Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Forward (+)

718128 .. 723808

Gene Structure 5681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACGGTGATGATGCCTCTGATGACTACTACCAACTCCCAGCACCATCATCTTGCTCAGCTTCACTCGAATAATAGTCCATTTGTTCTGCTACCTCCAAACTACAACAATCATCATCAGCAAGACCAAAATAACCCTGCAGCGGTGGTAGGCTGTTATTTCATGGATCACAACACCAACAACGGTGGTCATGGGAGCTCTTCTTCTTCTTCCTCTTCGTCTTCTTCGATCAAGTCAAAGATTATGGCTCATCCTCATTATCACCGTCTACTAGCTGCTTACATCAACTGTCAAAAGGTTGGGGCGCCACCGGAGGTGGTGGGGAGGCTGGAAGAAGCATGCGAGTCGGCGGCGACGGTAGGTCAGATGGTGCGTTGTAGTAGTGGAAGTGGGGATGGACATGGTTCACTAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAGGCCTACTGTGAGATGCTGATCAAGTATGAGCAAGAGGTTTCTAAACCCTTCAAGGAAGCCATGCTCTTTCTACAGAAGATCGAGTCTCAATTCACAGCCCTCACCGTTTCCTCTGCTTCTGCTACCGATTCGGGTTATGGAGAGGGAGGTATGGATAGGAACAATAAAGGATCATCTGAAGAAGTTGATGTGAATAACAACTTGTTGGTAGATCCACAAGCGGAAGATAGGGAACTCAAAGGTCAGCTTCTGCGCAAGTACAGCGGATACTTGGGCAGCTTGAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAAGAGGCCAGGCAGAAGTTGCTTGATTGGTGGAGCCGACATTACAAATGGCCTTATCCATCAGAGTCCCAGAAGTTGTCTCTTGCAGAATCGACAGGTCTGGACCAGAAGCAAATAAATAACTGGTTTATCAACCAAAGGAAGCGGCATTGGAAGCCGTCTGAGGATATGCAGATTATGGTGATGGATGCTTCTCATCCCACCCACTATTACATGAACAACATGGACGTTTCACCATCATTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005911 GO:0006355 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009506 GO:0009690 GO:0009691 GO:0009791 GO:0009889 GO:0009908 GO:0009934 GO:0009987 GO:0010468 GO:0010496 GO:0010497 GO:0010556 GO:0010817 GO:0015630 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022603 GO:0030054 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042446 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0046483 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048509 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0055044 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090567 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

339

Amino Acids

37.97

Weight (kDa)

