homeobox protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G62360 |
| fragaria_vesca | FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570 |
| malus_domestica | MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1 |
| prunus_persica | Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1 |
| pyrus_communis | pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700 |
| rosa_chinensis | RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121 |
| rosa_laevigata | RLG00000021086 RLG00000030997 |
| rosa_multiflora | Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00073790 Rroxscaffold_2G00091400 |
| rosa_rugosa | Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500 |
| rosa_samantha | Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700 |
| rosa_wichuraiana | Rw2G044280 Rw5G001580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 815 |
| AccB1I | GGYRCC | 1 cut(s) | 427 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 961 |
| AciI | CCGC | 8 cut(s) | 66, 214, 225, 228, 275, 278, 399, 776 |
| AclWI | GGATC | 5 cut(s) | 306, 536, 561, 739, 767 |
| AcoI | YGGCCR | 1 cut(s) | 396 |
| AcuI | CTGAAG | 1 cut(s) | 759 |
| AcyI | GRCGYC | 1 cut(s) | 428 |
| AfaI | GTAC | 2 cut(s) | 52, 821 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 274, 394, 961 |
| AgsI | TTSAA | 3 cut(s) | 619, 661, 844 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 483 |
| AjnI | CCWGG | 1 cut(s) | 393 |
| AluBI | AGCT | 8 cut(s) | 234, 327, 548, 765, 796, 808, 840, 880 |
| AluI | AGCT | 8 cut(s) | 234, 327, 548, 765, 796, 808, 840, 880 |
| Alw21I | GWGCWC | 2 cut(s) | 517, 798 |
| Alw26I | GTCTC | 2 cut(s) | 395, 610 |
| Alw44I | GTGCAC | 1 cut(s) | 513 |
| AlwI | GGATC | 5 cut(s) | 306, 536, 561, 739, 767 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 811 |
| AoxI | GGCC | 3 cut(s) | 396, 567, 935 |
| ApaLI | GTGCAC | 1 cut(s) | 513 |
| ApeKI | GCWGC | 5 cut(s) | 222, 231, 272, 880, 898 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 328 |
| AspLEI | GCGC | 2 cut(s) | 430, 816 |
| AspS9I | GGNCC | 1 cut(s) | 988 |
| AsuHPI | GGTGA | 4 cut(s) | 377, 548, 661, 1078 |
| AvaII | GGWCC | 1 cut(s) | 988 |
| BaeGI | GKGCMC | 1 cut(s) | 517 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 820, 853 |
| BanI | GGYRCC | 1 cut(s) | 427 |
| BanII | GRGCYC | 1 cut(s) | 798 |
| BbsI | GAAGAC | 1 cut(s) | 336 |
| Bbv12I | GWGCWC | 2 cut(s) | 517, 798 |
| BbvI | GCAGC | 5 cut(s) | 234, 243, 284, 867, 910 |
| BccI | CCATC | 5 cut(s) | 25, 135, 484, 952, 1063 |
| BceAI | ACGGC | 1 cut(s) | 79 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 79, 113, 450, 484 |
| BciT130I | CCWGG | 1 cut(s) | 395 |
