Rorug02G0468500

homeobox protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
59933035 .. 59935049
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0468500.1

Sequence Viewer

Length: 1572 bp
ATGAGGCAATGGGGTTGGCTTCTTGGGACACTAACAATGCTGCTGGTTCTGGTTTTTCTCTTGGTTGGTTATGGATTTGACACCAGCACCCCAGCAAAAAGATCATTGCGGAGTGATTCTGGTCGACATTATGGGGTGAAGATGGGTGTGACAGTTCCATTTAATGTGGACAAAAGGTACATATTGCAGCGTGATCATTCTGGGTTCTATGCATATGCCATTTTTGAGCGCTTAGAAGGGTGGCCCAAAGTGGTGATTTATCAAATAAGAATGGTCTTCAAGCTTCAACAAGCCAAGTTCCGGTACATGGCGCTGTCGGACACTAGACAAAGGTTCATGCCAACAGCCTATGAACGTGGATATTATGGTATGAAACTCGCCTATAAAGAAGCTGTTCTCCTAAACAATACAGGAGAGGTAGATGACAAGTATCAGTACTCAATTGAGGACAGGGATAACAAGGTGCATGGTTGGATTTGTACCGATGACGAATCATATGTTGGGTTTTGGATGATCACACCAAGTGATGAGTTCCACATGGTCGGTCCATTCAAGCAGGGTCTCACTTCCCACGTTGGTCCCACTACCCTCTCAGTGTTTGTTAGTACCCATTACGCTGGGAATGTTGGGATGACCTTCCAAGAAGGTGAGGCATGGAAAAAGGTTTTCGGTCCCGTTTTTGTCTATCTTAATTTTGCTCCGCTGGGATCAAATAATTCCACGAGTATTCTCTGGAACAACGCTAAACAACAAATGTTCAAAGAAGTCAAGAGTTGGCCATACAATTTCACTCAGTCTCAAGACTTTCCTTCTTCTGATCAAAGGGGTTCATTGTCCGACCGATTACTACTTATGTGGGACTTGCTCCGCCTGGAGAAGTGGGATCATGGCAAAGGGAAAGCAAGGGATACCAATTCTGGACTCAAGCTGACAAAAAATACTGATATTACAATTGAACCAGGAAGCAAAATCCAAGTGCCTGTTTTTATCTACAACCCTCCAAGAAATGGTCCTACTTTATGGGAAATTGGCATCCCTGATCGCACTGCCTCCGAGTTCGACATACCCGATCCATATCCAACTCTCACCAATAAATTGTGCATTTTCTCAGAAAGGTTTCGGCAATATGGATTGTGGGCACGTTATGAAGATCGATACCCTGACTCTGATCTCATCTACAAAGTTGGTGCTAACAATTACAGTGAAGATTGGTTTTACGATCAAGTGACCAGGAATATAGGAAATGAAACCTATTTTGAACTTGACAATATGACTCATCCCGGAAATTTTACACTCCAATTGGCATTGGCCGCAGCCAGTTATTCAAAATTGCATGTTCGGTTTAACAACTGGAACGCCAAGCGACCACATTTTTCAACAGGTAGATTAGGTGTGGACAATGCTATAGCAAGACATGGTATTCATGGTTTGTACTCGTTGTTCAGTGTAAGTGTACCAAGTTCTCTGTTGCATGAAGGAACAAACACAATCCATCTAACACAGCCAAACGGTGGATCACCTTTCCAAGGAATCATGTATGACTACATAAGACTAGAAGGACCTTCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

60.13

Weight (kDa)

8.47

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 46 - 138 3.6e-34 Rhamnogalacturonate lyase family
CBM-like PF14683 339 - 518 1.1e-42 Polysaccharide lyase family 4, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1570
AccB7I CCANNNNNTGG 2 cut(s) 1007, 1511
AccI GTMKAC 1 cut(s) 124
AciI CCGC 4 cut(s) 109, 701, 868, 1311
AclWI GGATC 4 cut(s) 715, 891, 1064, 1522
AcoI YGGCCR 2 cut(s) 776, 1308
AcsI RAATTY 1 cut(s) 1285
AdeI CACNNNGTG 1 cut(s) 524
AfaI GTAC 7 cut(s) 179, 305, 437, 481, 607, 1433, 1455
