FvH4_6g42570

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002529
Physical Location & Seq
Forward (+)
33145408 .. 33149081
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42570.t1

Sequence Viewer

Length: 1083 bp
ATGGAGAGTGAGAGATGGTCTAGGGTTCCGAAAGGTAGAGAGACAGAGAAGATGGAGAGTGGGATGGGTAAGAGCAATTATTACTATAGTCATGGTGTGATGGGATCAGCTGGGTCTTCTTCTGGGATGTTGATGCCTCCTCCTCTTGTGAATTCTTATGCTGCTGCTGCTGCAGATCAGACTAGTAGTTCTAGTAACCATCAGCACTGCTTTGTTTCTCTGCCTTTTACCAACATTAATCCAAACCAAAATGGTAGTCAGGAATATGAGATGAGAATGAAAACTAAGGTCATGAGTCATCCTCTCTTCCCTCGCCTCTTGGCCTCTTATGTCAATTGTCAAAAGGTTGGGGCTCCTGCTGAAGTGGTGGCTAGGTTAGAGGATGCGGCTGCGGCCTCAATATCTTCTTCGGCTGCTCTTTCTGCAGCATGTGAAGAATCAGAACCAGACCCAGAGCTGGATCAGTTCATGGAGGCCTATTGTGAGATGCTTACCAAGTACCATGAAGAGCTTACAAAACCCTTCCATGAAGCCATGCTTGGCCTCTCTAAAATCAACTCCCAGCTCAAAGCTCTGTCCGTTTCACCATCATATTCTGCTAGTACTGGTGATCTTGTTGGACAAGGTGGCTCTTCAGAAGAGGCTGGTGTGAATGAAAATTGCATAGATCCAAGAGCCAAAGATTGGGATATTAGAGCTAAGCTTCTGCAAAAGTACGGTGGATCTCTTGGCAGTCTCAGCCAGGAGTTAAAGAAGAAGAAGAAGAACGGAAAGTTGCCCAAGGAAGCCCGGGTTCAGTTGCAAGAATGGTGGAGCAGAAATTACACATGGCCCTATCCATCGGAGCCTCAAAAGCTAGCCCTAGCAGCATCTACAGGTCTGACTGTGAAGCAGATAAACAACTGGTTCATAAACCAAAGGAAACGCCATTGGAAACCGTCTGCGGAGGGTATGCAACTTGCTATGGTGGATCATTCCTTCCAAAAAATGGTGGATCATCCCCAATTCTTCTACAATTATATGGACCATCTCATATGTAATCCATCACCTATGGATTGCACGTCTACTCCTATGGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

361

Amino Acids

40.03

Weight (kDa)

