Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Reverse (-)

8548362 .. 8551192

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1112500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAAGGAGGAAGTAGTCGCAATAGTAGTAATTTAGGGTTTCTGGATTCTTCTTTAGCTGCTGCCCTAATGAATTCAGAAACCAGAACTACAAGTAGTAACAGTTATAGTAAGCAGTTTCTTTCTGTACCTTTGATCAACAATATTTACAACTTACAAAGCCATCCTCAAGAGACTACTGATCAGGAGATGGGCGTGAAAGCTAAGATTATCGCTCACCCCCTCTTCCCTCGCCTCTTGTCTGCCTATGTCAATTGCCAAAAGGTTGGGGCACCTCCTGAAGTGGTGGCTAGGTTAGAGCAGGTCTGCAGTGCTTATAATTCTGAGGCAGCAAAGAGGAGTAGCATAAGAGGAGGAGGAGGAGATGATCATCCAGACCCTGCGCTGGACCAGTTCATGGAGGCATATTGTGAGATGCTGACCAAGTACGAGGAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCCTCTCCAATATTGACTCCCAGCTCAAAGCTCTTGCTTATAACTCTAATTCCTCTTCAGAGTCTGCTAGTACTAGTGGTGGCGATTTTGTTGGACTAGGTAGATCTCCAGAAGAGGCTAATGCGATCAATGACATAGATCCTCAAGCTGAAAATAGAGAACTCAAAGTTCAGCTTTTGCACAAATACAGTGGATATTTGGGCACTCTGAAGCAGGAGTTTATGAAGAAGAAAAAGAATGGAAAATTGCCAAAGGAAGCACGGCACCAGTTGTTTGACTGGTGGTGCAGACATTACAAGTGGCCCTATCCATCGGAGGCTCAGAAGCTAGCACTGGCAGAATCAACTGGTTTGGAACTTAAACAGATAAATAATTGGTTCATCAATCAAAGGAAACGCCATTGGAAACCTTCAGAAGACATGCAATTTGTTTTGATGGATCCAACTCTTCATCAACACCATCACTATCCCCACTTCTGTATGGACAATGCAATCTGCAATCCCTTCCCCATGGATTGCACATCTACTCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

335

Amino Acids

37.72

Weight (kDa)

