Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002529

Physical Location & Seq

Genomic Coordinates Reverse (-)

36731509 .. 36734357

Gene Structure 2849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1276200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGTTGAAGATGCTGCAGGAGTTCAAACTCGTCGATTCGGTGAAGTCTGAGATCGGATCTGAGATTCTGAGGAAGCACCATCGTCTTCACTGTTCCTCAGATCAATTGTATAAGGAGCTAGCTGTAGAGTTTTATGATAAGCATGGAGCTAGTACTAGTGGTGGCAATTTTGTTGGACTAGATAGATCTCCAGAAGAGGCTAATGCGATCAATGACATAGATCCTCAAGCTGAAGATAGAGAACTCAAAGTTCAGCTTTCGCACAAATGCAGTGGATATTTGGGCACTCTGAAGCAGGAGTTTATGAAGAAGAAAAAGAATGGAAAATTGCCAAAGGAAGCATGGCATCAGTTGCTTGACTGGTGGTGCAGACATTACAAGTCGCCCTATCCATTGGAGGCTCAGAAGCTAGCACTGGCAGAATCAACTGGTTTGGAACTTAAACAGATAAATAATTGGTTCATCAACCAAAGGAAACGCCATTGGAAACCTTCAGAAGACATGCAATTTGTTTTGATGGACCCAACTCTTCATCAACACCATCACTATCCCCACTTCTGTATGGACAATGCAATCTGCAATCCCTTCTCCATGGATTGCACATCTACTCTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04550 ko05202 map04550 map05202

Pfam Domains

Protein Families

ELK Homeobox_KN KNOX1 KNOX2

Protein Analysis

207

Amino Acids

24.08

Weight (kDa)