6.57

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 93 - 132 3.7e-18 KNOX1 domain
KNOX2 PF03791 149 - 192 4.6e-20 KNOX2 domain
Homeobox_KN PF05920 270 - 309 1.4e-17 Homeobox KN domain
Homeodomain PF00046 278 - 310 4e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 684, 988
AccI GTMKAC 2 cut(s) 1064, 1077
AciI CCGC 3 cut(s) 386, 392, 944
AclWI GGATC 6 cut(s) 112, 468, 662, 730, 978, 1002
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 2 cut(s) 381, 618
AfaI GTAC 3 cut(s) 500, 604, 716
AfiI CCNNNNNNNGG 3 cut(s) 457, 684, 988
AhlI ACTAGT 1 cut(s) 182
AjiI CACGTC 1 cut(s) 1062
AjnI CCWGG 1 cut(s) 741
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AluBI AGCT 8 cut(s) 110, 457, 511, 565, 572, 698, 703, 856
AluI AGCT 8 cut(s) 110, 457, 511, 565, 572, 698, 703, 856
Alw26I GTCTC 2 cut(s) 35, 740
AlwI GGATC 6 cut(s) 112, 468, 662, 730, 978, 1002
Ama87I CYCGRG 1 cut(s) 789
AoxI GGCC 5 cut(s) 321, 393, 474, 541, 830
ApeKI GCWGC 8 cut(s) 161, 164, 167, 170, 389, 413, 425, 866
ApoI RAATTY 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 831, 1024
AsuC2I CCSGG 2 cut(s) 790, 791
AsuHPI GGTGA 3 cut(s) 576, 620, 1038
AsuNHI GCTAGC 1 cut(s) 856
AvaI CYCGRG 1 cut(s) 789
AvaII GGWCC 1 cut(s) 1024
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 8 cut(s) 148, 151, 154, 157, 376, 400, 437, 878
BccI CCATC 9 cut(s) 9, 46, 58, 94, 207, 595, 847, 1035, 1051
BciT130I CCWGG 1 cut(s) 743
BcnI CCSGG 2 cut(s) 790, 791
BcoDI GTCTC 2 cut(s) 35, 740
BcuI ACTAGT 1 cut(s) 182
BfaI CTAG 7 cut(s) 21, 183, 192, 372, 600, 857, 863
BfmI CTRYAG 4 cut(s) 85, 171, 423, 873
BlpI GCTNAGC 1 cut(s) 699
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 3 cut(s) 743, 790, 791
Bme18I GGWCC 1 cut(s) 1024
BmeT110I CYCGRG 1 cut(s) 789
BmgBI CACGTC 1 cut(s) 1062
BmgT120I GGNCC 2 cut(s) 831, 1024
BmiI GGNNCC 3 cut(s) 27, 354, 846
BmrFI CCNGG 3 cut(s) 743, 790, 791
BmsI GCATC 4 cut(s) 123, 373, 477, 878
BmtI GCTAGC 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 286, 318
Bpu1102I GCTNAGC 1 cut(s) 699
BpuMI CCSGG 2 cut(s) 790, 791
BsaJI CCNNGG 2 cut(s) 780, 789
BsaXI ACNNNNNCTCC 2 cut(s) 1051, 1081
Bsc4I CCNNNNNNNGG 3 cut(s) 457, 684, 988
Bse1I ACTGG 2 cut(s) 610, 908
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 2 cut(s) 780, 789
BseGI GGATG 5 cut(s) 69, 132, 298, 388, 997
BseLI CCNNNNNNNGG 3 cut(s) 457, 684, 988
BseMII CTCAG 1 cut(s) 751
BseNI ACTGG 2 cut(s) 610, 908
BseRI GAGGAG 2 cut(s) 129, 132
BseXI GCAGC 8 cut(s) 148, 151, 154, 157, 376, 400, 437, 878
BseYI CCCAGC 2 cut(s) 110, 561
BshFI GGCC 5 cut(s) 323, 395, 476, 543, 832
BsiHKCI CYCGRG 1 cut(s) 789
BsiSI CCGG 1 cut(s) 790
BslI CCNNNNNNNGG 3 cut(s) 457, 684, 988
BsmAI GTCTC 2 cut(s) 35, 740
BsnI GGCC 5 cut(s) 323, 395, 476, 543, 832
BsoBI CYCGRG 1 cut(s) 789
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
Bsp1720I GCTNAGC 1 cut(s) 699
BspACI CCGC 3 cut(s) 386, 392, 944
BspANI GGCC 5 cut(s) 323, 395, 476, 543, 832
BspCNI CTCAG 1 cut(s) 750
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 3 cut(s) 27, 354, 846
BspMAI CTGCAG 2 cut(s) 175, 427