| BciVI | GTATCC | 1 cut(s) | 821 |
| BclI | TGATCA | 1 cut(s) | 585 |
| BcoDI | GTCTC | 2 cut(s) | 395, 610 |
| BfmI | CTRYAG | 1 cut(s) | 270 |
| BfoI | RGCGCY | 1 cut(s) | 431 |
| BfuI | GTATCC | 1 cut(s) | 821 |
| BmcAI | AGTACT | 1 cut(s) | 52 |
| Bme1390I | CCNGG | 1 cut(s) | 395 |
| Bme18I | GGWCC | 1 cut(s) | 988 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 483 |
| BmgT120I | GGNCC | 1 cut(s) | 988 |
| BmiI | GGNNCC | 3 cut(s) | 429, 529, 920 |
| BmrFI | CCNGG | 1 cut(s) | 395 |
| BmsI | GCATC | 3 cut(s) | 87, 570, 1063 |
| BpiI | GAAGAC | 1 cut(s) | 336 |
| BsaBI | GATNNNNATC | 1 cut(s) | 584 |
| BsaHI | GRCGYC | 1 cut(s) | 428 |
| BsaI | GGTCTC | 1 cut(s) | 610 |
| BsaJI | CCNNGG | 1 cut(s) | 532 |
| BsaWI | WCCGGW | 1 cut(s) | 433 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 274, 394, 961 |
| Bse1I | ACTGG | 1 cut(s) | 1013 |
| Bse3DI | GCAATG | 1 cut(s) | 1145 |
| Bse8I | GATNNNNATC | 1 cut(s) | 584 |
| BseBI | CCWGG | 1 cut(s) | 395 |
| BseDI | CCNNGG | 1 cut(s) | 532 |
| BseGI | GGATG | 3 cut(s) | 373, 1078, 1081 |
| BseJI | GATNNNNATC | 1 cut(s) | 584 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 274, 394, 961 |
| BseMI | GCAATG | 1 cut(s) | 1145 |
| BseNI | ACTGG | 1 cut(s) | 1013 |
| BseRI | GAGGAG | 1 cut(s) | 84 |
| BseSI | GKGCMC | 1 cut(s) | 517 |
| BseXI | GCAGC | 5 cut(s) | 234, 243, 284, 867, 910 |
| BseYI | CCCAGC | 1 cut(s) | 120 |
| BshFI | GGCC | 3 cut(s) | 398, 569, 937 |
| BshNI | GGYRCC | 1 cut(s) | 427 |
| BsiHKAI | GWGCWC | 2 cut(s) | 517, 798 |
| BsiSI | CCGG | 1 cut(s) | 434 |
| BslFI | GGGAC | 2 cut(s) | 637, 937 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 274, 394, 961 |
| BsmAI | GTCTC | 2 cut(s) | 395, 610 |
| BsmBI | CGTCTC | 1 cut(s) | 395 |
| BsmFI | GGGAC | 2 cut(s) | 637, 937 |
| BsnI | GGCC | 3 cut(s) | 398, 569, 937 |
| Bso31I | GGTCTC | 1 cut(s) | 610 |
| Bsp1286I | GDGCHC | 2 cut(s) | 517, 798 |
| Bsp143I | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| BspACI | CCGC | 8 cut(s) | 66, 214, 225, 228, 275, 278, 399, 776 |
| BspANI | GGCC | 3 cut(s) | 398, 569, 937 |
| BspHI | TCATGA | 1 cut(s) | 855 |
| BspLI | GGNNCC | 3 cut(s) | 429, 529, 920 |
| BspMAI | CTGCAG | 1 cut(s) | 274 |
| BspPI | GGATC | 5 cut(s) | 306, 536, 561, 739, 767 |
| BspQI | GCTCTTC | 1 cut(s) | 334 |
| BspT107I | GGYRCC | 1 cut(s) | 427 |
| BspTNI | GGTCTC | 1 cut(s) | 610 |
| BsrDI | GCAATG | 1 cut(s) | 1145 |
| BsrI | ACTGG | 1 cut(s) | 1013 |
| BssECI | CCNNGG | 1 cut(s) | 532 |
| BssMI | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| BssNI | GRCGYC | 1 cut(s) | 428 |
| BssT1I | CCWWGG | 1 cut(s) | 532 |
| Bst2UI | CCWGG | 1 cut(s) | 395 |
