Rw2G044280

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002529
Physical Location & Seq
Forward (+)
70948110 .. 70950921
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044280.1

Sequence Viewer

Length: 999 bp
ATGGAGGGTGGGAGTAATAATTGTAATAGTAAGTATTACAGTCATGGTGTGATGGGATCTGGGTCTTCTTCTGGGATGTTGATGCCTCCTCCTCTTGTGAATTCTTATGCTACTGCTGCAGATCAAACTAGTAGTTCTAGTAACCAGCAGCACTATGTTTCTCTGCCTTTTACCAACATCAACCCAAACCAAAATGATAGTCAGGAATATGAGATGAGTATGAAAGCTAAGATCATGGGTCATCCTCTCTTCCCTCGCCTCTTGGCCTCTTATGTCAATTGTCAAAAGGTTGGGGCACCTGCTGAAGTGGTGGCTAGGTTAGAGCATGCGGCTGCGGCCTCAATATCTTATGCGGCTGCAATTTCTGAAGCATGTGAAGAATCAGAACCAGACCCAGAGCTGGATCAGTTCATGGAGGCCTATTGTGAGATGCTTGCTAAGTACCATGAAGAGCTCACAAAGCCCTTCCATGAAGCCATGCTTGGCCTCTCTAAAATCAACTCCCAGCTCAAAGCTCTATCCGTTTCACCATCATATTCTGCTAGTACTGGTGATCTTGTTAGACAAAGTGGATCTTCAGAAGAGGCTGATGTGAATGAGAGTGGCATAGATCCAAGAGCCGAAGATTGGGATATTAAAGCTAAGCTTCTGCAAAAATATGGTGGATGTCTTGGCAGTCTCAGCCAGGAGTTGAAGCAGAAGAAAAAAAACGGAAAGTTGCCCAAGGAAGCCCGGGTTCAATTGCAAGAATGGTGGAGCAGAAATTACACATGGCCCTATCCATCGGAGCCTCAAAAGTTCGGACTAGCAGCATCTACAGGTCTGACTGTGAAGCAGATAAACAACTGGTTCATAAACCAAAGGAAACGCCATTGGAAGCCGTCTTCAGAGGGTACGCAACTTGCTATGGTGGACGTGGATCATCCCCAATTCTACTATATGGACCATCTCATCTGCAATCCTTTACCTATGGATTGCACATCTACTCCTTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

332

Amino Acids

36.8

Weight (kDa)