6.32

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	66 - 104	1.1e-20	KNOX1 domain
KNOX2	PF03791	124 - 168	6.5e-21	KNOX2 domain
ELK	PF03789	210 - 231	7.7e-09	ELK domain
Homeobox_KN	PF05920	250 - 289	3.1e-18	Homeobox KN domain
Homeodomain	PF00046	258 - 290	4.7e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 510
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	271, 732
AccB7I	CCANNNNNTGG	1 cut(s)	397
AclWI	GGATC	3 cut(s)	602, 902, 915
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	4 cut(s)	300, 510, 698, 864
AfaI	GTAC	3 cut(s)	129, 428, 541
AfiI	CCNNNNNNNGG	2 cut(s)	385, 397
AgsI	TTSAA	1 cut(s)	454
AhlI	ACTAGT	1 cut(s)	542
AluBI	AGCT	8 cut(s)	59, 203, 439, 493, 500, 617, 643, 796
AluI	AGCT	8 cut(s)	59, 203, 439, 493, 500, 617, 643, 796
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	602, 902, 915
AlwNI	CAGNNNCTG	2 cut(s)	380, 533
AoxI	GGCC	1 cut(s)	770
ApeKI	GCWGC	3 cut(s)	59, 62, 329
ApoI	RAATTY	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	388, 771
AsuHPI	GGTGA	1 cut(s)	209
AsuNHI	GCTAGC	1 cut(s)	796
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	2 cut(s)	274, 674
BamHI	GGATCC	1 cut(s)	907
BanI	GGYRCC	2 cut(s)	271, 732
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	46, 49, 341
BccI	CCATC	5 cut(s)	171, 184, 787, 898, 936
BceAI	ACGGC	1 cut(s)	746
BclI	TGATCA	3 cut(s)	135, 181, 367
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	5 cut(s)	291, 537, 543, 566, 797
BfmI	CTRYAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	572
BisI	GCNGC	3 cut(s)	60, 63, 330
BlsI	GCNGC	3 cut(s)	61, 64, 331
BmcAI	AGTACT	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	388, 771
BmiI	GGNNCC	3 cut(s)	273, 734, 909
BmsI	GCATC	1 cut(s)	405
BmtI	GCTAGC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	153, 597
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	978
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 397
Bse1I	ACTGG	5 cut(s)	391, 736, 752, 807, 820
Bse8I	GATNNNNATC	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	978
BseGI	GGATG	2 cut(s)	163, 370
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	385, 397
BseMII	CTCAG	2 cut(s)	315, 803
BseNI	ACTGG	5 cut(s)	391, 736, 752, 807, 820
BseRI	GAGGAG	5 cut(s)	352, 366, 369, 372, 375
BseSI	GKGCMC	2 cut(s)	274, 674
BseXI	GCAGC	3 cut(s)	46, 49, 341
BseYI	CCCAGC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	775
BshFI	GGCC	1 cut(s)	772
BshNI	GGYRCC	2 cut(s)	271, 732
BsiHKAI	GWGCWC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	385, 397
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	772
Bsp1286I	GDGCHC	3 cut(s)	274, 441, 674
Bsp143I	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
Bsp19I	CCATGG	1 cut(s)	978
BspANI	GGCC	1 cut(s)	772
BspCNI	CTCAG	2 cut(s)	316, 802
BspLI	GGNNCC	3 cut(s)	273, 734, 909
BspMAI	CTGCAG	1 cut(s)	311
BspMI	ACCTGC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	800
BspPI	GGATC	3 cut(s)	602, 902, 915
BspQI	GCTCTTC	1 cut(s)	429
BspT107I	GGYRCC	2 cut(s)	271, 732
BsrI	ACTGG	5 cut(s)	391, 736, 752, 807, 820
BssECI	CCNNGG	1 cut(s)	978
BssMI	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
BssT1I	CCWWGG	1 cut(s)	978
Bst4CI	ACNGT	2 cut(s)	104, 659
Bst6I	CTCTTC	5 cut(s)	230, 429, 529, 576, 921
BstC8I	GCNNGC	1 cut(s)	798
BstDEI	CTNAG	3 cut(s)	204, 324, 789
BstDSI	CCRYGG	1 cut(s)	978
BstF5I	GGATG	2 cut(s)	163, 370
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	7 cut(s)	138, 184, 370, 575, 597, 610, 910
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
BstNSI	RCATGY	1 cut(s)	892
BstSFI	CTRYAG	1 cut(s)	307
BstSLI	GKGCMC	2 cut(s)	274, 674
BstV1I	GCAGC	3 cut(s)	46, 49, 341
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	3 cut(s)	572, 607, 907
BstXI	CCANNNNNNTGG	1 cut(s)	266
BstYI	RGATCY	3 cut(s)	572, 607, 907
BsuRI	GGCC	1 cut(s)	772
BtgI	CCRYGG	1 cut(s)	978
BtsCI	GGATG	2 cut(s)	163, 370
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	3 cut(s)	316, 664, 800
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	798
CaiI	CAGNNNCTG	2 cut(s)	380, 533
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	388, 771
Csp6I	GTAC	3 cut(s)	128, 427, 540
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	4 cut(s)	397, 463, 889, 979
CviQI	GTAC	3 cut(s)	128, 427, 540
