cut(s) 50, 161, 314, 389, 413, 575, 673, 824
Bst6I CTCTTC 4 cut(s) 334, 343, 738, 857
BstACI GRCGYC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 904
BstC8I GCNNGC 4 cut(s) 283, 463, 780, 878
BstF5I GGATG 3 cut(s) 373, 1078, 1081
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 430, 816
BstKTI GATC 8 cut(s) 301, 366, 544, 556, 588, 648, 734, 775
BstMAI GTCTC 2 cut(s) 395, 610
BstMBI GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
BstMWI GCNNNNNNNGC 6 cut(s) 18, 222, 228, 231, 278, 904
BstNI CCWGG 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 517
BstV1I GCAGC 5 cut(s) 234, 243, 284, 867, 910
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 2 cut(s) 541, 772
BstYI RGATCY 2 cut(s) 541, 772
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 3 cut(s) 398, 569, 937
BtsCI GGATG 3 cut(s) 373, 1078, 1081
BtsIMutI CAGTG 2 cut(s) 319, 829
Cac8I GCNNGC 4 cut(s) 283, 463, 780, 878
CaiI CAGNNNCTG 1 cut(s) 811
CciI TCATGA 1 cut(s) 855
CfoI GCGC 2 cut(s) 430, 816
Cfr13I GGNCC 1 cut(s) 988
Csp6I GTAC 2 cut(s) 51, 820
CspCI CAANNNNNGTGG 4 cut(s) 295, 330, 805, 840
CviQI GTAC 2 cut(s) 51, 820
DinI GGCGCC 1 cut(s) 429
DpnI GATC 8 cut(s) 300, 365, 543, 555, 587, 647, 733, 774
DpnII GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
DraI TTTAAA 1 cut(s) 639
DriI GACNNNNNGTC 1 cut(s) 483
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 4 cut(s) 334, 343, 738, 857
Eam1105I GACNNNNNGTC 1 cut(s) 483
EarI CTCTTC 4 cut(s) 334, 343, 738, 857
EciI GGCGGA 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 532
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 1 cut(s) 798
Eco31I GGTCTC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 988
Eco53kI GAGCTC 1 cut(s) 796
Eco57I CTGAAG 1 cut(s) 759
EcoICRI GAGCTC 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 798
EgeI GGCGCC 1 cut(s) 429
EheI GGCGCC 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 532
Esp3I CGTCTC 1 cut(s) 395
FalI AAGNNNNNCTT 6 cut(s) 316, 348, 615, 647, 792, 824
FaqI GGGAC 2 cut(s) 637, 937
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 585
FokI GGATG 3 cut(s) 360, 1068, 1085
FriOI GRGCYC 1 cut(s) 798
FspI TGCGCA 1 cut(s) 815
GlaI GCGC 2 cut(s) 429, 815
GsaI CCCAGC 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 3 cut(s) 398, 569, 937
HapII CCGG 1 cut(s) 434
HhaI GCGC 2 cut(s) 430, 816
Hin1I GRCGYC 1 cut(s) 428
Hin6I GCGC 2 cut(s) 428, 814
HinP1I GCGC 2 cut(s) 428, 814
HinfI GANTC 5 cut(s) 467, 650, 689, 950, 974
HpaII CCGG 1 cut(s) 434
HphI GGTGA 4 cut(s) 377, 548, 661, 1078
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 8 cut(s) 84, 105, 489, 688, 739, 949, 1048, 1154
Hpy188III TCNNGA 4 cut(s) 248, 551, 856, 986
Hpy8I GTNNAC 1 cut(s) 515
Hpy99I CGWCG 2 cut(s) 478, 481
HpyAV CCTTC 2 cut(s) 625, 1053
HpyCH4III ACNGT 8 cut(s) 50, 161, 314, 389, 413, 575, 673, 824
HpyCH4V TGCA 5 cut(s) 4, 272, 515, 971, 1057
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 222, 228, 231, 278, 904
Hsp92I GRCGYC 1 cut(s) 428
