Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Forward (+)

711986 .. 717617

Gene Structure 5632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G015200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCAGACCCAAACACCACTACTCCGTTTCAGCTTCCCCAGCTACCTCCATCCAACCACAACCGCAATAGCAGCACCTCCTCTTTCATTTTCAACGGACCACCACCCCAACAACAACAACAACAACCACCCTGCAGCAGCTGCCGCCTGTTATTTCATGGACAACAACAACAGCAACCATGATGGCAGCAGCTCTTCCTCTTCTTCTGTCAAGGCCAAGATCATGGCACACCCTCACTATCACCGTCTCTTGGCCTCCTATATCAACTGTCAAAAGGTTGGGGCACCGCCTGAAGTGGTGGCAAGACTGGAAGAAGCGTGCGCGTCAGCAGCGTCAATAGGTCAAATGATGAGTAGCAGCAGCGGATCAGGGTGTCTCGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCCTACTGCGAGATGCTCACCAAGTATGAGCAAGAGCTTTCCAAACCCTTTAAGGAAGCCATGATCTTCCTGCAGAGGATTGAGTCCCAATTCAAAGCCCTCACTCTTTCTTCTTCTTCCGATTCTGCAGTTTGTGGCGATGGACTCGATAGGAACGGATCATCTGAGGAAGAAGTTGATGTTAATAACAACTTCATAGATCCACAAGCAGAAGATAGGGAGCTAAAAGGTCAGCTGTTGCGCAAGTACAGTGGATATCTGGGCAGTTTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTGCCTAAAGAAGCCAGGCAACAGTTGCTGGATTGGTGGAGCAGACACTACAAATGGCCTTATCCATCGGAGTCGCAGAAGCTGGCTCTTGCAGAATCGACAGGGCTGGACCAGAAGCAAATAAACAATTGGTTCATCAACCAAAGGAAGAGGCATTGGAAGCCTTCAGAGGATATGCAGTTTGTGGTGATGGATGCTACACACCCTGGCCACTATTACATGGACACTGTCTTGGGCAACCCATTTCCCATGGATATTTCTCCCACACTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005911 GO:0006355 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009506 GO:0009690 GO:0009691 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0009987 GO:0010468 GO:0010496 GO:0010497 GO:0010556 GO:0010817 GO:0015630 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022603 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042446 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046483 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048509 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

331

Amino Acids

37.08

Weight (kDa)

