Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Reverse (-)

28527510 .. 28531939

Gene Structure 4430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAAGGTGTTGGTGCCAATGGCACCTGTAGTATGATGGCCTTTGGAGAAAACAGCAGTAATGGAGGAGGAATGTGTCCAATGATGATGATGCCTCTAATGACTTCCTCACATCATGCTCATCACTCTCATCATCACCTTCATCAACATCATATGAATCTTAATCCTAATGCAGACACACATAATACTAGTACGACTCATCAGTTTCCCCAGCTTCCCCAGCTGCCTCCGTCCAACAACCATCACGACCACCAAAATCCCCATAACACTAGCGGCGGCTCCTCCTTCCTTCTCCACAACCCAGTTGCAGCTGCGGCCTCCTATTTCATGGACAACAACAACAATGATGGTGTTGGCGGTAGCTCTTCTTCTTCGCCTTCAACTGTCAAGGCTAAGATCATGGCTCATCCTCACTATCACCGCCTCTTGGCCTCCTATATCAACTGTCAAAAGGTTGGAGCGCCGCCTGAAGTGGTGGCGAGACTGGAAGAAGCGTGCGCATCGGCGGCGACTATAGGTCAAATGGTAAGTAGTAGCAGTGAATCAGGATCTCTCGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCCTACTGCGAGATGCTTACCAAGTATGAGCAAGAAATCTCTAAACCCTTCAAGGAAGCCATGATCTTCATCCAAAGAATCGAGTCCCAATTCAAAGCGCTCACTCTTTCTTCTTCTGATTCTGCAGGTTATGGCGATGGAATTGATAGGAACAATGTATCATCTGAGGAAGAGGTTGATGTTAATAACAACTTCATAGATCCCCAAGCTGAAGACAGGGAGCTTAAAGGGCAGCTATTGCGCAAGTACAGTGGATATTTGGGTAGTTTGAAGCAGGAGTTCATGAAGAAAAGGAAGAAAGGGAAGCTGCCTAAAGAAGCCAGGCAACAGTTGCTAGATTGGTGGAGTCGACATTACAAATGGCCTTATCCATCGGAATCACAGAAACTAGCTCTTGCAGAATCAACGGGGCTGGACCAGAAGCAGATAAACAACTGGTTCATCAACCAAAGGAAGCGACATTGGAAGCCGTCAGAGGATATGCAGTTTGTGGTGATGGATGCTAGCCACCAAGGCCACTATTACATGGACAGTGTCATGGGAAATCCATTTCCCATGGATATCTCTCCCACATTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005911 GO:0006355 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009506 GO:0009690 GO:0009691 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0009987 GO:0010468 GO:0010496 GO:0010497 GO:0010556 GO:0010817 GO:0015630 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022603 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042446 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046483 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048509 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

390

Amino Acids

43.45

Weight (kDa)