AfeI AGCGCT 1 cut(s) 230
AfiI CCNNNNNNNGG 5 cut(s) 300, 307, 1007, 1511, 1526
AgsI TTSAA 8 cut(s) 280, 287, 553, 760, 956, 1259, 1326, 1377
AjnI CCWGG 3 cut(s) 870, 958, 1229
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 3 cut(s) 283, 392, 928
AluI AGCT 3 cut(s) 283, 392, 928
Alw26I GTCTC 2 cut(s) 566, 801
AlwI GGATC 4 cut(s) 715, 891, 1064, 1522
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 3 cut(s) 242, 776, 1308
ApeKI GCWGC 3 cut(s) 40, 187, 1313
ApoI RAATTY 1 cut(s) 1285
Asp700I GAANNNNTTC 2 cut(s) 393, 1116
AspLEI GCGC 2 cut(s) 231, 313
AspS9I GGNCC 6 cut(s) 243, 545, 578, 671, 1010, 1559
AsuC2I CCSGG 1 cut(s) 1281
AsuHPI GGTGA 5 cut(s) 148, 265, 659, 1078, 1509
AvaII GGWCC 5 cut(s) 545, 578, 671, 1010, 1559
BaeGI GKGCMC 1 cut(s) 1141
BalI TGGCCA 1 cut(s) 778
BauI CACGAG 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 27, 199, 1325
BccI CCATC 2 cut(s) 136, 1500
BciT130I CCWGG 3 cut(s) 872, 960, 1231
BciVI GTATCC 1 cut(s) 901
BclI TGATCA 3 cut(s) 193, 513, 817
BcnI CCSGG 1 cut(s) 1281
BcoDI GTCTC 2 cut(s) 566, 801
BfaI CTAG 2 cut(s) 324, 1553
BfmI CTRYAG 1 cut(s) 1404
BfoI RGCGCY 2 cut(s) 232, 314
BfuI GTATCC 1 cut(s) 901
BisI GCNGC 4 cut(s) 41, 188, 1311, 1314
BlsI GCNGC 4 cut(s) 42, 189, 1312, 1315
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 4 cut(s) 872, 960, 1231, 1281
Bme18I GGWCC 5 cut(s) 545, 578, 671, 1010, 1559
BmgT120I GGNCC 6 cut(s) 243, 545, 578, 671, 1010, 1559
BmiI GGNNCC 2 cut(s) 580, 673
BmrFI CCNGG 4 cut(s) 872, 960, 1231, 1281
BmsI GCATC 1 cut(s) 1041
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 893
BpuEI CTTGAG 2 cut(s) 783, 908
BpuMI CCSGG 1 cut(s) 1281
Bsa29I ATCGAT 1 cut(s) 1153
BsaBI GATNNNNATC 1 cut(s) 1074
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 1525
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 5 cut(s) 300, 307, 1007, 1511, 1526
Bse1I ACTGG 2 cut(s) 1317, 1355
Bse3DI GCAATG 2 cut(s) 14, 104
Bse8I GATNNNNATC 1 cut(s) 1074
BseBI CCWGG 3 cut(s) 872, 960, 1231
BseCI ATCGAT 1 cut(s) 1153
BseDI CCNNGG 1 cut(s) 1525
BseGI GGATG 4 cut(s) 516, 636, 1032, 1276
BseJI GATNNNNATC 1 cut(s) 1074
BseLI CCNNNNNNNGG 5 cut(s) 300, 307, 1007, 1511, 1526
BseMI GCAATG 2 cut(s) 14, 104
BseMII CTCAG 3 cut(s) 606, 806, 1122
BseNI ACTGG 2 cut(s) 1317, 1355
BseSI GKGCMC 1 cut(s) 1141
BseXI GCAGC 3 cut(s) 27, 199, 1325