6.31

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	283
AccII	CGCG	1 cut(s)	323
AciI	CCGC	4 cut(s)	63, 144, 287, 363
AclWI	GGATC	5 cut(s)	373, 380, 405, 577, 605
AcoI	YGGCCR	1 cut(s)	925
AcuI	CTGAAG	2 cut(s)	312, 867
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	93, 505, 682
AjnI	CCWGG	2 cut(s)	731, 922
Alw26I	GTCTC	2 cut(s)	251, 380
AlwI	GGATC	5 cut(s)	373, 380, 405, 577, 605
AlwNI	CAGNNNCTG	3 cut(s)	140, 745, 799
AoxI	GGCC	5 cut(s)	213, 252, 411, 773, 925
AspLEI	GCGC	2 cut(s)	323, 654
AspS9I	GGNCC	2 cut(s)	97, 826
AsuHPI	GGTGA	4 cut(s)	233, 392, 421, 916
AvaII	GGWCC	2 cut(s)	97, 826
BaeGI	GKGCMC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	927
BanI	GGYRCC	1 cut(s)	283
BccI	CCATC	5 cut(s)	57, 176, 545, 790, 901
BciT130I	CCWGG	2 cut(s)	733, 924
BcoDI	GTCTC	2 cut(s)	251, 380
BfmI	CTRYAG	3 cut(s)	132, 482, 537
Bme1390I	CCNGG	2 cut(s)	733, 924
Bme18I	GGWCC	2 cut(s)	97, 826
BmgT120I	GGNCC	2 cut(s)	97, 826
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	733, 924
BmsI	GCATC	2 cut(s)	414, 901
BsaJI	CCNNGG	2 cut(s)	922, 966
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	733, 924
BseDI	CCNNGG	2 cut(s)	922, 966
BseGI	GGATG	2 cut(s)	49, 916
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	5 cut(s)	215, 254, 413, 775, 927
BshNI	GGYRCC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	251, 380
BsmBI	CGTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	5 cut(s)	215, 254, 413, 775, 927
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
Bsp19I	CCATGG	1 cut(s)	966
BspACI	CCGC	4 cut(s)	63, 144, 287, 363
BspANI	GGCC	5 cut(s)	215, 254, 413, 775, 927
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	3 cut(s)	136, 486, 541
BspPI	GGATC	5 cut(s)	373, 380, 405, 577, 605
BspQI	GCTCTTC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	922, 966
BssMI	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
BssT1I	CCWWGG	1 cut(s)	966
Bst2UI	CCWGG	2 cut(s)	733, 924
Bst4CI	ACNGT	5 cut(s)	245, 269, 662, 741, 946
Bst6I	CTCTTC	4 cut(s)	199, 205, 695, 860
BstAPI	GCANNNNNTGC	2 cut(s)	140, 742
BstC8I	GCNNGC	2 cut(s)	319, 801
BstDEI	CTNAG	1 cut(s)	576
BstDSI	CCRYGG	1 cut(s)	966
BstF5I	GGATG	2 cut(s)	49, 916
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	323, 654
BstKTI	GATC	7 cut(s)	222, 368, 388, 400, 477, 572, 613
BstMAI	GTCTC	2 cut(s)	251, 380
BstMBI	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 71, 140, 143, 329, 742, 877
BstNI	CCWGG	2 cut(s)	733, 924
BstSCI	CCNGG	2 cut(s)	731, 922
BstSFI	CTRYAG	3 cut(s)	132, 482, 537
BstSLI	GKGCMC	1 cut(s)	286
BstUI	CGCG	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	385, 610
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	2 cut(s)	385, 610
BsuRI	GGCC	5 cut(s)	215, 254, 413, 775, 927
BtgI	CCRYGG	1 cut(s)	966
BtgZI	GCGATG	1 cut(s)	564
BtsCI	GGATG	2 cut(s)	49, 916
BtsI	GCAGTG	1 cut(s)	983
BtsIMutI	CAGTG	3 cut(s)	667, 942, 983
Cac8I	GCNNGC	2 cut(s)	319, 801
CaiI	CAGNNNCTG	3 cut(s)	140, 745, 799
CciI	TCATGA	1 cut(s)	693
CfoI	GCGC	2 cut(s)	323, 654
Cfr13I	GGNCC	2 cut(s)	97, 826
CseI	GACGC	2 cut(s)	312, 321
Csp6I	GTAC	1 cut(s)	658
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	8 cut(s)	157, 179, 223, 406, 472, 694, 937, 967
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	7 cut(s)	221, 367, 387, 399, 476, 571, 612
DpnII	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
EaeI	YGGCCR	1 cut(s)	925
Eam1104I	CTCTTC	4 cut(s)	199, 205, 695, 860
EarI	CTCTTC	4 cut(s)	199, 205, 695, 860
Eco130I	CCWWGG	1 cut(s)	966
Eco147I	AGGCCT	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	668
Eco47I	GGWCC	2 cut(s)	97, 826
Eco57I	CTGAAG	2 cut(s)	312, 867
EcoRII	CCWGG	2 cut(s)	731, 922
