Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Reverse (-)

8723554 .. 8726679

Gene Structure 3126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1102600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAGGAGGAATCAGTCGTAATAGTGGCAATTTAGGGTTTCTGGATTCTTCTTTAGCCGCTGCCCTAATGAATTCAGAAACCAGAACTACTAGTAGCAGCAGTTATAGTAAGCAGTTTCTTTCCCTACCTTTGATCAACAATATTCCCAACTTACAAAGCCATCCGCATGAGACTATTGATCAGGAGATGAGCGTGAAAGCTAAGATTATGGCTCATCCTCTCTACCCTCAACTCTTGTCTGCCTATGTCAATTGCTTAAAGGTTGGGGCACCTGCTGAAGTGGTGGCTAGGTTAGAGCAGGTCTGTAGTGCTAATAATTCTGAGGCAGCAAAGAGGAGTAGCATAAGAGGAGGAGATAATCATCCAGACGCTGCGCTGGACCAGTTCATGGAGGCGTATTGCGAGATGCTGACCAAGTACGAGGAAGAGCTCACAGAACCCTTCAAAGAAGCCATGCTTTTCCTCTCCAACATTGACACCCAGCTCAAAGCTCTTACTCTTCACTCTAATTCCTCTTCAGATTCTGCTATTGTTAGTAGTAGTGATTTTGTTGGGCAAAGTGGGTCTCCAAAAGAGGCTAATGCCATCAAGGAATGTTCCATGGATCCTCAAGCTGAAGATAGAGAACTCAAAGTTCAACTTTTGCGCAAATACAGTGGATATATGGGCACTCTCAAGCAGGAATTTATGAAGAAGAAAAAGAATGGAAAGTTGCCAGAGGAAGCCCGGCATCAGTTGCTGGATTGGTGGTGCAGACATTATAAGTGGCCTTATCCATCGGAGGCTCAGAAGCTAGCATTGGCAGAATCTACAGGTCTGGATCTTAAACAGATAAATAACTGGTTCATCAATCAAAGGAAACGCCATTGGAAGCCTACGGAGGACATGCAGTTTGTTTTGATGGATCCAACTCTTCATCACCATCATCATCCCCACTTCTATATGGACAATGCAATCTGCAATCCCTTCTCCATGGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

329

Amino Acids

37.11

Weight (kDa)

