RchiOBHm_Chr2g0158421

homeobox protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002529
Physical Location & Seq
Forward (+)
74713141 .. 74716345
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52710

Sequence Viewer

Length: 1050 bp
ATGGAGAGTGAAAGATGGTTTAGGGTTTCTAATGTGAGAGAGATAGAGAAGATGGAGGGTGGGAGTAATAATTGTAATAGTAAGTATTACAGTCATGGTGTGATGGGATCTGGGTCTTCTTCTGGGATGTTGATGCCTCCTCCTCTTGTGAATTCTTATGCTACTGCTGCAGATCAAACTAGTAGTTCTAGTAACCAGCAGCACTACGTTTCTCTGCCTTTTACCAACATCAACCCAAACCAAAATGATAGTCAGGAATATGAGATGAGTATGAAAGCTAAGATCATGGGTCATCCTCTCTTCCCTCGCCTCTTGGCCTCTTATGTCAATTGTCAAAAGGTTGGGGCACCTGCTGAAGTGGTGGCTAGGTTAGAGCATGCGGCTGCGGCCTCAATATCTTATGCGGCTGCAATTTCGGAAGCATGTGAAGAATCAGAACCAGACCCAGAGCTGGATCAGTTCATGGAGGCCTATTGTGAGATGCTTGCTAAGTACCATGAAGAGCTCACAAAGCCCTTCCATGAAGCCATGCTTGGCCTCTCTAAAATCAACTCCCAGCTCAAAGCTCTATCCGTTTCACCATCATATTCTGCTAGTACTGGTGATCTTGTTAGACAAAGGGGATCTTCAGAAGAGGCTGATGTGAATGAGAGTGGCATAGATCCAAGAGCCGAAGATTGGGATATTAAAGCTAAGCTTCTGCAAAAATATGGTGGATGTCTTGGCAGTCTCAGCCAGGAGTTGAAGCAGAAGAAAAAAAACGGAAAGTTGCCCAAGGAAGCCCGGGTTCAATTGCAAGAATGGTGGAGCAGAAATTACACATGGCCCTATCCATCGGAGCCTCAAAAGTTCGGACTAGCAGCATCTACAGGTCTGACTGTGAAGCAGATAAACAACTGGTTCATAAACCAAAGGAAACGCCATTGGAAGCCGTCTTCAGAGGGTATGCAACTTGCTATGGTGGACGTGGATCATCCCCAATTCTACTATATGGACCATCTCATCTGCAATCCTTTACCTATGGATTGCACATCTACTCCTTTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04550 ko05202 map04550 map05202
Pfam Domains
Protein Families
ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

349

Amino Acids

39.08

Weight (kDa)