6.76

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	77 - 115	4e-21	KNOX1 domain
KNOX2	PF03791	137 - 183	3.9e-21	KNOX2 domain
ELK	PF03789	226 - 247	3.9e-11	ELK domain
Homeobox_KN	PF05920	266 - 305	5.3e-19	Homeobox KN domain
Homeodomain	PF00046	274 - 306	1.1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	698
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	268
AciI	CCGC	5 cut(s)	143, 350, 665, 708, 913
AclWI	GGATC	5 cut(s)	174, 413, 438, 622, 650
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	496, 727
AhdI	GACNNNNNGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	776
AluBI	AGCT	7 cut(s)	61, 198, 275, 425, 691, 723, 763
AluI	AGCT	7 cut(s)	61, 198, 275, 425, 691, 723, 763
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	2 cut(s)	534, 852
AlwI	GGATC	5 cut(s)	174, 413, 438, 622, 650
AlwNI	CAGNNNCTG	1 cut(s)	694
AoxI	GGCC	3 cut(s)	444, 774, 818
ApeKI	GCWGC	4 cut(s)	140, 275, 720, 763
AspLEI	GCGC	2 cut(s)	307, 699
AspS9I	GGNCC	1 cut(s)	871
AsuHPI	GGTGA	6 cut(s)	19, 254, 425, 538, 961, 993
AvaII	GGWCC	1 cut(s)	871
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	4 cut(s)	152, 262, 732, 750
BccI	CCATC	6 cut(s)	54, 361, 389, 835, 946, 1012
BceAI	ACGGC	1 cut(s)	910
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BciT130I	CCWGG	1 cut(s)	778
BciVI	GTATCC	1 cut(s)	704
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	534, 852
BfaI	CTAG	2 cut(s)	272, 410
BfmI	CTRYAG	2 cut(s)	138, 515
BfoI	RGCGCY	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	704
BisI	GCNGC	6 cut(s)	141, 276, 351, 721, 764, 914
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	6 cut(s)	142, 277, 352, 722, 765, 915
Bme1390I	CCNGG	1 cut(s)	778
Bme18I	GGWCC	1 cut(s)	871
BmeRI	GACNNNNNGTC	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	871
BmiI	GGNNCC	2 cut(s)	306, 803
BmrFI	CCNGG	1 cut(s)	778
BmsI	GCATC	3 cut(s)	3, 447, 946
BpiI	GAAGAC	1 cut(s)	213
Bpu1102I	GCTNAGC	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	1007
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	778
BseGI	GGATG	4 cut(s)	250, 400, 961, 964
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	2 cut(s)	71, 921
BseNI	ACTGG	1 cut(s)	896
BseXI	GCAGC	4 cut(s)	152, 262, 732, 750
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	3 cut(s)	446, 776, 820
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	534, 852
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	3 cut(s)	446, 776, 820
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
Bsp1720I	GCTNAGC	1 cut(s)	57
BspACI	CCGC	5 cut(s)	143, 350, 665, 708, 913
BspANI	GGCC	3 cut(s)	446, 776, 820
BspCNI	CTCAG	2 cut(s)	70, 922
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	306, 803
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	5 cut(s)	174, 413, 438, 622, 650
BspQI	GCTCTTC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	1007
BsrI	ACTGG	1 cut(s)	896
BssMI	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
BssNI	GRCGYC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	778
Bst4CI	ACNGT	7 cut(s)	7, 185, 266, 290, 358, 452, 550
Bst6I	CTCTTC	3 cut(s)	205, 220, 740
BstACI	GRCGYC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	787
BstC8I	GCNNGC	2 cut(s)	340, 761
BstDEI	CTNAG	2 cut(s)	57, 930
BstF5I	GGATG	4 cut(s)	250, 400, 961, 964
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	2 cut(s)	307, 699
BstKTI	GATC	8 cut(s)	169, 231, 421, 433, 465, 525, 617, 658
BstMAI	GTCTC	2 cut(s)	534, 852
BstMBI	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	705, 787, 922
BstNI	CCWGG	1 cut(s)	778
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	776
BstSFI	CTRYAG	2 cut(s)	138, 515
BstV1I	GCAGC	4 cut(s)	152, 262, 732, 750
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	2 cut(s)	418, 655
BstYI	RGATCY	2 cut(s)	418, 655
BsuI	GTATCC	1 cut(s)	704
BsuRI	GGCC	3 cut(s)	446, 776, 820
BtsCI	GGATG	4 cut(s)	250, 400, 961, 964
Cac8I	GCNNGC	2 cut(s)	340, 761
CaiI	CAGNNNCTG	1 cut(s)	694
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	2 cut(s)	307, 699
Cfr13I	GGNCC	1 cut(s)	871
Csp6I	GTAC	1 cut(s)	703
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	9 cut(s)	163, 191, 339, 401, 439, 505, 739, 982, 991
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	2 cut(s)	57, 930
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	8 cut(s)	168, 230, 420, 432, 464, 524, 616, 657
DpnII	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
DraIII	CACNNNGTG	1 cut(s)	413
DriI	GACNNNNNGTC	1 cut(s)	360