BspOI GCTAGC 1 cut(s) 860
BspPI GGATC 6 cut(s) 112, 468, 662, 730, 978, 1002
BspQI GCTCTTC 2 cut(s) 501, 637
BsrI ACTGG 2 cut(s) 610, 908
BssECI CCNNGG 2 cut(s) 780, 789
BssMI GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 3 cut(s) 719, 886, 939
Bst6I CTCTTC 4 cut(s) 311, 501, 633, 637
BstC8I GCNNGC 1 cut(s) 858
BstDEI CTNAG 3 cut(s) 285, 699, 737
BstF5I GGATG 5 cut(s) 69, 132, 298, 388, 997
BstKTI GATC 8 cut(s) 107, 178, 463, 613, 670, 725, 973, 997
BstMAI GTCTC 2 cut(s) 35, 740
BstMBI GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
BstMWI GCNNNNNNNGC 7 cut(s) 167, 170, 392, 422, 738, 853, 866
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 3 cut(s) 741, 788, 789
BstSFI CTRYAG 4 cut(s) 85, 171, 423, 873
BstV1I GCAGC 8 cut(s) 148, 151, 154, 157, 376, 400, 437, 878
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 2 cut(s) 667, 722
BstYI RGATCY 2 cut(s) 667, 722
BsuRI GGCC 5 cut(s) 323, 395, 476, 543, 832
BtrI CACGTC 1 cut(s) 1062
BtsCI GGATG 5 cut(s) 69, 132, 298, 388, 997
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 858
CciI TCATGA 1 cut(s) 291
Cfr13I GGNCC 2 cut(s) 831, 1024
Cfr9I CCCGGG 1 cut(s) 789
Csp6I GTAC 3 cut(s) 499, 603, 715
CspCI CAANNNNNGTGG 2 cut(s) 791, 826
CviAII CATG 8 cut(s) 92, 292, 429, 469, 503, 527, 535, 828
CviQI GTAC 3 cut(s) 499, 603, 715
DdeI CTNAG 3 cut(s) 285, 699, 737
DpnI GATC 8 cut(s) 106, 177, 462, 612, 669, 724, 972, 996
DpnII GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
Eam1104I CTCTTC 4 cut(s) 311, 501, 633, 637
EarI CTCTTC 4 cut(s) 311, 501, 633, 637
Eco130I CCWWGG 1 cut(s) 780
Eco147I AGGCCT 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 1024
Eco57I CTGAAG 2 cut(s) 381, 618
Eco88I CYCGRG 1 cut(s) 789
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 741
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 8 cut(s) 95, 295, 432, 472, 506, 530, 538, 831
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FatI CATG 8 cut(s) 91, 291, 428, 468, 502, 526, 534, 827
FauNDI CATATG 1 cut(s) 1034
FblI GTMKAC 2 cut(s) 1064, 1077
FokI GGATG 5 cut(s) 76, 139, 285, 395, 984
FriOI GRGCYC 1 cut(s) 355
FspBI CTAG 7 cut(s) 21, 183, 192, 372, 600, 857, 863
GsaI CCCAGC 2 cut(s) 114, 565
HaeIII GGCC 5 cut(s) 323, 395, 476, 543, 832
HapII CCGG 1 cut(s) 790
Hin1II CATG 8 cut(s) 95, 295, 432, 472, 506, 530, 538, 831
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 2 cut(s) 295, 437
HpaII CCGG 1 cut(s) 790
HphI GGTGA 3 cut(s) 576, 620, 1038
Hpy166II GTNNAC 2 cut(s) 1065, 1078
Hpy188I TCNGA 6 cut(s) 30, 180, 442, 637, 844, 882
Hpy188III TCNNGA 2 cut(s) 260, 292
Hpy8I GTNNAC 2 cut(s) 1065, 1078
HpyAV CCTTC 2 cut(s) 532, 988
HpyCH4III ACNGT 3 cut(s) 719, 886, 939
HpyCH4IV ACGT 1 cut(s) 1061
HpyCH4V TGCA 7 cut(s) 173, 425, 663, 709, 802, 955, 1059
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 170, 392, 422, 738, 853, 866
HpyF3I CTNAG 3 cut(s) 285, 699, 737
HpySE526I ACGT 1 cut(s) 1061
Hsp92II CATG 8 cut(s) 95, 295, 432, 472, 506, 530, 538, 831
Kzo9I GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
LguI GCTCTTC 2 cut(s) 501, 637
LmnI GCTCC 3 cut(s) 358, 813, 844