6.16

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	66 - 106	2e-21	KNOX1 domain
KNOX2	PF03791	123 - 167	2.2e-19	KNOX2 domain
ELK	PF03789	210 - 231	2.3e-09	ELK domain
Homeobox_KN	PF05920	250 - 289	1.8e-18	Homeobox KN domain
Homeodomain	PF00046	258 - 290	5.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AarI	CACCTGC	1 cut(s)	283
Acc16I	TGCGCA	1 cut(s)	650
Acc36I	ACCTGC	2 cut(s)	283, 292
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	2 cut(s)	60, 167
AclWI	GGATC	5 cut(s)	602, 615, 831, 902, 915
AcsI	RAATTY	2 cut(s)	73, 686
AcuI	CTGAAG	3 cut(s)	300, 504, 639
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	2 cut(s)	448, 641
AhlI	ACTAGT	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AluBI	AGCT	6 cut(s)	203, 433, 487, 494, 617, 796
AluI	AGCT	6 cut(s)	203, 433, 487, 494, 617, 796
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	2 cut(s)	167, 573
AlwI	GGATC	5 cut(s)	602, 615, 831, 902, 915
AlwNI	CAGNNNCTG	3 cut(s)	374, 527, 742
AoxI	GGCC	1 cut(s)	770
ApeKI	GCWGC	4 cut(s)	62, 99, 329, 374
ApoI	RAATTY	2 cut(s)	73, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspLEI	GCGC	2 cut(s)	379, 651
AspS9I	GGNCC	1 cut(s)	382
AsuC2I	CCSGG	1 cut(s)	730
AsuHPI	GGTGA	1 cut(s)	914
AsuNHI	GCTAGC	1 cut(s)	796
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	2 cut(s)	274, 674
BamHI	GGATCC	2 cut(s)	607, 907
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	4 cut(s)	49, 111, 341, 361
BccI	CCATC	5 cut(s)	171, 596, 787, 898, 933
BclI	TGATCA	2 cut(s)	135, 181
BcnI	CCSGG	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	167, 573
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	3 cut(s)	93, 291, 797
BfmI	CTRYAG	2 cut(s)	307, 813
BfuAI	ACCTGC	2 cut(s)	283, 292
BisI	GCNGC	5 cut(s)	60, 63, 100, 330, 375
BlsI	GCNGC	5 cut(s)	61, 64, 101, 331, 376
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	3 cut(s)	273, 609, 909
BmrFI	CCNGG	1 cut(s)	730
BmsI	GCATC	2 cut(s)	399, 742
BmtI	GCTAGC	1 cut(s)	800
BpuEI	CTTGAG	2 cut(s)	597, 662
BpuMI	CCSGG	1 cut(s)	730
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	603, 975
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	385, 848
Bse8I	GATNNNNATC	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	603, 975
BseGI	GGATG	4 cut(s)	163, 217, 364, 931
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMII	CTCAG	2 cut(s)	315, 803
BseNI	ACTGG	2 cut(s)	385, 848
BseRI	GAGGAG	3 cut(s)	352, 366, 369
BseSI	GKGCMC	2 cut(s)	274, 674
BseXI	GCAGC	4 cut(s)	49, 111, 341, 361
BseYI	CCCAGC	1 cut(s)	483
BsgI	GTGCAG	1 cut(s)	775
BshFI	GGCC	1 cut(s)	772
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	167, 573
BsnI	GGCC	1 cut(s)	772
Bso31I	GGTCTC	1 cut(s)	573
Bsp1286I	GDGCHC	3 cut(s)	274, 435, 674
Bsp143I	GATC	5 cut(s)	135, 181, 607, 823, 907
Bsp19I	CCATGG	2 cut(s)	603, 975
BspACI	CCGC	2 cut(s)	60, 167
BspANI	GGCC	1 cut(s)	772
BspCNI	CTCAG	2 cut(s)	316, 802
BspLI	GGNNCC	3 cut(s)	273, 609, 909
BspMI	ACCTGC	2 cut(s)	283, 292
BspOI	GCTAGC	1 cut(s)	800
BspPI	GGATC	5 cut(s)	602, 615, 831, 902, 915
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	385, 848
BssECI	CCNNGG	2 cut(s)	603, 975
BssMI	GATC	5 cut(s)	135, 181, 607, 823, 907
BssT1I	CCWWGG	2 cut(s)	603, 975
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	4 cut(s)	423, 507, 523, 921
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	3 cut(s)	204, 324, 789
BstDSI	CCRYGG	2 cut(s)	603, 975
BstF5I	GGATG	4 cut(s)	163, 217, 364, 931
BstHHI	GCGC	2 cut(s)	379, 651
BstKTI	GATC	5 cut(s)	138, 184, 610, 826, 910
BstMAI	GTCTC	2 cut(s)	167, 573
BstMBI	GATC	5 cut(s)	135, 181, 607, 823, 907
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstNSI	RCATGY	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	728
BstSFI	CTRYAG	2 cut(s)	307, 813
BstSLI	GKGCMC	2 cut(s)	274, 674
BstV1I	GCAGC	4 cut(s)	49, 111, 341, 361
BstX2I	RGATCY	3 cut(s)	607, 823, 907
BstYI	RGATCY	3 cut(s)	607, 823, 907
BsuRI	GGCC	1 cut(s)	772
BtgI	CCRYGG	2 cut(s)	603, 975
BtsCI	GGATG	4 cut(s)	163, 217, 364, 931
BtsIMutI	CAGTG	1 cut(s)	664
BveI	ACCTGC	2 cut(s)	283, 292
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	3 cut(s)	374, 527, 742
CfoI	GCGC	2 cut(s)	379, 651
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	421
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	6 cut(s)	170, 391, 457, 604, 889, 976
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	204, 324, 789
