RLG00000021086

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002529
Physical Location & Seq
Forward (+)
71821238 .. 71824069
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021086

Sequence Viewer

Length: 1047 bp
ATGGAGAGTGAGAGATGGTTTAGGGTTTCTAAAGTGAGAGAGATAGAGAAGATGGAGGGTGGGAGCAATAATTGTAATAGTAAGTATTACAGTCATGGTGTGACGGGATCTGGGTCTTCTTCTGGGATGTTGATGCCTCCTCCTCTTGTGAATTCTTATGCTACTGCTGCAGATCAAACTAGTAGTTCTAGTAACCATCAGCACTACTTTGTTTCTCTTCCTTTTACCAACATCAACCCAAACCAAAATGATAGTCAGGATAATGAGATGAGTATGAAAGCTAAGATCATGGGTCATCCTCTCTTTCCTCGCCTCGTGGCCTCTTATGTCAATTGTCAAAAGGTTGGGGCACCAGCTGAAGTGGTGGCTAGGTTAGAGCATGCGGCTGCGGCCTCAATATCTTATGCGGCTGCAATTTCTGAAGCATGTGAAGAATCAGAACCAGACCCAGAGCTGGATCAGTTCATGGAGGCCTATTGTGAGATGCTTGCTAAGTACCATGAAGAGCTCACAAAGCCCTTCCATGAAGCCATGCTTGGCCTCTCTAAAATCAACTCCCAGCTCAAAGCTCTATCCGTTTCACCATCATATTCTGCTAGTACTGGTGATCTTGTTAGACAAAGTGGATCTTTAGGAGAGGCTGATGTGAATGAGAGTGGCATAGATCCAAGAGCCGAAGATTGGGATATTAAAGCTAAGCTTCTGCAAAAATATGGTGGATGTCTTGGCAGTCTCAGCCAGGAGTTGAAGCAGAAGAAAAAAAACGGAAAGTTGCCCAAGGAAGCCCGGGTTCAATTGCAAGAATGGTGGAGCAGAAATTACACATGGCCCTATCCATCGGAGCCTCAAAAGCTAGGACTAGCAGCATCTACAGGTCTGACTGTGAAGCAGATAAACAACTGGTTCATAAACCAAAGGAAACGCCATTGGAAGCCGTCTTCAGAGGGTATGCAACTTGCTATGGTGGATCATCCCCAATTCTACTATATGGACCATCTCATCTGCAATCCTTTACCTATGGATTGCACATCTACTCCTTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

349

Amino Acids

38.78

Weight (kDa)