5.63

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 74 - 113 1.8e-19 KNOX1 domain
KNOX2 PF03791 130 - 173 3.9e-20 KNOX2 domain
Homeobox_KN PF05920 251 - 290 2.5e-17 Homeobox KN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AccB1I GGYRCC 1 cut(s) 295
AciI CCGC 3 cut(s) 329, 335, 353
AclWI GGATC 5 cut(s) 64, 411, 580, 605, 927
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 4 cut(s) 324, 387, 561, 870
AfaI GTAC 3 cut(s) 443, 547, 895
AfiI CCNNNNNNNGG 2 cut(s) 400, 627
AgsI TTSAA 2 cut(s) 694, 740
AhlI ACTAGT 1 cut(s) 128
AjiI CACGTC 1 cut(s) 916
AjnI CCWGG 1 cut(s) 684
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 7 cut(s) 227, 400, 454, 508, 515, 641, 646
AluI AGCT 7 cut(s) 227, 400, 454, 508, 515, 641, 646
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 683
AlwI GGATC 5 cut(s) 64, 411, 580, 605, 927
Ama87I CYCGRG 1 cut(s) 732
AoxI GGCC 5 cut(s) 264, 336, 417, 484, 773
ApeKI GCWGC 5 cut(s) 116, 148, 332, 356, 809
ApoI RAATTY 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AspS9I GGNCC 2 cut(s) 774, 943
AsuC2I CCSGG 2 cut(s) 733, 734
AsuHPI GGTGA 2 cut(s) 519, 563
AvaI CYCGRG 1 cut(s) 732
AvaII GGWCC 1 cut(s) 943
BaeGI GKGCMC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 57, 876
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 103, 160, 319, 343, 821
BccI CCATC 4 cut(s) 46, 538, 790, 954
BceAI ACGGC 1 cut(s) 865
BciT130I CCWGG 1 cut(s) 686
BcnI CCSGG 2 cut(s) 733, 734
BcoDI GTCTC 1 cut(s) 683
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 5 cut(s) 129, 138, 315, 543, 806
BfmI CTRYAG 2 cut(s) 117, 816
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 8 cut(s) 118, 150, 331, 334, 337, 355, 358, 811
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 686, 733, 734
Bme18I GGWCC 1 cut(s) 943
BmeT110I CYCGRG 1 cut(s) 732
BmgBI CACGTC 1 cut(s) 916
BmgT120I GGNCC 2 cut(s) 774, 943
BmiI GGNNCC 2 cut(s) 297, 789
BmrFI CCNGG 3 cut(s) 686, 733, 734
BmsI GCATC 3 cut(s) 72, 420, 821
BpiI GAAGAC 2 cut(s) 57, 876
Bpu1102I GCTNAGC 1 cut(s) 642
BpuMI CCSGG 2 cut(s) 733, 734
BsaJI CCNNGG 2 cut(s) 723, 732
BsaXI ACNNNNNCTCC 1 cut(s) 970
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 627
Bse1I ACTGG 2 cut(s) 553, 851
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 2 cut(s) 723, 732
BseGI GGATG 4 cut(s) 81, 241, 671, 922
BseLI CCNNNNNNNGG 2 cut(s) 400, 627
BseMII CTCAG 1 cut(s) 694
BseNI ACTGG 2 cut(s) 553, 851
BseRI GAGGAG 2 cut(s) 78, 81
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 5 cut(s) 103, 160, 319, 343, 821
BseYI CCCAGC 1 cut(s) 504
BshFI GGCC 5 cut(s) 266, 338, 419, 486, 775
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 732
BsiSI CCGG 1 cut(s) 733
BslI CCNNNNNNNGG 2 cut(s) 400, 627
BsmAI GTCTC 1 cut(s) 683
BsnI GGCC 5 cut(s) 266, 338, 419, 486, 775
BsoBI CYCGRG 1 cut(s) 732
Bsp1286I GDGCHC 2 cut(s) 298, 456
Bsp143I GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 3 cut(s) 329, 335, 353
BspANI GGCC 5 cut(s) 266, 338, 419, 486, 775
BspCNI CTCAG 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 297, 789
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 5 cut(s) 64, 411, 580, 605, 927
BspQI GCTCTTC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 295
BsrI ACTGG 2 cut(s) 553, 851
BssECI CCNNGG 2 cut(s) 723, 732
BssMI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
BssT1I CCWWGG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 686
Bst4CI ACNGT 2 cut(s) 41, 829
Bst6I CTCTTC 3 cut(s) 254, 444, 576
BstC8I GCNNGC 2 cut(s) 327, 435
BstDEI CTNAG 4 cut(s) 228, 438, 642, 680
BstF5I GGATG 4 cut(s) 81, 241, 671, 922
BstKTI GATC 8 cut(s) 59, 124, 234, 406, 556, 575, 613, 922
BstMAI GTCTC 1 cut(s) 683
BstMBI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
BstMWI GCNNNNNNNGC 4 cut(s) 116, 335, 460, 681
BstNI CCWGG 1 cut(s) 686
BstNSI RCATGY 2 cut(s) 329, 375
BstSCI CCNGG 3 cut(s) 684, 731, 732
BstSFI CTRYAG 2 cut(s) 117, 816
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 5 cut(s) 103, 160, 319, 343, 821
BstV2I GAAGAC 2 cut(s) 57, 876
BstX2I RGATCY 3 cut(s) 56, 572, 610
BstYI RGATCY 3 cut(s) 56, 572, 610
BsuRI GGCC 5 cut(s) 266, 338, 419, 486, 775
BtrI CACGTC 1 cut(s) 916
BtsCI GGATG 4 cut(s) 81, 241, 671, 922
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 327, 435
Cfr13I GGNCC 2 cut(s) 774, 943
Cfr9I CCCGGG 1 cut(s) 732
Csp6I GTAC 3 cut(s) 442, 546, 894
CspCI CAANNNNNGTGG 2 cut(s) 734, 769
CviAII CATG 9 cut(s) 44, 235, 326, 372, 412, 446, 470, 478, 771