DpnI	GATC	5 cut(s)	137, 183, 609, 825, 909
DpnII	GATC	5 cut(s)	135, 181, 607, 823, 907
Eam1104I	CTCTTC	4 cut(s)	423, 507, 523, 921
EarI	CTCTTC	4 cut(s)	423, 507, 523, 921
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	2 cut(s)	603, 975
Eco24I	GRGCYC	1 cut(s)	435
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	382
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	3 cut(s)	300, 504, 639
EcoICRI	GAGCTC	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	603, 975
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	2 cut(s)	603, 975
FaeI	CATG	6 cut(s)	173, 394, 460, 607, 892, 979
FalI	AAGNNNNNCTT	4 cut(s)	444, 476, 627, 659
FatI	CATG	6 cut(s)	169, 390, 456, 603, 888, 975
FbaI	TGATCA	2 cut(s)	135, 181
Fnu4HI	GCNGC	5 cut(s)	60, 63, 100, 330, 375
FokI	GGATG	4 cut(s)	150, 204, 351, 918
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	5 cut(s)	60, 63, 100, 330, 375
FspBI	CTAG	3 cut(s)	93, 291, 797
FspI	TGCGCA	1 cut(s)	650
GlaI	GCGC	2 cut(s)	378, 650
GluI	GCNGC	5 cut(s)	60, 63, 100, 330, 375
GsaI	CCCAGC	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	772
HapII	CCGG	1 cut(s)	730
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	379, 651
Hin1II	CATG	6 cut(s)	173, 394, 460, 607, 892, 979
Hin6I	GCGC	2 cut(s)	377, 649
HinP1I	GCGC	2 cut(s)	377, 649
HinfI	GANTC	4 cut(s)	12, 47, 524, 809
HpaII	CCGG	1 cut(s)	730
HphI	GGTGA	1 cut(s)	914
Hpy188I	TCNGA	5 cut(s)	79, 325, 523, 784, 792
Hpy188III	TCNNGA	4 cut(s)	44, 185, 368, 821
HpyAV	CCTTC	2 cut(s)	454, 979
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4V	TGCA	4 cut(s)	756, 892, 956, 963
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
HpyF3I	CTNAG	3 cut(s)	204, 324, 789
Hsp92II	CATG	6 cut(s)	173, 394, 460, 607, 892, 979
HspAI	GCGC	2 cut(s)	377, 649
Ksp22I	TGATCA	2 cut(s)	135, 181
Kzo9I	GATC	5 cut(s)	135, 181, 607, 823, 907
LguI	GCTCTTC	1 cut(s)	423
Lsp1109I	GCAGC	4 cut(s)	49, 111, 341, 361
LweI	GCATC	2 cut(s)	399, 742
MaeI	CTAG	3 cut(s)	93, 291, 797
MalI	GATC	5 cut(s)	137, 183, 609, 825, 909
MboI	GATC	5 cut(s)	135, 181, 607, 823, 907
MboII	GAAGA	8 cut(s)	42, 440, 494, 510, 632, 706, 709, 908
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	3 cut(s)	607, 823, 907
MhlI	GDGCHC	3 cut(s)	274, 435, 674
MluCI	AATT	6 cut(s)	31, 73, 253, 319, 511, 686
MmeI	TCCRAC	2 cut(s)	495, 935
MseI	TTAA	3 cut(s)	260, 828, 985
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	730
MspR9I	CCNGG	1 cut(s)	730
MunI	CAATTG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	739
NciI	CCSGG	1 cut(s)	730
NcoI	CCATGG	2 cut(s)	603, 975
NdeII	GATC	5 cut(s)	135, 181, 607, 823, 907
NheI	GCTAGC	1 cut(s)	796
NlaIII	CATG	6 cut(s)	173, 394, 460, 607, 892, 979
NlaIV	GGNNCC	3 cut(s)	273, 609, 909
NsbI	TGCGCA	1 cut(s)	650
NspI	RCATGY	1 cut(s)	892
PaqCI	CACCTGC	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	12, 47, 524, 809
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	61, 64, 101, 331, 376
PsiI	TTATAA	1 cut(s)	765
Psp124BI	GAGCTC	1 cut(s)	435
PspFI	CCCAGC	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	273, 609, 909
PspPI	GGNCC	1 cut(s)	382
PstNI	CAGNNNCTG	3 cut(s)	374, 527, 742
PsuI	RGATCY	3 cut(s)	607, 823, 907
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	168
SacI	GAGCTC	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	260, 828, 985
SatI	GCNGC	5 cut(s)	60, 63, 100, 330, 375
Sau3AI	GATC	5 cut(s)	135, 181, 607, 823, 907
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	3 cut(s)	274, 435, 674
SfaNI	GCATC	2 cut(s)	399, 742
SfcI	CTRYAG	2 cut(s)	307, 813
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	612, 677
SmoI	CTYRAG	2 cut(s)	612, 677
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	6 cut(s)	31, 73, 253, 319, 511, 686
SsiI	CCGC	2 cut(s)	60, 167
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	3 cut(s)	93, 291, 797
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	2 cut(s)	603, 975
TaaI	ACNGT	1 cut(s)	659
TasI	AATT	6 cut(s)	31, 73, 253, 319, 511, 686
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	12, 47, 524, 809
Tru1I	TTAA	3 cut(s)	260, 828, 985
Tru9I	TTAA	3 cut(s)	260, 828, 985
TscAI	CASTG	1 cut(s)	664
TseI	GCWGC	4 cut(s)	62, 99, 329, 374
TspDTI	ATGAA	5 cut(s)	86, 379, 707, 838, 908
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	73, 686
XceI	RCATGY	1 cut(s)	892
XspI	CTAG	3 cut(s)	93, 291, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.