6.89

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeobox_KN	PF05920	122 - 161	5e-17	Homeobox KN domain
Homeodomain	PF00046	128 - 162	6.1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62360
fragaria_vesca	FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_3g01400 FvH4_6g42570 FvH4_6g42570
malus_domestica	MD05G1352500.v1.1 MD09G1112500.v1.1 MD10G1276200.v1.1 MD10G1326500.v1.1 MD17G1102600.v1.1
prunus_persica	Prupe.3G212100_v2.0.a1 Prupe.4G015200_v2.0.a1 Prupe.4G015200_v2.0.a1
pyrus_communis	pycom05g31940 pycom09g03690 pycom10g27650 pycom17g09700
rosa_chinensis	RchiOBHm_Chr2g0158421 RchiOBHm_Chr5g0002121
rosa_laevigata	RLG00000021086 RLG00000030997
rosa_multiflora	Rmu_sc0004855.1_g000009 Rmu_ssc0000001.1_g000013
rosa_roxburghii	Rroxscaffold_1G00073790 Rroxscaffold_2G00091400
rosa_rugosa	Rorug02G0468500 Rorug02G0468600 Rorug04G0394500 Rorug04G0394500
rosa_samantha	Rh2AG534700 Rh2BG548100 Rh2CG518500 Rh2DG557700 Rh5AG016200 Rh5BG019600 Rh5CG017500 Rh5DG017700
rosa_wichuraiana	Rw2G044280 Rw5G001580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	67, 218
AcuI	CTGAAG	3 cut(s)	255, 314, 480
AfaI	GTAC	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	10, 28
AhlI	ACTAGT	1 cut(s)	158
AluBI	AGCT	6 cut(s)	121, 125, 152, 233, 259, 412
AluI	AGCT	6 cut(s)	121, 125, 152, 233, 259, 412
AlwI	GGATC	2 cut(s)	67, 218
ApeKI	GCWGC	1 cut(s)	16
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	55
AsuNHI	GCTAGC	2 cut(s)	121, 412
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	290
BbsI	GAAGAC	2 cut(s)	80, 507
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	3 cut(s)	90, 514, 552
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	5 cut(s)	122, 153, 159, 182, 413
BfmI	CTRYAG	2 cut(s)	17, 126
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
BmcAI	AGTACT	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	525
BmsI	GCATC	2 cut(s)	3, 358
BmtI	GCTAGC	2 cut(s)	125, 416
BpiI	GAAGAC	2 cut(s)	80, 507
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	594
Bse1I	ACTGG	3 cut(s)	368, 423, 436
BseDI	CCNNGG	1 cut(s)	594
BseMII	CTCAG	5 cut(s)	42, 54, 62, 114, 419
BseNI	ACTGG	3 cut(s)	368, 423, 436
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	3
BsgI	GTGCAG	1 cut(s)	391
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
Bsp19I	CCATGG	1 cut(s)	594
BspCNI	CTCAG	5 cut(s)	43, 55, 63, 113, 418
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	21
BspOI	GCTAGC	2 cut(s)	125, 416
BspPI	GGATC	2 cut(s)	67, 218
BsrI	ACTGG	3 cut(s)	368, 423, 436
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	192, 537
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	123, 414
BstDEI	CTNAG	5 cut(s)	51, 63, 71, 100, 405
BstDSI	CCRYGG	1 cut(s)	594
BstKTI	GATC	6 cut(s)	57, 62, 106, 191, 213, 226
BstMBI	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNSI	RCATGY	1 cut(s)	508
BstSFI	CTRYAG	2 cut(s)	17, 126
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	2 cut(s)	80, 507
BstX2I	RGATCY	3 cut(s)	59, 188, 223
BstYI	RGATCY	3 cut(s)	59, 188, 223
BtgI	CCRYGG	1 cut(s)	594
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	3 cut(s)	91, 280, 416
Cac8I	GCNNGC	2 cut(s)	123, 414
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	156
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	4 cut(s)	146, 345, 505, 595
CviJI	RGCY	8 cut(s)	121, 125, 152, 203, 233, 259, 404, 412
CviKI_1	RGCY	8 cut(s)	121, 125, 152, 203, 233, 259, 404, 412
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	5 cut(s)	51, 63, 71, 100, 405
DpnI	GATC	6 cut(s)	56, 61, 105, 190, 212, 225
DpnII	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
Eam1104I	CTCTTC	2 cut(s)	192, 537
EarI	CTCTTC	2 cut(s)	192, 537
Eco130I	CCWWGG	1 cut(s)	594
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	3 cut(s)	255, 314, 480
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	4 cut(s)	149, 348, 508, 598
FaiI	YATR	9 cut(s)	114, 138, 147, 221, 308, 346, 506, 566, 596
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	4 cut(s)	145, 344, 504, 594
Fnu4HI	GCNGC	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	5 cut(s)	122, 153, 159, 182, 413
GluI	GCNGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	177
Hin1II	CATG	4 cut(s)	149, 348, 508, 598
HinfI	GANTC	3 cut(s)	38, 67, 425
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	8 cut(s)	52, 59, 64, 72, 103, 294, 408, 499
Hpy188III	TCNNGA	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	504, 598
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	7 cut(s)	19, 273, 372, 508, 575, 582, 603
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	5 cut(s)	51, 63, 71, 100, 405
Hsp92II	CATG	4 cut(s)	149, 348, 508, 598
Kzo9I	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
LmnI	GCTCC	2 cut(s)	118, 149
LpnPI	CCDG	6 cut(s)	5, 207, 284, 349, 404, 417
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	2 cut(s)	3, 358
MaeI	CTAG	5 cut(s)	122, 153, 159, 182, 413
MalI	GATC	6 cut(s)	56, 61, 105, 190, 212, 225
MboI	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
MboII	GAAGA	8 cut(s)	22, 80, 209, 248, 322, 325, 512, 524
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	3 cut(s)	59, 188, 223
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	5 cut(s)	107, 169, 329, 457, 509
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	5 cut(s)	66, 109, 193, 237, 394
MseI	TTAA	1 cut(s)	444
MunI	CAATTG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
NheI	GCTAGC	2 cut(s)	121, 412
NlaIII	CATG	4 cut(s)	149, 348, 508, 598
NlaIV	GGNNCC	1 cut(s)	525
NspI	RCATGY	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	38, 67, 425
PkrI	GCNGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	21
PsuI	RGATCY	3 cut(s)	59, 188, 223
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	6 cut(s)	54, 59, 103, 188, 210, 223
Sau96I	GGNCC	1 cut(s)	523
ScaI	AGTACT	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	7 cut(s)	123, 127, 154, 235, 261, 414, 496
SfaNI	GCATC	2 cut(s)	3, 358
SfcI	CTRYAG	2 cut(s)	17, 126
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	5 cut(s)	107, 169, 329, 457, 509
SspMI	CTAG	5 cut(s)	122, 153, 159, 182, 413
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	36
TasI	AATT	5 cut(s)	107, 169, 329, 457, 509
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	38, 67, 425
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	3 cut(s)	98, 280, 423
TseI	GCWGC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	323, 454, 524
TspRI	CASTG	3 cut(s)	98, 280, 423
VpaK11BI	GGWCC	1 cut(s)	523
XceI	RCATGY	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XspI	CTAG	5 cut(s)	122, 153, 159, 182, 413
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.