5.77

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KNOX1 PF03790 91 - 130 2e-19 KNOX1 domain
KNOX2 PF03791 147 - 190 4.2e-20 KNOX2 domain
Homeobox_KN PF05920 268 - 307 2.7e-17 Homeobox KN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 358
Acc36I ACCTGC 1 cut(s) 358
AccB1I GGYRCC 1 cut(s) 346
AciI CCGC 3 cut(s) 380, 386, 404
AclWI GGATC 5 cut(s) 115, 462, 631, 656, 978
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 3 cut(s) 375, 612, 921
AfaI GTAC 2 cut(s) 494, 598
AfiI CCNNNNNNNGG 2 cut(s) 451, 678
AgsI TTSAA 2 cut(s) 745, 791
AhlI ACTAGT 1 cut(s) 179
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 7 cut(s) 278, 451, 505, 559, 566, 692, 697
AluI AGCT 7 cut(s) 278, 451, 505, 559, 566, 692, 697
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 734
AlwI GGATC 5 cut(s) 115, 462, 631, 656, 978
Ama87I CYCGRG 1 cut(s) 783
AoxI GGCC 5 cut(s) 315, 387, 468, 535, 824
ApeKI GCWGC 5 cut(s) 167, 199, 383, 407, 860
ApoI RAATTY 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 235, 267
AspS9I GGNCC 2 cut(s) 825, 994
AsuC2I CCSGG 2 cut(s) 784, 785
AsuHPI GGTGA 2 cut(s) 570, 614
AvaI CYCGRG 1 cut(s) 783
AvaII GGWCC 1 cut(s) 994
BaeGI GKGCMC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 2 cut(s) 108, 927
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 5 cut(s) 154, 211, 370, 394, 872
BccI CCATC 6 cut(s) 9, 46, 97, 589, 841, 1005
BceAI ACGGC 1 cut(s) 916
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 2 cut(s) 784, 785
BcoDI GTCTC 1 cut(s) 734
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 5 cut(s) 180, 189, 366, 594, 857
BfmI CTRYAG 2 cut(s) 168, 867
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 8 cut(s) 168, 200, 381, 384, 387, 405, 408, 861
BlpI GCTNAGC 1 cut(s) 693
BlsI GCNGC 8 cut(s) 169, 201, 382, 385, 388, 406, 409, 862
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 3 cut(s) 737, 784, 785
Bme18I GGWCC 1 cut(s) 994
BmeT110I CYCGRG 1 cut(s) 783
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 2 cut(s) 825, 994
BmiI GGNNCC 2 cut(s) 348, 840
BmrFI CCNGG 3 cut(s) 737, 784, 785
BmsI GCATC 3 cut(s) 123, 471, 872
BpiI GAAGAC 2 cut(s) 108, 927
Bpu1102I GCTNAGC 1 cut(s) 693
BpuMI CCSGG 2 cut(s) 784, 785
BsaJI CCNNGG 2 cut(s) 774, 783
BsaXI ACNNNNNCTCC 1 cut(s) 1021
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 678
Bse1I ACTGG 2 cut(s) 604, 902
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 2 cut(s) 774, 783
BseGI GGATG 4 cut(s) 132, 292, 722, 973
BseLI CCNNNNNNNGG 2 cut(s) 451, 678
BseMII CTCAG 1 cut(s) 745
BseNI ACTGG 2 cut(s) 604, 902
BseRI GAGGAG 2 cut(s) 129, 132
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 5 cut(s) 154, 211, 370, 394, 872
BseYI CCCAGC 1 cut(s) 555
BshFI GGCC 5 cut(s) 317, 389, 470, 537, 826
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 507
BsiHKCI CYCGRG 1 cut(s) 783
BsiSI CCGG 1 cut(s) 784
BslI CCNNNNNNNGG 2 cut(s) 451, 678
BsmAI GTCTC 1 cut(s) 734
BsnI GGCC 5 cut(s) 317, 389, 470, 537, 826
BsoBI CYCGRG 1 cut(s) 783
Bsp1286I GDGCHC 2 cut(s) 349, 507
Bsp143I GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
Bsp1720I GCTNAGC 1 cut(s) 693
BspACI CCGC 3 cut(s) 380, 386, 404
BspANI GGCC 5 cut(s) 317, 389, 470, 537, 826
BspCNI CTCAG 1 cut(s) 744
BspLI GGNNCC 2 cut(s) 348, 840
BspMAI CTGCAG 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 5 cut(s) 115, 462, 631, 656, 978
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 346
BsrI ACTGG 2 cut(s) 604, 902
BssECI CCNNGG 2 cut(s) 774, 783
BssMI GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
BssT1I CCWWGG 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 2 cut(s) 92, 880
Bst6I CTCTTC 3 cut(s) 305, 495, 627
BstC8I GCNNGC 2 cut(s) 378, 486
BstDEI CTNAG 4 cut(s) 279, 489, 693, 731
BstF5I GGATG 4 cut(s) 132, 292, 722, 973
BstKTI GATC 8 cut(s) 110, 175, 285, 457, 607, 626, 664, 973
BstMAI GTCTC 1 cut(s) 734
BstMBI GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
BstMWI GCNNNNNNNGC 4 cut(s) 167, 386, 511, 732
BstNI CCWGG 1 cut(s) 737
BstNSI RCATGY 2 cut(s) 380, 426
BstSCI CCNGG 3 cut(s) 735, 782, 783
BstSFI CTRYAG 2 cut(s) 168, 867
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 5 cut(s) 154, 211, 370, 394, 872
BstV2I GAAGAC 2 cut(s) 108, 927
BstX2I RGATCY 3 cut(s) 107, 623, 661
BstYI RGATCY 3 cut(s) 107, 623, 661
BsuRI GGCC 5 cut(s) 317, 389, 470, 537, 826
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 4 cut(s) 132, 292, 722, 973
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 2 cut(s) 378, 486
Cfr13I GGNCC 2 cut(s) 825, 994
Cfr9I CCCGGG 1 cut(s) 783
Csp6I GTAC 2 cut(s) 493, 597
CspCI CAANNNNNGTGG 2 cut(s) 785, 820