BseYI CCCAGC 3 cut(s) 91, 617, 703
Bsh1285I CGRYCG 1 cut(s) 841
BshFI GGCC 3 cut(s) 244, 778, 1310
BshVI ATCGAT 1 cut(s) 1153
BsiEI CGRYCG 1 cut(s) 841
BsiSI CCGG 2 cut(s) 301, 1281
BslFI GGGAC 4 cut(s) 40, 564, 657, 872
BslI CCNNNNNNNGG 5 cut(s) 300, 307, 1007, 1511, 1526
BsmAI GTCTC 2 cut(s) 566, 801
BsmFI GGGAC 4 cut(s) 40, 564, 657, 872
BsnI GGCC 3 cut(s) 244, 778, 1310
Bso31I GGTCTC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 1141
BspACI CCGC 4 cut(s) 109, 701, 868, 1311
BspANI GGCC 3 cut(s) 244, 778, 1310
BspCNI CTCAG 3 cut(s) 605, 805, 1121
BspDI ATCGAT 1 cut(s) 1153
BspLI GGNNCC 2 cut(s) 580, 673
BspPI GGATC 4 cut(s) 715, 891, 1064, 1522
BspTNI GGTCTC 1 cut(s) 566
BsrDI GCAATG 2 cut(s) 14, 104
BsrI ACTGG 2 cut(s) 1317, 1355
BssECI CCNNGG 1 cut(s) 1525
BssSI CACGAG 1 cut(s) 721
BssT1I CCWWGG 1 cut(s) 1525
Bst2BI CACGAG 1 cut(s) 721
Bst2UI CCWGG 3 cut(s) 872, 960, 1231
Bst4CI ACNGT 3 cut(s) 154, 1202, 1511
BstDEI CTNAG 4 cut(s) 232, 592, 792, 1108
BstENI CCTNNNNNAGG 1 cut(s) 1524
BstF5I GGATG 4 cut(s) 516, 636, 1032, 1276
BstH2I RGCGCY 2 cut(s) 232, 314
BstHHI GCGC 2 cut(s) 231, 313
BstMAI GTCTC 2 cut(s) 566, 801
BstMCI CGRYCG 1 cut(s) 841
BstMWI GCNNNNNNNGC 1 cut(s) 1310
BstNI CCWGG 3 cut(s) 872, 960, 1231
BstNSI RCATGY 1 cut(s) 1337
BstSCI CCNGG 4 cut(s) 870, 958, 1229, 1279
BstSFI CTRYAG 1 cut(s) 1404
BstSLI GKGCMC 1 cut(s) 1141
BstV1I GCAGC 3 cut(s) 27, 199, 1325
BstV2I GAAGAC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 617
Bsu15I ATCGAT 1 cut(s) 1153
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 3 cut(s) 244, 778, 1310
BsuTUI ATCGAT 1 cut(s) 1153
BtsCI GGATG 4 cut(s) 516, 636, 1032, 1276
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 4 cut(s) 600, 1044, 1207, 1450
CfoI GCGC 2 cut(s) 231, 313
Cfr13I GGNCC 6 cut(s) 243, 545, 578, 671, 1010, 1559
ClaI ATCGAT 1 cut(s) 1153
Csp6I GTAC 7 cut(s) 178, 304, 436, 480, 606, 1432, 1454
CviQI GTAC 7 cut(s) 178, 304, 436, 480, 606, 1432, 1454
DdeI CTNAG 4 cut(s) 232, 592, 792, 1108
DraIII CACNNNGTG 1 cut(s) 524
EaeI YGGCCR 2 cut(s) 776, 1308
EciI GGCGGA 1 cut(s) 857
Eco130I CCWWGG 1 cut(s) 1525
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 5 cut(s) 545, 578, 671, 1010, 1559
Eco47III AGCGCT 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 1524
EcoO109I RGGNCCY 1 cut(s) 1559
EcoRII CCWGG 3 cut(s) 870, 958, 1229
EcoT14I CCWWGG 1 cut(s) 1525