DdeI	CTNAG	3 cut(s)	204, 324, 789
DpnI	GATC	7 cut(s)	137, 183, 369, 574, 596, 609, 909
DpnII	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
Eam1104I	CTCTTC	5 cut(s)	230, 429, 529, 576, 921
EarI	CTCTTC	5 cut(s)	230, 429, 529, 576, 921
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	978
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	4 cut(s)	300, 510, 698, 864
EcoICRI	GAGCTC	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	978
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	978
FaeI	CATG	4 cut(s)	400, 466, 892, 982
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 627, 659
FatI	CATG	4 cut(s)	396, 462, 888, 978
FbaI	TGATCA	3 cut(s)	135, 181, 367
Fnu4HI	GCNGC	3 cut(s)	60, 63, 330
FokI	GGATG	2 cut(s)	150, 357
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	3 cut(s)	60, 63, 330
FspBI	CTAG	5 cut(s)	291, 537, 543, 566, 797
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	3 cut(s)	60, 63, 330
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	772
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	4 cut(s)	400, 466, 892, 982
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	4 cut(s)	47, 485, 530, 809
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	7 cut(s)	79, 325, 529, 678, 784, 792, 883
Hpy188III	TCNNGA	6 cut(s)	44, 170, 185, 278, 374, 578
HpyAV	CCTTC	3 cut(s)	460, 888, 982
HpyCH4III	ACNGT	2 cut(s)	104, 659
HpyCH4V	TGCA	7 cut(s)	309, 649, 756, 892, 959, 966, 987
HpyF3I	CTNAG	3 cut(s)	204, 324, 789
Hsp92II	CATG	4 cut(s)	400, 466, 892, 982
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	3 cut(s)	135, 181, 367
Kzo9I	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
LguI	GCTCTTC	1 cut(s)	429
Lsp1109I	GCAGC	3 cut(s)	46, 49, 341
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	5 cut(s)	291, 537, 543, 566, 797
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	7 cut(s)	137, 183, 369, 574, 596, 609, 909
MboI	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
MboII	GAAGA	9 cut(s)	42, 217, 446, 516, 593, 706, 709, 896, 908
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	3 cut(s)	572, 607, 907
MhlI	GDGCHC	3 cut(s)	274, 441, 674
MluCI	AATT	8 cut(s)	31, 73, 253, 319, 517, 713, 841, 893
MlyI	GAGTC	2 cut(s)	479, 539
MmeI	TCCRAC	2 cut(s)	541, 935
MseI	TTAA	1 cut(s)	828
MunI	CAATTG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	978
NdeII	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
NheI	GCTAGC	1 cut(s)	796
NlaIII	CATG	4 cut(s)	400, 466, 892, 982
NlaIV	GGNNCC	3 cut(s)	273, 734, 909
NspI	RCATGY	1 cut(s)	892
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	47, 809
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	61, 64, 331
PleI	GAGTC	2 cut(s)	479, 538
PpsI	GAGTC	2 cut(s)	479, 538
PsiI	TTATAA	2 cut(s)	318, 510
Psp124BI	GAGCTC	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	273, 734, 909
PspPI	GGNCC	2 cut(s)	388, 771
PstI	CTGCAG	1 cut(s)	311
PstNI	CAGNNNCTG	2 cut(s)	380, 533
PsuI	RGATCY	3 cut(s)	572, 607, 907
RsaI	GTAC	3 cut(s)	129, 428, 541
RsaNI	GTAC	3 cut(s)	128, 427, 540
SacI	GAGCTC	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	3 cut(s)	60, 63, 330
Sau3AI	GATC	7 cut(s)	135, 181, 367, 572, 594, 607, 907
Sau96I	GGNCC	2 cut(s)	388, 771
ScaI	AGTACT	1 cut(s)	541
SchI	GAGTC	2 cut(s)	479, 539
SduI	GDGCHC	3 cut(s)	274, 441, 674
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	2 cut(s)	168, 612
SmoI	CTYRAG	2 cut(s)	168, 612
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	8 cut(s)	31, 73, 253, 319, 517, 713, 841, 893
SspI	AATATT	2 cut(s)	145, 481
SspMI	CTAG	5 cut(s)	291, 537, 543, 566, 797
SstI	GAGCTC	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	978
TaaI	ACNGT	2 cut(s)	104, 659
TasI	AATT	8 cut(s)	31, 73, 253, 319, 517, 713, 841, 893
TatI	WGTACW	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	47, 809
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	3 cut(s)	316, 664, 807
TseI	GCWGC	3 cut(s)	59, 62, 329
TspDTI	ATGAA	5 cut(s)	86, 385, 707, 838, 908
TspRI	CASTG	3 cut(s)	316, 664, 807
Van91I	CCANNNNNTGG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	1 cut(s)	73
XceI	RCATGY	1 cut(s)	892
XspI	CTAG	5 cut(s)	291, 537, 543, 566, 797
ZrmI	AGTACT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.