Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Reverse (-)

12939168 .. 12942463

Gene Structure 3296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGAGTGAGAGATGGTTTAGGGTTTCTAAAGTGAGAGAGATAGAGAAGATGGAGGGTGGGAGTAATAATTGTAATAGTAAGTATTACAGTCATGGTGTGATGGGATCTGGGTCTTCTTCTGGGATGTTGATGCCTCCTCCTCTTGTGAATTCTTATGCTACTGCTGCAGATCAAACTAGTAGTTCTAGTAACCAGCAGCACTACTTTGTTTCACTGCCTTTTACCAACATCAACCCAAACCAAAATGATAGTCAGGATTATGAGATGAGTATGAAAGCTAAGATCATGGGTCATTCTCTCTTCCCTCGCCTCTTGGCCTCTTATGTCAATTGTCAAAAGGTTGGGGCACCTGCTGAAGTGGTGGCTAGGTTAGAGCATGCGGCTGCGGCCTCAATATCTTATGCGGCTGCAATTTCTGAAGCATGTGAAGAATCAGAACCAGACCCAGAGCTAGATCAGTTCATGGAGGCCTATTGTGAGATGCTTGCTAAGTACCATGAAGAGCTCACAAAGCCCTTCCATGAAGCCATGCTTGGCCTCTCTAAAATCAACTCCCAGCTCAAAGCTCTATCCGTTTCACCATCATATTCTGCTAGAACTGGTGATCTTGTTAGACAAAGTGGATCGTTAGAAGAGGCTGATGTGAATGAGAGTGGCATAGATCCAAGAGCCGAAGATTGGGATATTAAAGCTAAGCTTCTGCAAAAATATGGTGGATGTCTTGACAGTCTCAGCCAGGAGTTGAAGCAGAAGAAAAAAAAACGGAAAGTTGCCCAAGGAAGCCCGGGTTCAATTGCAAGAATGGTGGAGCAGAAATTACACATGGCCCTATCCATCGGAGCCTCAAAAGCTAGGACTAGCAGCATCTACAGGTCTGACTGTGAAGCAGATAAACAACTGGTTCATAAACCAAAGGAAACGCCATTGGAAGCCGTCTTCAGAGGGTATGCAACTTGCTATGGTGGATCATCCCCAATTCTACTATATGGACCATCTCATCTGCAATCCTTTACCTATGGATTGCACATCTACTCCTTTGGTTTGATTGATCATATGTACGGAACATACCCTAGCTGGCTGATTATTGTAGGGCTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

367

Amino Acids

40.49

Weight (kDa)