6.08

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 92 - 131 7.8e-19 KNOX1 domain
KNOX2 PF03791 148 - 191 4.2e-20 KNOX2 domain
Homeobox_KN PF05920 269 - 308 1.7e-17 Homeobox KN domain
Homeodomain PF00046 277 - 309 6.2e-06 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AciI CCGC 3 cut(s) 383, 389, 407
AclWI GGATC 5 cut(s) 115, 465, 634, 659, 975
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 3 cut(s) 378, 441, 924
AfaI GTAC 2 cut(s) 497, 601
AfiI CCNNNNNNNGG 2 cut(s) 454, 681
AgsI TTSAA 2 cut(s) 748, 794
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 738
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
AluBI AGCT 9 cut(s) 281, 356, 454, 508, 562, 569, 695, 700, 853
AluI AGCT 9 cut(s) 281, 356, 454, 508, 562, 569, 695, 700, 853
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 737
AlwI GGATC 5 cut(s) 115, 465, 634, 659, 975
Ama87I CYCGRG 1 cut(s) 786
AoxI GGCC 5 cut(s) 318, 390, 471, 538, 827
ApeKI GCWGC 4 cut(s) 167, 386, 410, 863
ApoI RAATTY 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AspS9I GGNCC 2 cut(s) 828, 991
AsuC2I CCSGG 2 cut(s) 787, 788
AsuHPI GGTGA 2 cut(s) 573, 617
AvaI CYCGRG 1 cut(s) 786
AvaII GGWCC 1 cut(s) 991
BaeGI GKGCMC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 510
BauI CACGAG 1 cut(s) 314
BbsI GAAGAC 2 cut(s) 108, 930
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 4 cut(s) 154, 373, 397, 875
BccI CCATC 6 cut(s) 9, 46, 204, 592, 844, 1002
BceAI ACGGC 1 cut(s) 919
BciT130I CCWGG 1 cut(s) 740
BcnI CCSGG 2 cut(s) 787, 788
BcoDI GTCTC 1 cut(s) 737
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 6 cut(s) 180, 189, 369, 597, 854, 860
BfmI CTRYAG 2 cut(s) 168, 870
BisI GCNGC 7 cut(s) 168, 384, 387, 390, 408, 411, 864
BlpI GCTNAGC 1 cut(s) 696
BlsI GCNGC 7 cut(s) 169, 385, 388, 391, 409, 412, 865
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 3 cut(s) 740, 787, 788
Bme18I GGWCC 1 cut(s) 991
BmeT110I CYCGRG 1 cut(s) 786
BmgT120I GGNCC 2 cut(s) 828, 991
BmiI GGNNCC 2 cut(s) 351, 843
BmrFI CCNGG 3 cut(s) 740, 787, 788
BmsI GCATC 3 cut(s) 123, 474, 875
BpiI GAAGAC 2 cut(s) 108, 930
Bpu1102I GCTNAGC 1 cut(s) 696
BpuMI CCSGG 2 cut(s) 787, 788
BsaJI CCNNGG 2 cut(s) 777, 786
BsaXI ACNNNNNCTCC 1 cut(s) 1018
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 681
Bse1I ACTGG 2 cut(s) 607, 905
BseBI CCWGG 1 cut(s) 740
BseDI CCNNGG 2 cut(s) 777, 786
BseGI GGATG 4 cut(s) 132, 295, 725, 970
BseLI CCNNNNNNNGG 2 cut(s) 454, 681
BseMII CTCAG 1 cut(s) 748
BseNI ACTGG 2 cut(s) 607, 905
BseRI GAGGAG 2 cut(s) 129, 132
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 4 cut(s) 154, 373, 397, 875
BseYI CCCAGC 1 cut(s) 558
BshFI GGCC 5 cut(s) 320, 392, 473, 540, 829
BshNI GGYRCC 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 786
BsiSI CCGG 1 cut(s) 787
BslI CCNNNNNNNGG 2 cut(s) 454, 681
BsmAI GTCTC 1 cut(s) 737
BsnI GGCC 5 cut(s) 320, 392, 473, 540, 829
BsoBI CYCGRG 1 cut(s) 786
Bsp1286I GDGCHC 2 cut(s) 352, 510
Bsp143I GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
Bsp1720I GCTNAGC 1 cut(s) 696
BspACI CCGC 3 cut(s) 383, 389, 407
BspANI GGCC 5 cut(s) 320, 392, 473, 540, 829