HspAI GCGC 2 cut(s) 428, 814
KasI GGCGCC 1 cut(s) 427
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
LguI GCTCTTC 1 cut(s) 334
LmnI GCTCC 2 cut(s) 793, 918
Lsp1109I GCAGC 5 cut(s) 234, 243, 284, 867, 910
LweI GCATC 3 cut(s) 87, 570, 1063
MalI GATC 8 cut(s) 300, 365, 543, 555, 587, 647, 733, 774
MboI GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
MflI RGATCY 2 cut(s) 541, 772
MhlI GDGCHC 2 cut(s) 517, 798
MluCI AATT 2 cut(s) 25, 656
Mly113I GGCGCC 1 cut(s) 428
MlyI GAGTC 3 cut(s) 476, 659, 959
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 2 cut(s) 129, 522
MspA1I CMGCKG 2 cut(s) 225, 275
MspI CCGG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 395
MvaI CCWGG 1 cut(s) 395
MwoI GCNNNNNNNGC 6 cut(s) 18, 222, 228, 231, 278, 904
NarI GGCGCC 1 cut(s) 428
NdeII GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
NlaIV GGNNCC 3 cut(s) 429, 529, 920
NsbI TGCGCA 1 cut(s) 815
NspI RCATGY 1 cut(s) 465
PaeI GCATGC 1 cut(s) 465
PagI TCATGA 1 cut(s) 855
PceI AGGCCT 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 476
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 689, 974
PflFI GACNNNGTC 1 cut(s) 1106
PflMI CCANNNNNTGG 1 cut(s) 961
PleI GAGTC 3 cut(s) 475, 658, 958
PluTI GGCGCC 1 cut(s) 431
PpsI GAGTC 3 cut(s) 475, 658, 958
Psp124BI GAGCTC 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 393
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 393
PspN4I GGNNCC 3 cut(s) 429, 529, 920
PspPI GGNCC 1 cut(s) 988
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 2 cut(s) 541, 772
PsyI GACNNNGTC 1 cut(s) 1106
RsaI GTAC 2 cut(s) 52, 821
RsaNI GTAC 2 cut(s) 51, 820
RseI CAYNNNNRTG 2 cut(s) 129, 522
SacI GAGCTC 1 cut(s) 798
SapI GCTCTTC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 638
Sau3AI GATC 8 cut(s) 298, 363, 541, 553, 585, 645, 731, 772
Sau96I GGNCC 1 cut(s) 988
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 3 cut(s) 476, 659, 959
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 2 cut(s) 517, 798
SfaNI GCATC 3 cut(s) 87, 570, 1063
SfcI CTRYAG 1 cut(s) 270
SfoI GGCGCC 1 cut(s) 429
SinI GGWCC 1 cut(s) 988
SmiMI CAYNNNNRTG 2 cut(s) 129, 522
SphI GCATGC 1 cut(s) 465
Sse9I AATT 2 cut(s) 25, 656
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 8 cut(s) 66, 214, 225, 228, 275, 278, 399, 776
SspDI GGCGCC 1 cut(s) 427
SstI GAGCTC 1 cut(s) 798
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 8 cut(s) 50, 161, 314, 389, 413, 575, 673, 824
TaqI TCGA 4 cut(s) 29, 152, 648, 909
TasI AATT 2 cut(s) 25, 656
TatI WGTACW 2 cut(s) 50, 819
TauI GCSGC 5 cut(s) 228, 231, 278, 281, 401
TfiI GAWTC 2 cut(s) 689, 974
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 2 cut(s) 319, 829
TseI GCWGC 5 cut(s) 222, 231, 272, 880, 898
TspDTI ATGAA 4 cut(s) 283, 550, 844, 872
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 2 cut(s) 319, 829
Tth111I GACNNNGTC 1 cut(s) 1106
Van91I CCANNNNNTGG 1 cut(s) 961
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 988
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.