Lsp1109I GCAGC 8 cut(s) 148, 151, 154, 157, 376, 400, 437, 878
LweI GCATC 4 cut(s) 123, 373, 477, 878
MaeI CTAG 7 cut(s) 21, 183, 192, 372, 600, 857, 863
MaeII ACGT 1 cut(s) 1061
MaeIII GTNAC 1 cut(s) 194
MalI GATC 8 cut(s) 106, 177, 462, 612, 669, 724, 972, 996
MboI GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
MfeI CAATTG 1 cut(s) 334
MflI RGATCY 2 cut(s) 667, 722
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 7 cut(s) 76, 151, 334, 658, 820, 1004, 1015
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 598
MseI TTAA 2 cut(s) 237, 749
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 790
MspR9I CCNGG 3 cut(s) 743, 790, 791
MunI CAATTG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 7 cut(s) 167, 170, 392, 422, 738, 853, 866
NciI CCSGG 2 cut(s) 790, 791
NdeI CATATG 1 cut(s) 1034
NdeII GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
NheI GCTAGC 1 cut(s) 856
NlaIII CATG 8 cut(s) 95, 295, 432, 472, 506, 530, 538, 831
NlaIV GGNNCC 3 cut(s) 27, 354, 846
NspI RCATGY 1 cut(s) 432
PagI TCATGA 1 cut(s) 291
PceI AGGCCT 1 cut(s) 476
PciSI GCTCTTC 2 cut(s) 501, 637
PfeI GAWTC 1 cut(s) 437
PflMI CCANNNNNTGG 2 cut(s) 684, 988
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 741
PspFI CCCAGC 2 cut(s) 110, 561
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 3 cut(s) 27, 354, 846
PspPI GGNCC 2 cut(s) 831, 1024
PstI CTGCAG 2 cut(s) 175, 427
PsuI RGATCY 2 cut(s) 667, 722
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 500, 604, 716
RsaNI GTAC 3 cut(s) 499, 603, 715
SalI GTCGAC 1 cut(s) 1076
SapI GCTCTTC 2 cut(s) 501, 637
SaqAI TTAA 2 cut(s) 237, 749
Sau3AI GATC 8 cut(s) 104, 175, 460, 610, 667, 722, 970, 994
Sau96I GGNCC 2 cut(s) 831, 1024
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 3 cut(s) 743, 790, 791
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 4 cut(s) 123, 373, 477, 878
SfcI CTRYAG 4 cut(s) 85, 171, 423, 873
SinI GGWCC 1 cut(s) 1024
SmaI CCCGGG 1 cut(s) 791
SpeI ACTAGT 1 cut(s) 182
Sse9I AATT 7 cut(s) 76, 151, 334, 658, 820, 1004, 1015
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 3 cut(s) 386, 392, 944
SspMI CTAG 7 cut(s) 21, 183, 192, 372, 600, 857, 863
StuI AGGCCT 1 cut(s) 476
StyD4I CCNGG 3 cut(s) 741, 788, 789
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 3 cut(s) 719, 886, 939
TaiI ACGT 1 cut(s) 1064
TaqI TCGA 1 cut(s) 1077
TasI AATT 7 cut(s) 76, 151, 334, 658, 820, 1004, 1015
TatI WGTACW 1 cut(s) 602
TauI GCSGC 2 cut(s) 389, 395
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 2 cut(s) 237, 749
Tru9I TTAA 2 cut(s) 237, 749
TscAI CASTG 1 cut(s) 212
TseI GCWGC 8 cut(s) 161, 164, 167, 170, 389, 413, 425, 866
TspDTI ATGAA 6 cut(s) 293, 457, 519, 543, 669, 898
TspGWI ACGGA 2 cut(s) 568, 783
TspMI CCCGGG 1 cut(s) 789
TspRI CASTG 1 cut(s) 212
Van91I CCANNNNNTGG 2 cut(s) 684, 988
VpaK11BI GGWCC 1 cut(s) 1024
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 432
XmaI CCCGGG 1 cut(s) 789
XmiI GTMKAC 2 cut(s) 1064, 1077
XspI CTAG 7 cut(s) 21, 183, 192, 372, 600, 857, 863
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.