EcoT22I ATGCAT 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 1525
FaqI GGGAC 4 cut(s) 40, 564, 657, 872
FauNDI CATATG 2 cut(s) 214, 496
FbaI TGATCA 3 cut(s) 193, 513, 817
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 41, 188, 1311, 1314
FokI GGATG 4 cut(s) 523, 643, 1019, 1263
Fsp4HI GCNGC 4 cut(s) 41, 188, 1311, 1314
FspBI CTAG 2 cut(s) 324, 1553
GlaI GCGC 2 cut(s) 230, 312
GluI GCNGC 4 cut(s) 41, 188, 1311, 1314
GsaI CCCAGC 3 cut(s) 95, 621, 707
GsuI CTGGAG 1 cut(s) 893
HaeII RGCGCY 2 cut(s) 232, 314
HaeIII GGCC 3 cut(s) 244, 778, 1310
HapII CCGG 2 cut(s) 301, 1281
HhaI GCGC 2 cut(s) 231, 313
Hin6I GCGC 2 cut(s) 229, 311
HinP1I GCGC 2 cut(s) 229, 311
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 6 cut(s) 116, 491, 921, 1163, 1273, 1530
HpaII CCGG 2 cut(s) 301, 1281
HphI GGTGA 5 cut(s) 148, 265, 659, 1078, 1509
Hpy166II GTNNAC 4 cut(s) 125, 169, 1396, 1454
Hpy188I TCNGA 6 cut(s) 319, 817, 838, 1054, 1111, 1168
Hpy188III TCNNGA 4 cut(s) 733, 769, 800, 918
Hpy8I GTNNAC 4 cut(s) 125, 169, 1396, 1454
HpyAV CCTTC 7 cut(s) 230, 638, 646, 819, 1469, 1550, 1572
HpyCH4III ACNGT 3 cut(s) 154, 1202, 1511
HpyCH4IV ACGT 3 cut(s) 355, 573, 1141
HpyCH4V TGCA 6 cut(s) 187, 212, 466, 1101, 1333, 1471
HpyF10VI GCNNNNNNNGC 1 cut(s) 1310
HpyF3I CTNAG 4 cut(s) 232, 592, 792, 1108
HpySE526I ACGT 3 cut(s) 355, 573, 1141
HspAI GCGC 2 cut(s) 229, 311
Ksp22I TGATCA 3 cut(s) 193, 513, 817
LmnI GCTCC 2 cut(s) 703, 870
Lsp1109I GCAGC 3 cut(s) 27, 199, 1325
LweI GCATC 1 cut(s) 1041
MaeI CTAG 2 cut(s) 324, 1553
MaeII ACGT 3 cut(s) 355, 573, 1141
MaeIII GTNAC 2 cut(s) 148, 1225
MboII GAAGA 5 cut(s) 151, 268, 804, 1160, 1217
MfeI CAATTG 3 cut(s) 441, 951, 1298
MhlI GDGCHC 1 cut(s) 1141
MlsI TGGCCA 1 cut(s) 778
MluNI TGGCCA 1 cut(s) 778
MlyI GAGTC 3 cut(s) 915, 1157, 1267
MmeI TCCRAC 4 cut(s) 297, 452, 861, 1103
MnlI CCTC 6 cut(s) 409, 439, 599, 643, 1008, 1060
Mox20I TGGCCA 1 cut(s) 778
Mph1103I ATGCAT 1 cut(s) 214
MroXI GAANNNNTTC 2 cut(s) 393, 1116
MscI TGGCCA 1 cut(s) 778
MseI TTAA 3 cut(s) 162, 690, 1344
Msp20I TGGCCA 1 cut(s) 778
MspA1I CMGCKG 1 cut(s) 703
MspI CCGG 2 cut(s) 301, 1281
MspR9I CCNGG 4 cut(s) 872, 960, 1231, 1281
MunI CAATTG 3 cut(s) 441, 951, 1298
MvaI CCWGG 3 cut(s) 872, 960, 1231
MwoI GCNNNNNNNGC 1 cut(s) 1310
NciI CCSGG 1 cut(s) 1281
NdeI CATATG 2 cut(s) 214, 496
NlaIV GGNNCC 2 cut(s) 580, 673