6.23

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	499, 830
Acc36I	ACCTGC	1 cut(s)	704
AccB1I	GGYRCC	2 cut(s)	14, 23
AccI	GTMKAC	1 cut(s)	937
AciI	CCGC	7 cut(s)	273, 276, 314, 357, 421, 464, 506
AclWI	GGATC	4 cut(s)	556, 557, 582, 782
AcuI	CTGAAG	2 cut(s)	489, 819
AfaI	GTAC	2 cut(s)	193, 836
AfeI	AGCGCT	1 cut(s)	687
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	4 cut(s)	381, 640, 682, 859
AhdI	GACNNNNNGTC	1 cut(s)	516
AhlI	ACTAGT	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	908
Alw26I	GTCTC	1 cut(s)	475
AlwI	GGATC	4 cut(s)	556, 557, 582, 782
Aor51HI	AGCGCT	1 cut(s)	687
AoxI	GGCC	6 cut(s)	39, 315, 429, 588, 950, 1102
ApeKI	GCWGC	5 cut(s)	223, 308, 311, 820, 895
AspLEI	GCGC	4 cut(s)	463, 500, 688, 831
AspS9I	GGNCC	1 cut(s)	1003
AsuHPI	GGTGA	4 cut(s)	128, 410, 569, 1093
AsuNHI	GCTAGC	1 cut(s)	1091
AvaII	GGWCC	1 cut(s)	1003
BanI	GGYRCC	2 cut(s)	14, 23
BarI	GAAGNNNNNNTAC	2 cut(s)	352, 384
BbsI	GAAGAC	1 cut(s)	807
BbvI	GCAGC	5 cut(s)	210, 298, 320, 832, 882
BccI	CCATC	6 cut(s)	31, 249, 341, 719, 967, 1078
BceAI	ACGGC	1 cut(s)	1042
BciT130I	CCWGG	1 cut(s)	910
BcoDI	GTCTC	1 cut(s)	475
BcuI	ACTAGT	1 cut(s)	188
BfaI	CTAG	5 cut(s)	189, 270, 923, 977, 1092
BfmI	CTRYAG	3 cut(s)	28, 513, 711
BfoI	RGCGCY	2 cut(s)	464, 689
BfuAI	ACCTGC	1 cut(s)	704
BglI	GCCNNNNNGGC	1 cut(s)	1101
Bme1390I	CCNGG	1 cut(s)	910
Bme18I	GGWCC	1 cut(s)	1003
BmeRI	GACNNNNNGTC	1 cut(s)	516
BmgT120I	GGNCC	1 cut(s)	1003
BmiI	GGNNCC	3 cut(s)	16, 25, 280
BmrFI	CCNGG	1 cut(s)	910
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	4 cut(s)	81, 509, 591, 1078
BmtI	GCTAGC	1 cut(s)	1095
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	1099, 1143
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	3 cut(s)	302, 489, 1028
Bse3DI	GCAATG	1 cut(s)	1160
Bse8I	GATNNNNATC	1 cut(s)	656
BseBI	CCWGG	1 cut(s)	910
BseDI	CCNNGG	2 cut(s)	1099, 1143
BseGI	GGATG	3 cut(s)	406, 657, 1093
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMI	GCAATG	1 cut(s)	1160
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	3 cut(s)	302, 489, 1028
BseRI	GAGGAG	2 cut(s)	81, 271
BseXI	GCAGC	5 cut(s)	210, 298, 320, 832, 882
BseYI	CCCAGC	2 cut(s)	210, 219
BshFI	GGCC	6 cut(s)	41, 317, 431, 590, 952, 1104
BshNI	GGYRCC	2 cut(s)	14, 23
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	658
BsnI	GGCC	6 cut(s)	41, 317, 431, 590, 952, 1104
Bsp143I	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
Bsp19I	CCATGG	1 cut(s)	1143
BspACI	CCGC	7 cut(s)	273, 276, 314, 357, 421, 464, 506
BspANI	GGCC	6 cut(s)	41, 317, 431, 590, 952, 1104
BspCNI	CTCAG	1 cut(s)	745
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	3 cut(s)	16, 25, 280
BspMAI	CTGCAG	1 cut(s)	715
BspMI	ACCTGC	1 cut(s)	704
BspOI	GCTAGC	1 cut(s)	1095
BspPI	GGATC	4 cut(s)	556, 557, 582, 782
BspQI	GCTCTTC	1 cut(s)	370
BspT107I	GGYRCC	2 cut(s)	14, 23
BsrDI	GCAATG	1 cut(s)	1160
BsrI	ACTGG	3 cut(s)	302, 489, 1028
BssECI	CCNNGG	2 cut(s)	1099, 1143
BssMI	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
BssT1I	CCWWGG	2 cut(s)	1099, 1143