6.28

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KNOX1	PF03790	92 - 131	6.2e-18	KNOX1 domain
KNOX2	PF03791	148 - 191	4.6e-20	KNOX2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	349
AciI	CCGC	3 cut(s)	383, 389, 407
AclWI	GGATC	4 cut(s)	115, 634, 659, 976
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	3 cut(s)	378, 441, 925
AfaI	GTAC	2 cut(s)	497, 1061
AfiI	CCNNNNNNNGG	1 cut(s)	681
AgsI	TTSAA	2 cut(s)	748, 795
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	738
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	9 cut(s)	281, 454, 508, 562, 569, 695, 700, 854, 1077
AluI	AGCT	9 cut(s)	281, 454, 508, 562, 569, 695, 700, 854, 1077
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	4 cut(s)	115, 634, 659, 976
Ama87I	CYCGRG	1 cut(s)	787
AoxI	GGCC	5 cut(s)	318, 390, 471, 538, 828
ApeKI	GCWGC	5 cut(s)	167, 199, 386, 410, 864
ApoI	RAATTY	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	238, 270
AspS9I	GGNCC	2 cut(s)	829, 992
AsuC2I	CCSGG	2 cut(s)	788, 789
AsuHPI	GGTGA	2 cut(s)	573, 617
AvaI	CYCGRG	1 cut(s)	787
AvaII	GGWCC	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	2 cut(s)	108, 931
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	5 cut(s)	154, 211, 373, 397, 876
BccI	CCATC	6 cut(s)	9, 46, 97, 592, 845, 1003
BceAI	ACGGC	1 cut(s)	920
BciT130I	CCWGG	1 cut(s)	740
BclI	TGATCA	1 cut(s)	1051
BcnI	CCSGG	2 cut(s)	788, 789
BcoDI	GTCTC	1 cut(s)	737
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	8 cut(s)	180, 189, 369, 455, 597, 855, 861, 1074
BfmI	CTRYAG	2 cut(s)	168, 871
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	8 cut(s)	168, 200, 384, 387, 390, 408, 411, 865
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	8 cut(s)	169, 201, 385, 388, 391, 409, 412, 866
Bme1390I	CCNGG	3 cut(s)	740, 788, 789
Bme18I	GGWCC	1 cut(s)	992
BmeT110I	CYCGRG	1 cut(s)	787
BmgT120I	GGNCC	2 cut(s)	829, 992
BmiI	GGNNCC	2 cut(s)	351, 844
BmrFI	CCNGG	3 cut(s)	740, 788, 789
BmsI	GCATC	3 cut(s)	123, 474, 876
BpiI	GAAGAC	2 cut(s)	108, 931
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuMI	CCSGG	2 cut(s)	788, 789
BsaJI	CCNNGG	2 cut(s)	778, 787
BsaXI	ACNNNNNCTCC	2 cut(s)	1019, 1049
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
Bse1I	ACTGG	2 cut(s)	607, 906
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	2 cut(s)	778, 787
BseGI	GGATG	3 cut(s)	132, 725, 971
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	748
BseNI	ACTGG	2 cut(s)	607, 906
BseRI	GAGGAG	2 cut(s)	129, 132
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	5 cut(s)	154, 211, 373, 397, 876
BseYI	CCCAGC	1 cut(s)	558
BshFI	GGCC	5 cut(s)	320, 392, 473, 540, 830
BshNI	GGYRCC	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	510
BsiHKCI	CYCGRG	1 cut(s)	787
BsiSI	CCGG	1 cut(s)	788
BslI	CCNNNNNNNGG	1 cut(s)	681
BsmAI	GTCTC	1 cut(s)	737
BsnI	GGCC	5 cut(s)	320, 392, 473, 540, 830
BsoBI	CYCGRG	1 cut(s)	787
Bsp1286I	GDGCHC	2 cut(s)	352, 510
Bsp143I	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	3 cut(s)	383, 389, 407
BspANI	GGCC	5 cut(s)	320, 392, 473, 540, 830
BspCNI	CTCAG	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	351, 844
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	4 cut(s)	115, 634, 659, 976
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	607, 906
BssECI	CCNNGG	2 cut(s)	778, 787
BssMI	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
BssT1I	CCWWGG	1 cut(s)	778
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	3 cut(s)	92, 731, 884
Bst6I	CTCTTC	3 cut(s)	308, 498, 630
BstC8I	GCNNGC	3 cut(s)	381, 489, 1079
BstDEI	CTNAG	4 cut(s)	282, 492, 696, 734
BstF5I	GGATG	3 cut(s)	132, 725, 971
BstKTI	GATC	9 cut(s)	110, 175, 288, 460, 610, 629, 667, 971, 1054
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 389, 514, 851
BstNI	CCWGG	1 cut(s)	740
BstNSI	RCATGY	2 cut(s)	383, 429
BstSCI	CCNGG	3 cut(s)	738, 786, 787
BstSFI	CTRYAG	2 cut(s)	168, 871
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	5 cut(s)	154, 211, 373, 397, 876
BstV2I	GAAGAC	2 cut(s)	108, 931
BstX2I	RGATCY	2 cut(s)	107, 664
BstYI	RGATCY	2 cut(s)	107, 664
BsuRI	GGCC	5 cut(s)	320, 392, 473, 540, 830
BtsCI	GGATG	3 cut(s)	132, 725, 971
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	381, 489, 1079
Cfr13I	GGNCC	2 cut(s)	829, 992
Cfr9I	CCCGGG	1 cut(s)	787
Csp6I	GTAC	2 cut(s)	496, 1060
CspCI	CAANNNNNGTGG	2 cut(s)	789, 824
CviAII	CATG	9 cut(s)	95, 289, 380, 426, 466, 500, 524, 532, 826
CviQI	GTAC	2 cut(s)	496, 1060
DdeI	CTNAG	4 cut(s)	282, 492, 696, 734