BspCNI CTCAG 1 cut(s) 747
BspLI GGNNCC 2 cut(s) 351, 843
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 5 cut(s) 115, 465, 634, 659, 975
BspQI GCTCTTC 1 cut(s) 498
BspT107I GGYRCC 1 cut(s) 349
BsrI ACTGG 2 cut(s) 607, 905
BssECI CCNNGG 2 cut(s) 777, 786
BssMI GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
BssSI CACGAG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 777
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 1 cut(s) 740
Bst4CI ACNGT 2 cut(s) 92, 883
Bst6I CTCTTC 2 cut(s) 222, 498
BstC8I GCNNGC 2 cut(s) 381, 489
BstDEI CTNAG 4 cut(s) 282, 492, 696, 734
BstF5I GGATG 4 cut(s) 132, 295, 725, 970
BstKTI GATC 8 cut(s) 110, 175, 288, 460, 610, 629, 667, 970
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
BstMWI GCNNNNNNNGC 5 cut(s) 167, 389, 514, 735, 850
BstNI CCWGG 1 cut(s) 740
BstNSI RCATGY 2 cut(s) 383, 429
BstSCI CCNGG 3 cut(s) 738, 785, 786
BstSFI CTRYAG 2 cut(s) 168, 870
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 4 cut(s) 154, 373, 397, 875
BstV2I GAAGAC 2 cut(s) 108, 930
BstX2I RGATCY 3 cut(s) 107, 626, 664
BstYI RGATCY 3 cut(s) 107, 626, 664
BsuRI GGCC 5 cut(s) 320, 392, 473, 540, 829
BtsCI GGATG 4 cut(s) 132, 295, 725, 970
Cac8I GCNNGC 2 cut(s) 381, 489
Cfr13I GGNCC 2 cut(s) 828, 991
Cfr9I CCCGGG 1 cut(s) 786
Csp6I GTAC 2 cut(s) 496, 600
CspCI CAANNNNNGTGG 2 cut(s) 788, 823
CviAII CATG 9 cut(s) 95, 289, 380, 426, 466, 500, 524, 532, 825
CviQI GTAC 2 cut(s) 496, 600
DdeI CTNAG 4 cut(s) 282, 492, 696, 734
DpnI GATC 8 cut(s) 109, 174, 287, 459, 609, 628, 666, 969
DpnII GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
Eam1104I CTCTTC 2 cut(s) 222, 498
EarI CTCTTC 2 cut(s) 222, 498
Ecl136II GAGCTC 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 777
Eco147I AGGCCT 1 cut(s) 473
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 991
Eco53kI GAGCTC 1 cut(s) 508
Eco57I CTGAAG 3 cut(s) 378, 441, 924
Eco88I CYCGRG 1 cut(s) 786
EcoICRI GAGCTC 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 777
EcoT38I GRGCYC 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 9 cut(s) 98, 292, 383, 429, 469, 503, 527, 535, 828
FalI AAGNNNNNCTT 6 cut(s) 519, 551, 613, 645, 684, 716
FatI CATG 9 cut(s) 94, 288, 379, 425, 465, 499, 523, 531, 824
Fnu4HI GCNGC 7 cut(s) 168, 384, 387, 390, 408, 411, 864
FokI GGATG 4 cut(s) 139, 282, 732, 957
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 7 cut(s) 168, 384, 387, 390, 408, 411, 864
FspBI CTAG 6 cut(s) 180, 189, 369, 597, 854, 860
GluI GCNGC 7 cut(s) 168, 384, 387, 390, 408, 411, 864
GsaI CCCAGC 1 cut(s) 562
HaeIII GGCC 5 cut(s) 320, 392, 473, 540, 829
HapII CCGG 1 cut(s) 787
Hin1II CATG 9 cut(s) 98, 292, 383, 429, 469, 503, 527, 535, 828
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 1 cut(s) 434
HpaII CCGG 1 cut(s) 787
HphI GGTGA 2 cut(s) 573, 617
Hpy188I TCNGA 5 cut(s) 421, 439, 841, 879, 943
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 2 cut(s) 92, 883
HpyCH4V TGCA 7 cut(s) 170, 413, 706, 799, 952, 1005, 1026
HpyF10VI GCNNNNNNNGC 5 cut(s) 167, 389, 514, 735, 850
HpyF3I CTNAG 4 cut(s) 282, 492, 696, 734