Bst2UI	CCWGG	1 cut(s)	910
Bst4CI	ACNGT	5 cut(s)	385, 446, 839, 918, 1121
Bst6I	CTCTTC	2 cut(s)	370, 753
BstAPI	GCANNNNNTGC	2 cut(s)	826, 919
BstC8I	GCNNGC	2 cut(s)	496, 1093
BstDEI	CTNAG	2 cut(s)	393, 753
BstDSI	CCRYGG	1 cut(s)	1143
BstF5I	GGATG	3 cut(s)	406, 657, 1093
BstH2I	RGCGCY	2 cut(s)	464, 689
BstHHI	GCGC	4 cut(s)	463, 500, 688, 831
BstKTI	GATC	6 cut(s)	399, 551, 565, 577, 654, 790
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
BstMWI	GCNNNNNNNGC	7 cut(s)	220, 314, 506, 817, 826, 919, 1101
BstNI	CCWGG	1 cut(s)	910
BstSCI	CCNGG	1 cut(s)	908
BstSFI	CTRYAG	3 cut(s)	28, 513, 711
BstV1I	GCAGC	5 cut(s)	210, 298, 320, 832, 882
BstV2I	GAAGAC	1 cut(s)	807
BstX2I	RGATCY	3 cut(s)	548, 562, 787
BstYI	RGATCY	3 cut(s)	548, 562, 787
BsuRI	GGCC	6 cut(s)	41, 317, 431, 590, 952, 1104
BtgI	CCRYGG	1 cut(s)	1143
BtgZI	GCGATG	1 cut(s)	738
BtsCI	GGATG	3 cut(s)	406, 657, 1093
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	544, 844, 1126
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	2 cut(s)	496, 1093
CciI	TCATGA	1 cut(s)	870
CfoI	GCGC	4 cut(s)	463, 500, 688, 831
Cfr13I	GGNCC	1 cut(s)	1003
Csp6I	GTAC	2 cut(s)	192, 835
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviAII	CATG	9 cut(s)	116, 328, 400, 583, 649, 871, 1114, 1126, 1144
CviQI	GTAC	2 cut(s)	192, 835
DdeI	CTNAG	2 cut(s)	393, 753
DpnI	GATC	6 cut(s)	398, 550, 564, 576, 653, 789
DpnII	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
DriI	GACNNNNNGTC	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	370, 753
Eam1105I	GACNNNNNGTC	1 cut(s)	516
EarI	CTCTTC	2 cut(s)	370, 753
Eco130I	CCWWGG	2 cut(s)	1099, 1143
Eco147I	AGGCCT	1 cut(s)	590
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	1 cut(s)	1003
Eco47III	AGCGCT	1 cut(s)	687
Eco57I	CTGAAG	2 cut(s)	489, 819
EcoRII	CCWGG	1 cut(s)	908
EcoRV	GATATC	1 cut(s)	1150
EcoT14I	CCWWGG	2 cut(s)	1099, 1143
ErhI	CCWWGG	2 cut(s)	1099, 1143
FaeI	CATG	9 cut(s)	119, 331, 403, 586, 652, 874, 1117, 1129, 1147
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	9 cut(s)	115, 327, 399, 582, 648, 870, 1113, 1125, 1143
FauNDI	CATATG	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	937
FokI	GGATG	3 cut(s)	393, 644, 1100
FspAI	RTGCGCAY	1 cut(s)	499
FspBI	CTAG	5 cut(s)	189, 270, 923, 977, 1092
FspI	TGCGCA	2 cut(s)	499, 830
GlaI	GCGC	4 cut(s)	462, 499, 687, 830
GsaI	CCCAGC	2 cut(s)	214, 223
HaeII	RGCGCY	2 cut(s)	464, 689
HaeIII	GGCC	6 cut(s)	41, 317, 431, 590, 952, 1104
HhaI	GCGC	4 cut(s)	463, 500, 688, 831
Hin1II	CATG	9 cut(s)	119, 331, 403, 586, 652, 874, 1117, 1129, 1147
Hin6I	GCGC	4 cut(s)	461, 498, 686, 829
HinP1I	GCGC	4 cut(s)	461, 498, 686, 829
HincII	GTYRAC	1 cut(s)	938
HindII	GTYRAC	1 cut(s)	938
HinfI	GANTC	9 cut(s)	157, 196, 542, 666, 671, 707, 934, 965, 989
HphI	GGTGA	4 cut(s)	128, 410, 569, 1093
Hpy166II	GTNNAC	1 cut(s)	938
Hpy188I	TCNGA	5 cut(s)	706, 754, 964, 1063, 1169
Hpy188III	TCNNGA	4 cut(s)	245, 546, 572, 871
Hpy8I	GTNNAC	1 cut(s)	938
HpyAV	CCTTC	5 cut(s)	149, 295, 299, 387, 646
HpyCH4III	ACNGT	5 cut(s)	385, 446, 839, 918, 1121