CviAII CATG 9 cut(s) 95, 286, 377, 423, 463, 497, 521, 529, 822
CviQI GTAC 2 cut(s) 493, 597
DdeI CTNAG 4 cut(s) 279, 489, 693, 731
DpnI GATC 8 cut(s) 109, 174, 284, 456, 606, 625, 663, 972
DpnII GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
Eam1104I CTCTTC 3 cut(s) 305, 495, 627
EarI CTCTTC 3 cut(s) 305, 495, 627
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 1 cut(s) 774
Eco147I AGGCCT 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 994
Eco53kI GAGCTC 1 cut(s) 505
Eco57I CTGAAG 3 cut(s) 375, 612, 921
Eco88I CYCGRG 1 cut(s) 783
EcoICRI GAGCTC 1 cut(s) 505
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 774
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 774
FaeI CATG 9 cut(s) 98, 289, 380, 426, 466, 500, 524, 532, 825
FalI AAGNNNNNCTT 6 cut(s) 516, 548, 610, 642, 681, 713
FatI CATG 9 cut(s) 94, 285, 376, 422, 462, 496, 520, 528, 821
Fnu4HI GCNGC 8 cut(s) 168, 200, 381, 384, 387, 405, 408, 861
FokI GGATG 4 cut(s) 139, 279, 729, 960
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 8 cut(s) 168, 200, 381, 384, 387, 405, 408, 861
FspBI CTAG 5 cut(s) 180, 189, 366, 594, 857
GluI GCNGC 8 cut(s) 168, 200, 381, 384, 387, 405, 408, 861
GsaI CCCAGC 1 cut(s) 559
HaeIII GGCC 5 cut(s) 317, 389, 470, 537, 826
HapII CCGG 1 cut(s) 784
Hin1II CATG 9 cut(s) 98, 289, 380, 426, 466, 500, 524, 532, 825
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 1 cut(s) 431
HpaII CCGG 1 cut(s) 784
HphI GGTGA 2 cut(s) 570, 614
Hpy166II GTNNAC 1 cut(s) 964
Hpy188I TCNGA 7 cut(s) 418, 436, 631, 838, 854, 876, 940
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 964
HpyAV CCTTC 1 cut(s) 526
HpyCH4III ACNGT 2 cut(s) 92, 880
HpyCH4IV ACGT 2 cut(s) 207, 966
HpyCH4V TGCA 7 cut(s) 170, 410, 703, 796, 949, 1008, 1029
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 386, 511, 732
HpyF3I CTNAG 4 cut(s) 279, 489, 693, 731
HpySE526I ACGT 2 cut(s) 207, 966
Hsp92II CATG 9 cut(s) 98, 289, 380, 426, 466, 500, 524, 532, 825
Kzo9I GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 807, 838
Lsp1109I GCAGC 5 cut(s) 154, 211, 370, 394, 872
LweI GCATC 3 cut(s) 123, 471, 872
MaeI CTAG 5 cut(s) 180, 189, 366, 594, 857
MaeII ACGT 2 cut(s) 207, 966
MaeIII GTNAC 1 cut(s) 191
MalI GATC 8 cut(s) 109, 174, 284, 456, 606, 625, 663, 972
MboI GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
MfeI CAATTG 2 cut(s) 328, 791
MflI RGATCY 3 cut(s) 107, 623, 661
MhlI GDGCHC 2 cut(s) 349, 507
MluCI AATT 7 cut(s) 70, 151, 328, 411, 791, 814, 980
MseI TTAA 1 cut(s) 687
MspI CCGG 1 cut(s) 784
MspR9I CCNGG 3 cut(s) 737, 784, 785
MunI CAATTG 2 cut(s) 328, 791
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 4 cut(s) 167, 386, 511, 732
NciI CCSGG 2 cut(s) 784, 785
NdeII GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
NlaIII CATG 9 cut(s) 98, 289, 380, 426, 466, 500, 524, 532, 825
NlaIV GGNNCC 2 cut(s) 348, 840
NspI RCATGY 2 cut(s) 380, 426
PaeI GCATGC 1 cut(s) 380
PaqCI CACCTGC 1 cut(s) 358
PceI AGGCCT 1 cut(s) 470
PciSI GCTCTTC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 8 cut(s) 169, 201, 382, 385, 388, 406, 409, 862
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 348, 840
PspPI GGNCC 2 cut(s) 825, 994
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 3 cut(s) 107, 623, 661
RsaI GTAC 2 cut(s) 494, 598
RsaNI GTAC 2 cut(s) 493, 597
SacI GAGCTC 1 cut(s) 507
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 8 cut(s) 168, 200, 381, 384, 387, 405, 408, 861
Sau3AI GATC 8 cut(s) 107, 172, 282, 454, 604, 623, 661, 970
Sau96I GGNCC 2 cut(s) 825, 994
ScaI AGTACT 1 cut(s) 598
ScrFI CCNGG 3 cut(s) 737, 784, 785
SduI GDGCHC 2 cut(s) 349, 507
SfaNI GCATC 3 cut(s) 123, 471, 872
SfcI CTRYAG 2 cut(s) 168, 867
SinI GGWCC 1 cut(s) 994
SmaI CCCGGG 1 cut(s) 785
SpeI ACTAGT 1 cut(s) 179
SphI GCATGC 1 cut(s) 380
Sse9I AATT 7 cut(s) 70, 151, 328, 411, 791, 814, 980
SseBI AGGCCT 1 cut(s) 470
SsiI CCGC 3 cut(s) 380, 386, 404
SspMI CTAG 5 cut(s) 180, 189, 366, 594, 857
SstI GAGCTC 1 cut(s) 507
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 3 cut(s) 735, 782, 783
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 2 cut(s) 92, 880
TaiI ACGT 2 cut(s) 210, 969
TasI AATT 7 cut(s) 70, 151, 328, 411, 791, 814, 980
TatI WGTACW 1 cut(s) 596
TauI GCSGC 3 cut(s) 383, 389, 407
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TseI GCWGC 5 cut(s) 167, 199, 383, 407, 860
TspDTI ATGAA 5 cut(s) 287, 451, 513, 537, 892
TspGWI ACGGA 2 cut(s) 562, 777
TspMI CCCGGG 1 cut(s) 783
VpaK11BI GGWCC 1 cut(s) 994
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 380, 426
XmaI CCCGGG 1 cut(s) 783
XspI CTAG 5 cut(s) 180, 189, 366, 594, 857
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.