Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Forward (+)

23417441 .. 23419045

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAATACCATCTATACCTTTATTACCTATCTTTCTCGATTTTCCAACCAAACAACAACAATGGAGAACCATCTTCAACATTCCTTAACCATCATTCCTAAACCGGATCTAATCAAAGAAGAACAACGTTATCACGAAGATACGGTGAGCTTGCAAGCGGAGAGGATTTTGCATGCCATGACCTTCCCCATGGTTCTCAAAACTGCTTTGGAGCTTGGCGTTATCGACATGATCACTTCTGTAGATGACGGCGTGTGGCTCTCGCCTTCTGAGATCGCTCTTGGTCTCCCAACCAAGCCCACCAATCCGGAGGCACCAGTATTGCTGGACCGGATGCTAGTTTTGTTAGCCAGCCACTCAATCTTGAAGTACCGTACGGTAGAAACCGGAGATAACATTGGAAGTAGAAAGACCGAGAGGGTCTATGCAGCTGAACCGGTTTGCACGTTTTTCTTGAACCGCGGAGATGGCTTGGGCTCTCTCGCCACTTTGTTCATGGTACTCCAAGGGGAAGTCTGTATGAAGCCTTGGGAACATCTCAAAGACATGATATTAGAAGGAAAAGATGCATTCACCTCTGCTCATGGCATGAGGTTTTTCGAACTCATTGGTTCGAACGAACAATTCGCTGAAATGTTTAACCGGGCAATGTCGGAAGCTTCCACATTGATTATGAAGAAGGTTTTAGAAGTTTACAAAGGATTCGAAGATGTAAATACTTTGGTGGATGTGGGAGGAGGAATTGGAACAATCATAGGTCAAGTGACTTCCAAGTATCCTCATATTAAAGGCATCAATTTCGATCTAGCATCGGTTTTAGCCCATGCTCCTTTTAATAAAGGAGTGGAGCATGTTTCAGGAGATATGTTTAAAGAAATTCCAAAAGGAGATGCCATCTTCATGAAAGTAAGTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

306

Amino Acids

34.15

Weight (kDa)

5.82

Isoelectric Point (pI)