EcoRV	GATATC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	966
ErhI	CCWWGG	1 cut(s)	966
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	8 cut(s)	160, 182, 226, 409, 475, 697, 940, 970
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	8 cut(s)	156, 178, 222, 405, 471, 693, 936, 966
FokI	GGATG	2 cut(s)	36, 923
FspI	TGCGCA	1 cut(s)	653
GlaI	GCGC	2 cut(s)	322, 653
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	5 cut(s)	215, 254, 413, 775, 927
HgaI	GACGC	2 cut(s)	312, 321
HhaI	GCGC	2 cut(s)	323, 654
Hin1II	CATG	8 cut(s)	160, 182, 226, 409, 475, 697, 940, 970
Hin6I	GCGC	2 cut(s)	321, 652
HinP1I	GCGC	2 cut(s)	321, 652
HinfI	GANTC	5 cut(s)	494, 533, 555, 788, 812
HphI	GGTGA	4 cut(s)	233, 392, 421, 916
Hpy188I	TCNGA	5 cut(s)	532, 577, 787, 886, 992
Hpy188III	TCNNGA	2 cut(s)	395, 694
HpyAV	CCTTC	1 cut(s)	891
HpyCH4III	ACNGT	5 cut(s)	245, 269, 662, 741, 946
HpyCH4V	TGCA	6 cut(s)	4, 134, 484, 539, 809, 895
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 71, 140, 143, 329, 742, 877
HpyF3I	CTNAG	1 cut(s)	576
Hsp92II	CATG	8 cut(s)	160, 182, 226, 409, 475, 697, 940, 970
HspAI	GCGC	2 cut(s)	321, 652
Kzo9I	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	631, 756
LweI	GCATC	2 cut(s)	414, 901
MalI	GATC	7 cut(s)	221, 367, 387, 399, 476, 571, 612
MboI	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
MfeI	CAATTG	1 cut(s)	844
MflI	RGATCY	2 cut(s)	385, 610
MhlI	GDGCHC	1 cut(s)	286
MlsI	TGGCCA	1 cut(s)	927
MluCI	AATT	2 cut(s)	500, 844
MluNI	TGGCCA	1 cut(s)	927
MlyI	GAGTC	3 cut(s)	503, 549, 797
MmeI	TCCRAC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	927
MscI	TGGCCA	1 cut(s)	927
MseI	TTAA	2 cut(s)	462, 594
Msp20I	TGGCCA	1 cut(s)	927
MspA1I	CMGCKG	3 cut(s)	140, 363, 646
MspR9I	CCNGG	2 cut(s)	733, 924
MunI	CAATTG	1 cut(s)	844
MvaI	CCWGG	2 cut(s)	733, 924
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	7 cut(s)	39, 71, 140, 143, 329, 742, 877
NcoI	CCATGG	1 cut(s)	966
NdeII	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
NlaIII	CATG	8 cut(s)	160, 182, 226, 409, 475, 697, 940, 970
NlaIV	GGNNCC	1 cut(s)	285
NsbI	TGCGCA	1 cut(s)	653
PagI	TCATGA	1 cut(s)	693
PceI	AGGCCT	1 cut(s)	413
PciSI	GCTCTTC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	533, 812
PflFI	GACNNNGTC	1 cut(s)	944
PleI	GAGTC	3 cut(s)	502, 549, 796
PpsI	GAGTC	3 cut(s)	502, 549, 796
Psp6I	CCWGG	2 cut(s)	731, 922
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	731, 922
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	97, 826
PstI	CTGCAG	3 cut(s)	136, 486, 541
PstNI	CAGNNNCTG	3 cut(s)	140, 745, 799
PsuI	RGATCY	2 cut(s)	385, 610
PsyI	GACNNNGTC	1 cut(s)	944
PvuII	CAGCTG	2 cut(s)	140, 646
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	462, 594
Sau3AI	GATC	7 cut(s)	219, 365, 385, 397, 474, 569, 610
Sau96I	GGNCC	2 cut(s)	97, 826
SchI	GAGTC	3 cut(s)	503, 549, 797
ScrFI	CCNGG	2 cut(s)	733, 924
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	2 cut(s)	414, 901
SfcI	CTRYAG	3 cut(s)	132, 482, 537
SinI	GGWCC	2 cut(s)	97, 826
Sse9I	AATT	2 cut(s)	500, 844
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	4 cut(s)	63, 144, 287, 363
StuI	AGGCCT	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	731, 922
StyI	CCWWGG	1 cut(s)	966
TaaI	ACNGT	5 cut(s)	245, 269, 662, 741, 946
TaqI	TCGA	2 cut(s)	558, 815
TasI	AATT	2 cut(s)	500, 844
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	533, 812
Tru1I	TTAA	2 cut(s)	462, 594
Tru9I	TTAA	2 cut(s)	462, 594
TscAI	CASTG	3 cut(s)	667, 949, 990
TspDTI	ATGAA	7 cut(s)	75, 145, 394, 595, 682, 710, 841
TspGWI	ACGGA	3 cut(s)	14, 110, 582
TspRI	CASTG	3 cut(s)	667, 949, 990
Tth111I	GACNNNGTC	1 cut(s)	944
VpaK11BI	GGWCC	2 cut(s)	97, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.