| Bst4CI | ACNGT | 8 cut(s) | 50, 161, 314, 389, 413, 575, 673, 824 |
| Bst6I | CTCTTC | 4 cut(s) | 334, 343, 738, 857 |
| BstACI | GRCGYC | 1 cut(s) | 428 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 904 |
| BstC8I | GCNNGC | 4 cut(s) | 283, 463, 780, 878 |
| BstF5I | GGATG | 3 cut(s) | 373, 1078, 1081 |
| BstH2I | RGCGCY | 1 cut(s) | 431 |
| BstHHI | GCGC | 2 cut(s) | 430, 816 |
| BstKTI | GATC | 8 cut(s) | 301, 366, 544, 556, 588, 648, 734, 775 |
| BstMAI | GTCTC | 2 cut(s) | 395, 610 |
| BstMBI | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 18, 222, 228, 231, 278, 904 |
| BstNI | CCWGG | 1 cut(s) | 395 |
| BstNSI | RCATGY | 1 cut(s) | 465 |
| BstSCI | CCNGG | 1 cut(s) | 393 |
| BstSFI | CTRYAG | 1 cut(s) | 270 |
| BstSLI | GKGCMC | 1 cut(s) | 517 |
| BstV1I | GCAGC | 5 cut(s) | 234, 243, 284, 867, 910 |
| BstV2I | GAAGAC | 1 cut(s) | 336 |
| BstX2I | RGATCY | 2 cut(s) | 541, 772 |
| BstYI | RGATCY | 2 cut(s) | 541, 772 |
| BsuI | GTATCC | 1 cut(s) | 821 |
| BsuRI | GGCC | 3 cut(s) | 398, 569, 937 |
| BtsCI | GGATG | 3 cut(s) | 373, 1078, 1081 |
| BtsIMutI | CAGTG | 2 cut(s) | 319, 829 |
| Cac8I | GCNNGC | 4 cut(s) | 283, 463, 780, 878 |
| CaiI | CAGNNNCTG | 1 cut(s) | 811 |
| CciI | TCATGA | 1 cut(s) | 855 |
| CfoI | GCGC | 2 cut(s) | 430, 816 |
| Cfr13I | GGNCC | 1 cut(s) | 988 |
| Csp6I | GTAC | 2 cut(s) | 51, 820 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 295, 330, 805, 840 |
| CviQI | GTAC | 2 cut(s) | 51, 820 |
| DinI | GGCGCC | 1 cut(s) | 429 |
| DpnI | GATC | 8 cut(s) | 300, 365, 543, 555, 587, 647, 733, 774 |
| DpnII | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| DraI | TTTAAA | 1 cut(s) | 639 |
| DriI | GACNNNNNGTC | 1 cut(s) | 483 |
| EaeI | YGGCCR | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 4 cut(s) | 334, 343, 738, 857 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 483 |
| EarI | CTCTTC | 4 cut(s) | 334, 343, 738, 857 |
| EciI | GGCGGA | 1 cut(s) | 81 |
| Ecl136II | GAGCTC | 1 cut(s) | 796 |
| Eco130I | CCWWGG | 1 cut(s) | 532 |
| Eco147I | AGGCCT | 1 cut(s) | 569 |
| Eco24I | GRGCYC | 1 cut(s) | 798 |
| Eco31I | GGTCTC | 1 cut(s) | 610 |
| Eco47I | GGWCC | 1 cut(s) | 988 |
| Eco53kI | GAGCTC | 1 cut(s) | 796 |
| Eco57I | CTGAAG | 1 cut(s) | 759 |
| EcoICRI | GAGCTC | 1 cut(s) | 796 |
| EcoRII | CCWGG | 1 cut(s) | 393 |
| EcoT14I | CCWWGG | 1 cut(s) | 532 |
| EcoT38I | GRGCYC | 1 cut(s) | 798 |
| EgeI | GGCGCC | 1 cut(s) | 429 |
| EheI | GGCGCC | 1 cut(s) | 429 |
| ErhI | CCWWGG | 1 cut(s) | 532 |
| Esp3I | CGTCTC | 1 cut(s) | 395 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 316, 348, 615, 647, 792, 824 |
| FaqI | GGGAC | 2 cut(s) | 637, 937 |