HpyCH4V	TGCA	5 cut(s)	173, 308, 713, 986, 1072
HpyF10VI	GCNNNNNNNGC	7 cut(s)	220, 314, 506, 817, 826, 919, 1101
HpyF3I	CTNAG	2 cut(s)	393, 753
Hsp92II	CATG	9 cut(s)	119, 331, 403, 586, 652, 874, 1117, 1129, 1147
HspAI	GCGC	4 cut(s)	461, 498, 686, 829
Kzo9I	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	3 cut(s)	284, 458, 808
Lsp1109I	GCAGC	5 cut(s)	210, 298, 320, 832, 882
LweI	GCATC	4 cut(s)	81, 509, 591, 1078
MaeI	CTAG	5 cut(s)	189, 270, 923, 977, 1092
MalI	GATC	6 cut(s)	398, 550, 564, 576, 653, 789
MboI	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
MflI	RGATCY	3 cut(s)	548, 562, 787
MluCI	AATT	2 cut(s)	677, 729
MlyI	GAGTC	3 cut(s)	190, 680, 943
MmeI	TCCRAC	2 cut(s)	258, 436
MseI	TTAA	3 cut(s)	162, 771, 813
MspA1I	CMGCKG	2 cut(s)	223, 311
MspR9I	CCNGG	1 cut(s)	910
MvaI	CCWGG	1 cut(s)	910
MwoI	GCNNNNNNNGC	7 cut(s)	220, 314, 506, 817, 826, 919, 1101
NcoI	CCATGG	1 cut(s)	1143
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
NheI	GCTAGC	1 cut(s)	1091
NlaIII	CATG	9 cut(s)	119, 331, 403, 586, 652, 874, 1117, 1129, 1147
NlaIV	GGNNCC	3 cut(s)	16, 25, 280
NsbI	TGCGCA	2 cut(s)	499, 830
PagI	TCATGA	1 cut(s)	870
PceI	AGGCCT	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	370
PfeI	GAWTC	6 cut(s)	157, 542, 666, 707, 965, 989
PflFI	GACNNNGTC	1 cut(s)	1121
PleI	GAGTC	3 cut(s)	190, 679, 942
PpsI	GAGTC	3 cut(s)	190, 679, 942
Psp6I	CCWGG	1 cut(s)	908
PspFI	CCCAGC	2 cut(s)	210, 219
PspGI	CCWGG	1 cut(s)	908
PspN4I	GGNNCC	3 cut(s)	16, 25, 280
PspPI	GGNCC	1 cut(s)	1003
PstI	CTGCAG	1 cut(s)	715
PsuI	RGATCY	3 cut(s)	548, 562, 787
PsyI	GACNNNGTC	1 cut(s)	1121
PvuII	CAGCTG	2 cut(s)	223, 311
RsaI	GTAC	2 cut(s)	193, 836
RsaNI	GTAC	2 cut(s)	192, 835
SalI	GTCGAC	1 cut(s)	936
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	162, 771, 813
Sau3AI	GATC	6 cut(s)	396, 548, 562, 574, 651, 787
Sau96I	GGNCC	1 cut(s)	1003
SchI	GAGTC	3 cut(s)	190, 680, 943
ScrFI	CCNGG	1 cut(s)	910
SfaNI	GCATC	4 cut(s)	81, 509, 591, 1078
SfcI	CTRYAG	3 cut(s)	28, 513, 711
SinI	GGWCC	1 cut(s)	1003
SpeI	ACTAGT	1 cut(s)	188
Sse9I	AATT	2 cut(s)	677, 729
SseBI	AGGCCT	1 cut(s)	590
SsiI	CCGC	7 cut(s)	273, 276, 314, 357, 421, 464, 506
SspMI	CTAG	5 cut(s)	189, 270, 923, 977, 1092
StuI	AGGCCT	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	908
StyI	CCWWGG	2 cut(s)	1099, 1143
TaaI	ACNGT	5 cut(s)	385, 446, 839, 918, 1121
TaqI	TCGA	2 cut(s)	669, 937
TasI	AATT	2 cut(s)	677, 729
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	5 cut(s)	276, 279, 317, 466, 509
TfiI	GAWTC	6 cut(s)	157, 542, 666, 707, 965, 989
Tru1I	TTAA	3 cut(s)	162, 771, 813
Tru9I	TTAA	3 cut(s)	162, 771, 813
TscAI	CASTG	3 cut(s)	544, 844, 1126
TseI	GCWGC	5 cut(s)	223, 308, 311, 820, 895
TspDTI	ATGAA	9 cut(s)	131, 170, 316, 571, 646, 772, 859, 887, 1018
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	3 cut(s)	544, 844, 1126
Tth111I	GACNNNGTC	1 cut(s)	1121
VpaK11BI	GGWCC	1 cut(s)	1003
XmiI	GTMKAC	1 cut(s)	937
XspI	CTAG	5 cut(s)	189, 270, 923, 977, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.