DpnI	GATC	9 cut(s)	109, 174, 287, 459, 609, 628, 666, 970, 1053
DpnII	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
Eam1104I	CTCTTC	3 cut(s)	308, 498, 630
EarI	CTCTTC	3 cut(s)	308, 498, 630
Ecl136II	GAGCTC	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	778
Eco147I	AGGCCT	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	992
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	3 cut(s)	378, 441, 925
Eco88I	CYCGRG	1 cut(s)	787
EcoICRI	GAGCTC	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	778
FaeI	CATG	9 cut(s)	98, 292, 383, 429, 469, 503, 527, 535, 829
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 684, 716
FatI	CATG	9 cut(s)	94, 288, 379, 425, 465, 499, 523, 531, 825
FauNDI	CATATG	1 cut(s)	1056
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	8 cut(s)	168, 200, 384, 387, 390, 408, 411, 865
FokI	GGATG	3 cut(s)	139, 732, 958
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	8 cut(s)	168, 200, 384, 387, 390, 408, 411, 865
FspBI	CTAG	8 cut(s)	180, 189, 369, 455, 597, 855, 861, 1074
GluI	GCNGC	8 cut(s)	168, 200, 384, 387, 390, 408, 411, 865
GsaI	CCCAGC	1 cut(s)	562
HaeIII	GGCC	5 cut(s)	320, 392, 473, 540, 830
HapII	CCGG	1 cut(s)	788
Hin1II	CATG	9 cut(s)	98, 292, 383, 429, 469, 503, 527, 535, 829
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	788
HphI	GGTGA	2 cut(s)	573, 617
Hpy188I	TCNGA	5 cut(s)	421, 439, 842, 880, 944
Hpy188III	TCNNGA	2 cut(s)	257, 725
HpyAV	CCTTC	1 cut(s)	529
HpyCH4III	ACNGT	3 cut(s)	92, 731, 884
HpyCH4V	TGCA	7 cut(s)	170, 413, 706, 800, 953, 1006, 1027
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 389, 514, 851
HpyF3I	CTNAG	4 cut(s)	282, 492, 696, 734
Hsp92II	CATG	9 cut(s)	98, 292, 383, 429, 469, 503, 527, 535, 829
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	811, 842
Lsp1109I	GCAGC	5 cut(s)	154, 211, 373, 397, 876
LweI	GCATC	3 cut(s)	123, 474, 876
MaeI	CTAG	8 cut(s)	180, 189, 369, 455, 597, 855, 861, 1074
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	9 cut(s)	109, 174, 287, 459, 609, 628, 666, 970, 1053
MboI	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
MfeI	CAATTG	2 cut(s)	331, 795
MflI	RGATCY	2 cut(s)	107, 664
MhlI	GDGCHC	2 cut(s)	352, 510
MluCI	AATT	7 cut(s)	70, 151, 331, 414, 795, 818, 978
MseI	TTAA	1 cut(s)	690
MspI	CCGG	1 cut(s)	788
MspR9I	CCNGG	3 cut(s)	740, 788, 789
MunI	CAATTG	2 cut(s)	331, 795
MvaI	CCWGG	1 cut(s)	740
MwoI	GCNNNNNNNGC	4 cut(s)	167, 389, 514, 851
NciI	CCSGG	2 cut(s)	788, 789
NdeI	CATATG	1 cut(s)	1056
NdeII	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
NlaIII	CATG	9 cut(s)	98, 292, 383, 429, 469, 503, 527, 535, 829
NlaIV	GGNNCC	2 cut(s)	351, 844
NspI	RCATGY	2 cut(s)	383, 429
PaeI	GCATGC	1 cut(s)	383
PaqCI	CACCTGC	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	8 cut(s)	169, 201, 385, 388, 391, 409, 412, 866
Psp124BI	GAGCTC	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	738
PspFI	CCCAGC	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	2 cut(s)	351, 844
PspPI	GGNCC	2 cut(s)	829, 992
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	107, 664
RsaI	GTAC	2 cut(s)	497, 1061
RsaNI	GTAC	2 cut(s)	496, 1060
SacI	GAGCTC	1 cut(s)	510
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	8 cut(s)	168, 200, 384, 387, 390, 408, 411, 865
Sau3AI	GATC	9 cut(s)	107, 172, 285, 457, 607, 626, 664, 968, 1051
Sau96I	GGNCC	2 cut(s)	829, 992
ScrFI	CCNGG	3 cut(s)	740, 788, 789
SduI	GDGCHC	2 cut(s)	352, 510
SfaNI	GCATC	3 cut(s)	123, 474, 876
SfcI	CTRYAG	2 cut(s)	168, 871
SinI	GGWCC	1 cut(s)	992
SmaI	CCCGGG	1 cut(s)	789
SpeI	ACTAGT	1 cut(s)	179
SphI	GCATGC	1 cut(s)	383
Sse9I	AATT	7 cut(s)	70, 151, 331, 414, 795, 818, 978
SseBI	AGGCCT	1 cut(s)	473
SsiI	CCGC	3 cut(s)	383, 389, 407
SspMI	CTAG	8 cut(s)	180, 189, 369, 455, 597, 855, 861, 1074
SstI	GAGCTC	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	473
StyD4I	CCNGG	3 cut(s)	738, 786, 787
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	3 cut(s)	92, 731, 884
TasI	AATT	7 cut(s)	70, 151, 331, 414, 795, 818, 978
TauI	GCSGC	3 cut(s)	386, 392, 410
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	5 cut(s)	167, 199, 386, 410, 864
TspDTI	ATGAA	5 cut(s)	290, 454, 516, 540, 896
TspGWI	ACGGA	3 cut(s)	565, 781, 1077
TspMI	CCCGGG	1 cut(s)	787
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	992
XapI	RAATTY	1 cut(s)	151
XceI	RCATGY	2 cut(s)	383, 429
XmaI	CCCGGG	1 cut(s)	787
XspI	CTAG	8 cut(s)	180, 189, 369, 455, 597, 855, 861, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.