Hsp92II CATG 9 cut(s) 98, 292, 383, 429, 469, 503, 527, 535, 828
Kzo9I GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 3 cut(s) 63, 810, 841
Lsp1109I GCAGC 4 cut(s) 154, 373, 397, 875
LweI GCATC 3 cut(s) 123, 474, 875
MaeI CTAG 6 cut(s) 180, 189, 369, 597, 854, 860
MaeIII GTNAC 2 cut(s) 100, 191
MalI GATC 8 cut(s) 109, 174, 287, 459, 609, 628, 666, 969
MboI GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
MboII GAAGA 9 cut(s) 61, 108, 111, 209, 443, 515, 689, 766, 930
MfeI CAATTG 2 cut(s) 331, 794
MflI RGATCY 3 cut(s) 107, 626, 664
MhlI GDGCHC 2 cut(s) 352, 510
MluCI AATT 7 cut(s) 70, 151, 331, 414, 794, 817, 977
MseI TTAA 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 787
MspR9I CCNGG 3 cut(s) 740, 787, 788
MunI CAATTG 2 cut(s) 331, 794
MvaI CCWGG 1 cut(s) 740
MwoI GCNNNNNNNGC 5 cut(s) 167, 389, 514, 735, 850
NciI CCSGG 2 cut(s) 787, 788
NdeII GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
NlaIII CATG 9 cut(s) 98, 292, 383, 429, 469, 503, 527, 535, 828
NlaIV GGNNCC 2 cut(s) 351, 843
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 2 cut(s) 383, 429
PaeI GCATGC 1 cut(s) 383
PceI AGGCCT 1 cut(s) 473
PciSI GCTCTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 7 cut(s) 169, 385, 388, 391, 409, 412, 865
Psp124BI GAGCTC 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 738
PspFI CCCAGC 1 cut(s) 558
PspGI CCWGG 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 351, 843
PspPI GGNCC 2 cut(s) 828, 991
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 3 cut(s) 107, 626, 664
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 2 cut(s) 497, 601
RsaNI GTAC 2 cut(s) 496, 600
SacI GAGCTC 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 1 cut(s) 690
SatI GCNGC 7 cut(s) 168, 384, 387, 390, 408, 411, 864
Sau3AI GATC 8 cut(s) 107, 172, 285, 457, 607, 626, 664, 967
Sau96I GGNCC 2 cut(s) 828, 991
ScaI AGTACT 1 cut(s) 601
ScrFI CCNGG 3 cut(s) 740, 787, 788
SduI GDGCHC 2 cut(s) 352, 510
SfaNI GCATC 3 cut(s) 123, 474, 875
SfcI CTRYAG 2 cut(s) 168, 870
SinI GGWCC 1 cut(s) 991
SmaI CCCGGG 1 cut(s) 788
SpeI ACTAGT 1 cut(s) 179
SphI GCATGC 1 cut(s) 383
Sse9I AATT 7 cut(s) 70, 151, 331, 414, 794, 817, 977
SseBI AGGCCT 1 cut(s) 473
SsiI CCGC 3 cut(s) 383, 389, 407
SspMI CTAG 6 cut(s) 180, 189, 369, 597, 854, 860
SstI GAGCTC 1 cut(s) 510
StuI AGGCCT 1 cut(s) 473
StyD4I CCNGG 3 cut(s) 738, 785, 786
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 2 cut(s) 92, 883
TasI AATT 7 cut(s) 70, 151, 331, 414, 794, 817, 977
TatI WGTACW 1 cut(s) 599
TauI GCSGC 3 cut(s) 386, 392, 410
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 1 cut(s) 690
Tru9I TTAA 1 cut(s) 690
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 4 cut(s) 167, 386, 410, 863
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 5 cut(s) 290, 454, 516, 540, 895
TspGWI ACGGA 2 cut(s) 565, 780
TspMI CCCGGG 1 cut(s) 786
VpaK11BI GGWCC 1 cut(s) 991
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 383, 429
XmaI CCCGGG 1 cut(s) 786
XspI CTAG 6 cut(s) 180, 189, 369, 597, 854, 860
ZrmI AGTACT 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.