Eam1104I	CTCTTC	3 cut(s)	205, 220, 740
Eam1105I	GACNNNNNGTC	1 cut(s)	360
EarI	CTCTTC	3 cut(s)	205, 220, 740
Ecl136II	GAGCTC	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	871
Eco53kI	GAGCTC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	776
EcoT38I	GRGCYC	1 cut(s)	200
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
FaeI	CATG	9 cut(s)	166, 194, 342, 404, 442, 508, 742, 985, 994
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	9 cut(s)	162, 190, 338, 400, 438, 504, 738, 981, 990
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	6 cut(s)	141, 276, 351, 721, 764, 914
FokI	GGATG	4 cut(s)	237, 407, 951, 968
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	6 cut(s)	141, 276, 351, 721, 764, 914
FspBI	CTAG	2 cut(s)	272, 410
FspI	TGCGCA	1 cut(s)	698
GlaI	GCGC	2 cut(s)	306, 698
GluI	GCNGC	6 cut(s)	141, 276, 351, 721, 764, 914
GsaI	CCCAGC	1 cut(s)	43
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	446, 776, 820
HapII	CCGG	1 cut(s)	311
HhaI	GCGC	2 cut(s)	307, 699
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	9 cut(s)	166, 194, 342, 404, 442, 508, 742, 985, 994
Hin6I	GCGC	2 cut(s)	305, 697
HinP1I	GCGC	2 cut(s)	305, 697
HinfI	GANTC	5 cut(s)	344, 527, 572, 833, 857
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	6 cut(s)	19, 254, 425, 538, 961, 993
Hpy166II	GTNNAC	2 cut(s)	269, 407
Hpy188I	TCNGA	6 cut(s)	21, 366, 622, 832, 931, 1016
Hpy188III	TCNNGA	3 cut(s)	428, 739, 869
Hpy8I	GTNNAC	2 cut(s)	269, 407
Hpy99I	CGWCG	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	7 cut(s)	7, 185, 266, 290, 358, 452, 550
HpyCH4IV	ACGT	1 cut(s)	996
HpyCH4V	TGCA	3 cut(s)	140, 854, 940
HpyF10VI	GCNNNNNNNGC	3 cut(s)	705, 787, 922
HpyF3I	CTNAG	2 cut(s)	57, 930
HpySE526I	ACGT	1 cut(s)	996
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	9 cut(s)	166, 194, 342, 404, 442, 508, 742, 985, 994
HspAI	GCGC	2 cut(s)	305, 697
KasI	GGCGCC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	195, 801
Lsp1109I	GCAGC	4 cut(s)	152, 262, 732, 750
LweI	GCATC	3 cut(s)	3, 447, 946
MaeI	CTAG	2 cut(s)	272, 410
MaeII	ACGT	1 cut(s)	996
MalI	GATC	8 cut(s)	168, 230, 420, 432, 464, 524, 616, 657
MboI	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
MflI	RGATCY	2 cut(s)	418, 655
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	1 cut(s)	533
Mly113I	GGCGCC	1 cut(s)	305
MlyI	GAGTC	3 cut(s)	353, 536, 842
MspA1I	CMGCKG	2 cut(s)	143, 708
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	778
MvaI	CCWGG	1 cut(s)	778
MwoI	GCNNNNNNNGC	3 cut(s)	705, 787, 922
NarI	GGCGCC	1 cut(s)	305
NdeII	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
NlaIII	CATG	9 cut(s)	166, 194, 342, 404, 442, 508, 742, 985, 994
NlaIV	GGNNCC	2 cut(s)	306, 803
NsbI	TGCGCA	1 cut(s)	698
NspI	RCATGY	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	572, 857
PkrI	GCNGC	6 cut(s)	142, 277, 352, 722, 765, 915
PleI	GAGTC	3 cut(s)	352, 535, 841
PluTI	GGCGCC	1 cut(s)	308
PpsI	GAGTC	3 cut(s)	352, 535, 841
Psp124BI	GAGCTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	776
PspN4I	GGNNCC	2 cut(s)	306, 803
PspPI	GGNCC	1 cut(s)	871
PstI	CTGCAG	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	694
PsuI	RGATCY	2 cut(s)	418, 655
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
SacI	GAGCTC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	205
SatI	GCNGC	6 cut(s)	141, 276, 351, 721, 764, 914
Sau3AI	GATC	8 cut(s)	166, 228, 418, 430, 462, 522, 614, 655
Sau96I	GGNCC	1 cut(s)	871
SchI	GAGTC	3 cut(s)	353, 536, 842
ScrFI	CCNGG	1 cut(s)	778
SduI	GDGCHC	1 cut(s)	200
SfaNI	GCATC	3 cut(s)	3, 447, 946
SfcI	CTRYAG	2 cut(s)	138, 515
SfoI	GGCGCC	1 cut(s)	306
SinI	GGWCC	1 cut(s)	871
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	1 cut(s)	533
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	5 cut(s)	143, 350, 665, 708, 913
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	272, 410
SstI	GAGCTC	1 cut(s)	200
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	776
TaaI	ACNGT	7 cut(s)	7, 185, 266, 290, 358, 452, 550
TaiI	ACGT	1 cut(s)	999
TaqI	TCGA	4 cut(s)	68, 227, 525, 860
TasI	AATT	1 cut(s)	533
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	2 cut(s)	353, 916
TfiI	GAWTC	2 cut(s)	572, 857
TseI	GCWGC	4 cut(s)	140, 275, 720, 763
TspDTI	ATGAA	5 cut(s)	151, 427, 727, 755, 998
VpaK11BI	GGWCC	1 cut(s)	871
XceI	RCATGY	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	268
XspI	CTAG	2 cut(s)	272, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.