CviQI GTAC 3 cut(s) 442, 546, 894
DdeI CTNAG 4 cut(s) 228, 438, 642, 680
DpnI GATC 8 cut(s) 58, 123, 233, 405, 555, 574, 612, 921
DpnII GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
Eam1104I CTCTTC 3 cut(s) 254, 444, 576
EarI CTCTTC 3 cut(s) 254, 444, 576
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 723
Eco147I AGGCCT 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 943
Eco53kI GAGCTC 1 cut(s) 454
Eco57I CTGAAG 4 cut(s) 324, 387, 561, 870
Eco88I CYCGRG 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 684
EcoT14I CCWWGG 1 cut(s) 723
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 723
FaeI CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
FalI AAGNNNNNCTT 6 cut(s) 465, 497, 559, 591, 630, 662
FatI CATG 9 cut(s) 43, 234, 325, 371, 411, 445, 469, 477, 770
Fnu4HI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
FokI GGATG 4 cut(s) 88, 228, 678, 909
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
FspBI CTAG 5 cut(s) 129, 138, 315, 543, 806
GluI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 5 cut(s) 266, 338, 419, 486, 775
HapII CCGG 1 cut(s) 733
Hin1II CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 1 cut(s) 380
HpaII CCGG 1 cut(s) 733
HphI GGTGA 2 cut(s) 519, 563
Hpy166II GTNNAC 1 cut(s) 913
Hpy188I TCNGA 7 cut(s) 367, 385, 580, 787, 803, 825, 889
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 913
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 41, 829
HpyCH4IV ACGT 1 cut(s) 915
HpyCH4V TGCA 6 cut(s) 119, 359, 652, 745, 957, 978
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 335, 460, 681
HpyF3I CTNAG 4 cut(s) 228, 438, 642, 680
HpySE526I ACGT 1 cut(s) 915
Hsp92II CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
Kzo9I GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 2 cut(s) 756, 787
Lsp1109I GCAGC 5 cut(s) 103, 160, 319, 343, 821
LweI GCATC 3 cut(s) 72, 420, 821
MaeI CTAG 5 cut(s) 129, 138, 315, 543, 806
MaeII ACGT 1 cut(s) 915
MaeIII GTNAC 1 cut(s) 140
MalI GATC 8 cut(s) 58, 123, 233, 405, 555, 574, 612, 921
MboI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
MfeI CAATTG 2 cut(s) 277, 740
MflI RGATCY 3 cut(s) 56, 572, 610
MhlI GDGCHC 2 cut(s) 298, 456
MluCI AATT 7 cut(s) 19, 100, 277, 360, 740, 763, 929
MseI TTAA 1 cut(s) 636
MspI CCGG 1 cut(s) 733
MspR9I CCNGG 3 cut(s) 686, 733, 734
MunI CAATTG 2 cut(s) 277, 740
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 4 cut(s) 116, 335, 460, 681
NciI CCSGG 2 cut(s) 733, 734
NdeII GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
NlaIII CATG 9 cut(s) 47, 238, 329, 375, 415, 449, 473, 481, 774
NlaIV GGNNCC 2 cut(s) 297, 789
NspI RCATGY 2 cut(s) 329, 375
PaeI GCATGC 1 cut(s) 329
PaqCI CACCTGC 1 cut(s) 307
PceI AGGCCT 1 cut(s) 419
PciSI GCTCTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 380
PkrI GCNGC 8 cut(s) 118, 150, 331, 334, 337, 355, 358, 811
Psp124BI GAGCTC 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 297, 789
PspPI GGNCC 2 cut(s) 774, 943
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 3 cut(s) 56, 572, 610
RsaI GTAC 3 cut(s) 443, 547, 895
RsaNI GTAC 3 cut(s) 442, 546, 894
SacI GAGCTC 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 8 cut(s) 117, 149, 330, 333, 336, 354, 357, 810
Sau3AI GATC 8 cut(s) 56, 121, 231, 403, 553, 572, 610, 919
Sau96I GGNCC 2 cut(s) 774, 943
ScaI AGTACT 1 cut(s) 547
ScrFI CCNGG 3 cut(s) 686, 733, 734
SduI GDGCHC 2 cut(s) 298, 456
SfaNI GCATC 3 cut(s) 72, 420, 821
SfcI CTRYAG 2 cut(s) 117, 816
SinI GGWCC 1 cut(s) 943
SmaI CCCGGG 1 cut(s) 734
SpeI ACTAGT 1 cut(s) 128
SphI GCATGC 1 cut(s) 329
Sse9I AATT 7 cut(s) 19, 100, 277, 360, 740, 763, 929
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 3 cut(s) 329, 335, 353
SspMI CTAG 5 cut(s) 129, 138, 315, 543, 806
SstI GAGCTC 1 cut(s) 456
StuI AGGCCT 1 cut(s) 419
StyD4I CCNGG 3 cut(s) 684, 731, 732
StyI CCWWGG 1 cut(s) 723
TaaI ACNGT 2 cut(s) 41, 829
TaiI ACGT 1 cut(s) 918
TasI AATT 7 cut(s) 19, 100, 277, 360, 740, 763, 929
TatI WGTACW 1 cut(s) 545
TauI GCSGC 3 cut(s) 332, 338, 356
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TseI GCWGC 5 cut(s) 116, 148, 332, 356, 809
TspDTI ATGAA 5 cut(s) 236, 400, 462, 486, 841
TspGWI ACGGA 2 cut(s) 511, 726
TspMI CCCGGG 1 cut(s) 732
VpaK11BI GGWCC 1 cut(s) 943
XapI RAATTY 1 cut(s) 100
XceI RCATGY 2 cut(s) 329, 375
XmaI CCCGGG 1 cut(s) 732
XspI CTAG 5 cut(s) 129, 138, 315, 543, 806
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.