NmuCI GTSAC 2 cut(s) 148, 1225
NsiI ATGCAT 1 cut(s) 214
NspI RCATGY 1 cut(s) 1337
PcsI WCGNNNNNNNCGW 1 cut(s) 1065
PdmI GAANNNNTTC 2 cut(s) 393, 1116
PfeI GAWTC 3 cut(s) 116, 491, 1530
PflMI CCANNNNNTGG 2 cut(s) 1007, 1511
PfoI TCCNGGA 1 cut(s) 1279
PkrI GCNGC 4 cut(s) 42, 189, 1312, 1315
PleI GAGTC 3 cut(s) 915, 1157, 1267
PpsI GAGTC 3 cut(s) 915, 1157, 1267
PpuMI RGGWCCY 1 cut(s) 1559
PsiI TTATAA 1 cut(s) 1570
Psp5II RGGWCCY 1 cut(s) 1559
Psp6I CCWGG 3 cut(s) 870, 958, 1229
PspFI CCCAGC 3 cut(s) 91, 617, 703
PspGI CCWGG 3 cut(s) 870, 958, 1229
PspN4I GGNNCC 2 cut(s) 580, 673
PspPI GGNCC 6 cut(s) 243, 545, 578, 671, 1010, 1559
PspPPI RGGWCCY 1 cut(s) 1559
PsrI GAACNNNNNNTAC 2 cut(s) 1424, 1456
RsaI GTAC 7 cut(s) 179, 305, 437, 481, 607, 1433, 1455
RsaNI GTAC 7 cut(s) 178, 304, 436, 480, 606, 1432, 1454
SalI GTCGAC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 162, 690, 1344
SatI GCNGC 4 cut(s) 41, 188, 1311, 1314
Sau96I GGNCC 6 cut(s) 243, 545, 578, 671, 1010, 1559
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 3 cut(s) 915, 1157, 1267
ScrFI CCNGG 4 cut(s) 872, 960, 1231, 1281
SduI GDGCHC 1 cut(s) 1141
SfaNI GCATC 1 cut(s) 1041
SfcI CTRYAG 1 cut(s) 1404
SinI GGWCC 5 cut(s) 545, 578, 671, 1010, 1559
SmlI CTYRAG 2 cut(s) 798, 923
SmoI CTYRAG 2 cut(s) 798, 923
SsiI CCGC 4 cut(s) 109, 701, 868, 1311
SspMI CTAG 2 cut(s) 324, 1553
StyD4I CCNGG 4 cut(s) 870, 958, 1229, 1279
StyI CCWWGG 1 cut(s) 1525
TaaI ACNGT 3 cut(s) 154, 1202, 1511
TaiI ACGT 3 cut(s) 358, 576, 1144
TaqI TCGA 3 cut(s) 124, 1059, 1153
TaqII GACCGA 3 cut(s) 533, 659, 855
TatI WGTACW 2 cut(s) 435, 1431
TauI GCSGC 1 cut(s) 1313
TfiI GAWTC 3 cut(s) 116, 491, 1530
Tru1I TTAA 3 cut(s) 162, 690, 1344
Tru9I TTAA 3 cut(s) 162, 690, 1344
TscAI CASTG 4 cut(s) 600, 1051, 1207, 1450
TseFI GTSAC 2 cut(s) 148, 1225
TseI GCWGC 3 cut(s) 40, 187, 1313
Tsp45I GTSAC 2 cut(s) 148, 1225
TspDTI ATGAA 9 cut(s) 325, 366, 386, 819, 1161, 1260, 1412, 1488, 1554
TspRI CASTG 4 cut(s) 600, 1051, 1207, 1450
Van91I CCANNNNNTGG 2 cut(s) 1007, 1511
VpaK11BI GGWCC 5 cut(s) 545, 578, 671, 1010, 1559
XagI CCTNNNNNAGG 1 cut(s) 1524
XapI RAATTY 1 cut(s) 1285
XceI RCATGY 1 cut(s) 1337
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 2 cut(s) 393, 1116
XspI CTAG 2 cut(s) 324, 1553
ZrmI AGTACT 1 cut(s) 437
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.