| FauI | CCCGC | 1 cut(s) | 221 |
| FbaI | TGATCA | 1 cut(s) | 585 |
| FokI | GGATG | 3 cut(s) | 360, 1068, 1085 |
| FriOI | GRGCYC | 1 cut(s) | 798 |
| FspI | TGCGCA | 1 cut(s) | 815 |
| GlaI | GCGC | 2 cut(s) | 429, 815 |
| GsaI | CCCAGC | 1 cut(s) | 124 |
| HaeII | RGCGCY | 1 cut(s) | 431 |
| HaeIII | GGCC | 3 cut(s) | 398, 569, 937 |
| HapII | CCGG | 1 cut(s) | 434 |
| HhaI | GCGC | 2 cut(s) | 430, 816 |
| Hin1I | GRCGYC | 1 cut(s) | 428 |
| Hin6I | GCGC | 2 cut(s) | 428, 814 |
| HinP1I | GCGC | 2 cut(s) | 428, 814 |
| HinfI | GANTC | 5 cut(s) | 467, 650, 689, 950, 974 |
| HpaII | CCGG | 1 cut(s) | 434 |
| HphI | GGTGA | 4 cut(s) | 377, 548, 661, 1078 |
| Hpy166II | GTNNAC | 1 cut(s) | 515 |
| Hpy188I | TCNGA | 8 cut(s) | 84, 105, 489, 688, 739, 949, 1048, 1154 |
| Hpy188III | TCNNGA | 4 cut(s) | 248, 551, 856, 986 |
| Hpy8I | GTNNAC | 1 cut(s) | 515 |
| Hpy99I | CGWCG | 2 cut(s) | 478, 481 |
| HpyAV | CCTTC | 2 cut(s) | 625, 1053 |
| HpyCH4III | ACNGT | 8 cut(s) | 50, 161, 314, 389, 413, 575, 673, 824 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 272, 515, 971, 1057 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 18, 222, 228, 231, 278, 904 |
| Hsp92I | GRCGYC | 1 cut(s) | 428 |
| HspAI | GCGC | 2 cut(s) | 428, 814 |
| KasI | GGCGCC | 1 cut(s) | 427 |
| Ksp22I | TGATCA | 1 cut(s) | 585 |
| Kzo9I | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| LguI | GCTCTTC | 1 cut(s) | 334 |
| LmnI | GCTCC | 2 cut(s) | 793, 918 |
| Lsp1109I | GCAGC | 5 cut(s) | 234, 243, 284, 867, 910 |
| LweI | GCATC | 3 cut(s) | 87, 570, 1063 |
| MalI | GATC | 8 cut(s) | 300, 365, 543, 555, 587, 647, 733, 774 |
| MboI | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| MflI | RGATCY | 2 cut(s) | 541, 772 |
| MhlI | GDGCHC | 2 cut(s) | 517, 798 |
| MluCI | AATT | 2 cut(s) | 25, 656 |
| Mly113I | GGCGCC | 1 cut(s) | 428 |
| MlyI | GAGTC | 3 cut(s) | 476, 659, 959 |
| MroXI | GAANNNNTTC | 1 cut(s) | 328 |
| MseI | TTAA | 1 cut(s) | 638 |
| MslI | CAYNNNNRTG | 2 cut(s) | 129, 522 |
| MspA1I | CMGCKG | 2 cut(s) | 225, 275 |
| MspI | CCGG | 1 cut(s) | 434 |
| MspR9I | CCNGG | 1 cut(s) | 395 |
| MvaI | CCWGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 18, 222, 228, 231, 278, 904 |
| NarI | GGCGCC | 1 cut(s) | 428 |
| NdeII | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| NlaIV | GGNNCC | 3 cut(s) | 429, 529, 920 |
| NsbI | TGCGCA | 1 cut(s) | 815 |
| NspI | RCATGY | 1 cut(s) | 465 |
| PaeI | GCATGC | 1 cut(s) | 465 |
| PagI | TCATGA | 1 cut(s) | 855 |
| PceI | AGGCCT | 1 cut(s) | 569 |
| PciSI | GCTCTTC | 1 cut(s) | 334 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 149, 476 |