28.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	56 - 153	1.1e-13	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	177 - 277	3e-28	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AccII	CGCG	1 cut(s)	462
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	3 cut(s)	158, 460, 462
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	876
AfaI	GTAC	3 cut(s)	371, 376, 501
AgeI	ACCGGT	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	77, 367, 457
AluBI	AGCT	4 cut(s)	150, 214, 431, 659
AluI	AGCT	4 cut(s)	150, 214, 431, 659
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	114
Aor13HI	TCCGGA	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	876
AsiGI	ACCGGT	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	644
AsuHPI	GGTGA	2 cut(s)	157, 565
AsuII	TTCGAA	3 cut(s)	600, 614, 705
AvaII	GGWCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	5 cut(s)	17, 78, 98, 461, 902
BceAI	ACGGC	1 cut(s)	265
BcgI	CGANNNNNNTGC	2 cut(s)	781, 815
BciVI	GTATCC	1 cut(s)	786
BclI	TGATCA	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	644
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	2 cut(s)	338, 806
BfmI	CTRYAG	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	786
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	644
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	5 cut(s)	324, 556, 801, 818, 880
Bpu14I	TTCGAA	3 cut(s)	600, 614, 705
BpuMI	CCSGG	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	4 cut(s)	189, 460, 505, 527
BsaWI	WCCGGW	5 cut(s)	103, 307, 330, 386, 436
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	654
BseAI	TCCGGA	1 cut(s)	307
BseDI	CCNNGG	4 cut(s)	189, 460, 505, 527
BseGI	GGATG	2 cut(s)	339, 733
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	462
BshNI	GGYRCC	1 cut(s)	313
BshTI	ACCGGT	1 cut(s)	436
BsiSI	CCGG	6 cut(s)	104, 308, 331, 387, 437, 643
BsiWI	CGTACG	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	569
Bso31I	GGTCTC	1 cut(s)	290
Bsp119I	TTCGAA	3 cut(s)	600, 614, 705
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	106, 231, 273, 802
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	3 cut(s)	158, 460, 462
BspCNI	CTCAG	1 cut(s)	262
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	900
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	114
BspT104I	TTCGAA	3 cut(s)	600, 614, 705
BspT107I	GGYRCC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	4 cut(s)	189, 460, 505, 527
BssMI	GATC	4 cut(s)	106, 231, 273, 802
BssT1I	CCWWGG	3 cut(s)	189, 505, 527
Bst4CI	ACNGT	3 cut(s)	145, 374, 379
BstBI	TTCGAA	3 cut(s)	600, 614, 705
BstC8I	GCNNGC	4 cut(s)	152, 156, 174, 352
BstDEI	CTNAG	1 cut(s)	270
BstDSI	CCRYGG	2 cut(s)	189, 460
BstF5I	GGATG	2 cut(s)	339, 733
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	4 cut(s)	109, 234, 276, 805
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	4 cut(s)	106, 231, 273, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNSI	RCATGY	2 cut(s)	176, 854
BstSCI	CCNGG	1 cut(s)	642
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	786
BtgI	CCRYGG	2 cut(s)	189, 460
BtsCI	GGATG	2 cut(s)	339, 733
Cac8I	GCNNGC	4 cut(s)	152, 156, 174, 352
CciI	TCATGA	1 cut(s)	900
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	328
Cfr42I	CCGCGG	1 cut(s)	463
Csp6I	GTAC	3 cut(s)	370, 375, 500
CspAI	ACCGGT	1 cut(s)	436
CviQI	GTAC	3 cut(s)	370, 375, 500
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	108, 233, 275, 804
DpnII	GATC	4 cut(s)	106, 231, 273, 802
DraI	TTTAAA	1 cut(s)	871
Eco130I	CCWWGG	3 cut(s)	189, 505, 527
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	328
EcoT14I	CCWWGG	3 cut(s)	189, 505, 527
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	3 cut(s)	189, 505, 527
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	346, 740
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	338, 806
GluI	GCNGC	1 cut(s)	429
HapII	CCGG	6 cut(s)	104, 308, 331, 387, 437, 643
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	1 cut(s)	702
HpaII	CCGG	6 cut(s)	104, 308, 331, 387, 437, 643
HphI	GGTGA	2 cut(s)	157, 565
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	2 cut(s)	271, 655
Hpy188III	TCNNGA	7 cut(s)	36, 134, 308, 364, 454, 858, 901
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	4 cut(s)	193, 276, 551, 673
HpyCH4III	ACNGT	3 cut(s)	145, 374, 379
HpyCH4IV	ACGT	2 cut(s)	127, 446
HpyCH4V	TGCA	5 cut(s)	154, 172, 428, 444, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	1 cut(s)	270
HpySE526I	ACGT	2 cut(s)	127, 446
Kpn2I	TCCGGA	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	231
KspI	CCGCGG	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	106, 231, 273, 802
LmnI	GCTCC	3 cut(s)	211, 832, 847
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	5 cut(s)	324, 556, 801, 818, 880
MaeI	CTAG	2 cut(s)	338, 806
MaeII	ACGT	2 cut(s)	127, 446
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	4 cut(s)	108, 233, 275, 804
MboI	GATC	4 cut(s)	106, 231, 273, 802
MboII	GAAGA	6 cut(s)	65, 131, 149, 688, 719, 889
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	4 cut(s)	623, 741, 796, 876
MmeI	TCCRAC	2 cut(s)	69, 633
MnlI	CCTC	8 cut(s)	156, 304, 411, 585, 586, 728, 731, 789
Mph1103I	ATGCAT	1 cut(s)	571
MroI	TCCGGA	1 cut(s)	307
MseI	TTAA	5 cut(s)	86, 639, 786, 834, 870
MslI	CAYNNNNRTG	1 cut(s)	899
MspA1I	CMGCKG	2 cut(s)	431, 462
MspI	CCGG	6 cut(s)	104, 308, 331, 387, 437, 643
MspR9I	CCNGG	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	569
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	468
NciI	CCSGG	1 cut(s)	644
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	106, 231, 273, 802
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	2 cut(s)	176, 854
NspV	TTCGAA	3 cut(s)	600, 614, 705
PaeI	GCATGC	1 cut(s)	176
PagI	TCATGA	1 cut(s)	900
PctI	GAATGC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	702
Pfl23II	CGTACG	1 cut(s)	374
PinAI	ACCGGT	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	430
Psp1406I	AACGTT	1 cut(s)	127
PspLI	CGTACG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	3 cut(s)	371, 376, 501
RsaNI	GTAC	3 cut(s)	370, 375, 500
RseI	CAYNNNNRTG	1 cut(s)	899
SacII	CCGCGG	1 cut(s)	463
SaqAI	TTAA	5 cut(s)	86, 639, 786, 834, 870
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	4 cut(s)	106, 231, 273, 802
Sau96I	GGNCC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	644
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	5 cut(s)	324, 556, 801, 818, 880
SfcI	CTRYAG	1 cut(s)	240
Sfr303I	CCGCGG	1 cut(s)	463
SfuI	TTCGAA	3 cut(s)	600, 614, 705
SgrBI	CCGCGG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	899
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	4 cut(s)	623, 741, 796, 876
SsiI	CCGC	3 cut(s)	158, 460, 462
SspMI	CTAG	2 cut(s)	338, 806
StyD4I	CCNGG	1 cut(s)	642
StyI	CCWWGG	3 cut(s)	189, 505, 527
TaaI	ACNGT	3 cut(s)	145, 374, 379
TaiI	ACGT	2 cut(s)	130, 449
TaqI	TCGA	6 cut(s)	37, 225, 600, 614, 705, 801
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	623, 741, 796, 876
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	5 cut(s)	86, 639, 786, 834, 870
Tru9I	TTAA	5 cut(s)	86, 639, 786, 834, 870
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	6 cut(s)	17, 484, 536, 689, 889, 917
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	876
XceI	RCATGY	2 cut(s)	176, 854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XspI	CTAG	2 cut(s)	338, 806
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.