| PdmI | GAANNNNTTC | 1 cut(s) | 328 |
| PfeI | GAWTC | 2 cut(s) | 689, 974 |
| PflFI | GACNNNGTC | 1 cut(s) | 1106 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 961 |
| PleI | GAGTC | 3 cut(s) | 475, 658, 958 |
| PluTI | GGCGCC | 1 cut(s) | 431 |
| PpsI | GAGTC | 3 cut(s) | 475, 658, 958 |
| Psp124BI | GAGCTC | 1 cut(s) | 798 |
| Psp6I | CCWGG | 1 cut(s) | 393 |
| PspFI | CCCAGC | 1 cut(s) | 120 |
| PspGI | CCWGG | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 3 cut(s) | 429, 529, 920 |
| PspPI | GGNCC | 1 cut(s) | 988 |
| PstI | CTGCAG | 1 cut(s) | 274 |
| PstNI | CAGNNNCTG | 1 cut(s) | 811 |
| PsuI | RGATCY | 2 cut(s) | 541, 772 |
| PsyI | GACNNNGTC | 1 cut(s) | 1106 |
| RsaI | GTAC | 2 cut(s) | 52, 821 |
| RsaNI | GTAC | 2 cut(s) | 51, 820 |
| RseI | CAYNNNNRTG | 2 cut(s) | 129, 522 |
| SacI | GAGCTC | 1 cut(s) | 798 |
| SapI | GCTCTTC | 1 cut(s) | 334 |
| SaqAI | TTAA | 1 cut(s) | 638 |
| Sau3AI | GATC | 8 cut(s) | 298, 363, 541, 553, 585, 645, 731, 772 |
| Sau96I | GGNCC | 1 cut(s) | 988 |
| ScaI | AGTACT | 1 cut(s) | 52 |
| SchI | GAGTC | 3 cut(s) | 476, 659, 959 |
| ScrFI | CCNGG | 1 cut(s) | 395 |
| SduI | GDGCHC | 2 cut(s) | 517, 798 |
| SfaNI | GCATC | 3 cut(s) | 87, 570, 1063 |
| SfcI | CTRYAG | 1 cut(s) | 270 |
| SfoI | GGCGCC | 1 cut(s) | 429 |
| SinI | GGWCC | 1 cut(s) | 988 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 129, 522 |
| SphI | GCATGC | 1 cut(s) | 465 |
| Sse9I | AATT | 2 cut(s) | 25, 656 |
| SseBI | AGGCCT | 1 cut(s) | 569 |
| SsiI | CCGC | 8 cut(s) | 66, 214, 225, 228, 275, 278, 399, 776 |
| SspDI | GGCGCC | 1 cut(s) | 427 |
| SstI | GAGCTC | 1 cut(s) | 798 |
| StuI | AGGCCT | 1 cut(s) | 569 |
| StyD4I | CCNGG | 1 cut(s) | 393 |
| StyI | CCWWGG | 1 cut(s) | 532 |
| TaaI | ACNGT | 8 cut(s) | 50, 161, 314, 389, 413, 575, 673, 824 |
| TaqI | TCGA | 4 cut(s) | 29, 152, 648, 909 |
| TasI | AATT | 2 cut(s) | 25, 656 |
| TatI | WGTACW | 2 cut(s) | 50, 819 |
| TauI | GCSGC | 5 cut(s) | 228, 231, 278, 281, 401 |
| TfiI | GAWTC | 2 cut(s) | 689, 974 |
| Tru1I | TTAA | 1 cut(s) | 638 |
| Tru9I | TTAA | 1 cut(s) | 638 |
| TscAI | CASTG | 2 cut(s) | 319, 829 |
| TseI | GCWGC | 5 cut(s) | 222, 231, 272, 880, 898 |
| TspDTI | ATGAA | 4 cut(s) | 283, 550, 844, 872 |
| TspGWI | ACGGA | 1 cut(s) | 153 |
| TspRI | CASTG | 2 cut(s) | 319, 829 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1106 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 961 |
| VneI | GTGCAC | 1 cut(s) | 513 |
| VpaK11BI | GGWCC | 1 cut(s) | 988 |
| XceI | RCATGY | 1 cut(s) | 465 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 128 |
| XmnI | GAANNNNTTC | 1 cut(s) | 328 |
| ZrmI | AGTACT | 1 cut(s) | 52 |