Rh6CG383200
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005581
Physical Location & Seq
Reverse (-)
56981385 .. 56983497
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG383200.1

Sequence Viewer

Length: 813 bp
ATGAGGAGCACAAGTCCCCAGACAATTGACTCAACTCCAATGTCTCATCCGCAGCAAGAAGAAGAAGAGGAACTGGGCAAACAAGCCATACGTTTAGCCAATGTCGTAATCCTTCCGATGGTTCTGAAGTCAGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGCGAGTCACTCTCACCGTCCGACATTGCGGCTCAGCTCCCCACCAAGAACTCCAACGCCCCGGCTGTTCTGGACCGGATGCTTAGGCTCTTGGCCAGCCACTCTATACTCAAATGCTCGGCCCGGACCGGATCAGATGGGCAGGTAGAGAGGTTGTATAGTGCAGGACCCATTTGCAAATTCCTTGTCAAGGATCAAAATGGAGGAACCAGGTCCGTTGGCCCTCTGTTTCTCTTGCACCATGATAAGGTTTTCATGGAAAGCTGGTTCCATTTGAATGATGCTATATTGGAAGGGGGAATTCCTTTTAATAGGGCCTATGGTATGACAGCATTTGAGTACCCAGAAACAGATGAGAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACCACATTGATCTTGAAGAAGATACTCGATGTTTATAGAGGGTTTGAGGGGATCAATGTGCTGGTTGATGTGGGAGGTGGAATTGGTGTTACTCTTAATCTCATCACCAACAAGTACCCGCACATTAAGGGCATCAATTTTGATTTGCCACACGTCCTAGCTGATGCTCCTTCTTATCCAGTGGGAGAAATGGTTTTGGTTTTGTGTAGGTGTGGAGCATGTTGGGGGGGACATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

270

Amino Acids

29.58

Weight (kDa)

5.84

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 31 - 124 7.8e-19 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 148 - 250 1.3e-31 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AciI CCGC 3 cut(s) 50, 206, 692
AclWI GGATC 3 cut(s) 316, 378, 632
AcoI YGGCCR 1 cut(s) 270
AcsI RAATTY 2 cut(s) 356, 477
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 2 cut(s) 518, 689
AfiI CCNNNNNNNGG 3 cut(s) 118, 367, 424
AflIII ACRYGT 2 cut(s) 724, 805
AgsI TTSAA 5 cut(s) 140, 454, 541, 553, 589
AhdI GACNNNNNGTC 1 cut(s) 181
AjiI CACGTC 1 cut(s) 727
AjnI CCWGG 2 cut(s) 386, 555
AloI GAACNNNNNNTCC 2 cut(s) 428, 460
AluBI AGCT 4 cut(s) 134, 214, 441, 734
AluI AGCT 4 cut(s) 134, 214, 441, 734
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 3 cut(s) 316, 378, 632
AoxI GGCC 5 cut(s) 270, 297, 397, 492, 558
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 356, 477
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspS9I GGNCC 7 cut(s) 250, 298, 303, 344, 390, 398, 492
AsuC2I CCSGG 2 cut(s) 239, 301
AsuHPI GGTGA 2 cut(s) 183, 670
AvaII GGWCC 4 cut(s) 250, 303, 344, 390
BalI TGGCCA 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 112, 308
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 2 cut(s) 388, 557
BcnI CCSGG 2 cut(s) 239, 301
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 731
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 53, 207
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 2 cut(s) 54, 208
Bme1390I CCNGG 4 cut(s) 239, 301, 388, 557
Bme18I GGWCC 4 cut(s) 250, 303, 344, 390
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 7 cut(s) 250, 298, 303, 344, 390, 398, 492
BmiI GGNNCC 3 cut(s) 346, 385, 446
BmrFI CCNGG 4 cut(s) 239, 301, 388, 557
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 4 cut(s) 246, 448, 714, 727
BmuI ACTGGG 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 173, 205
Bpu10I CCTNAGC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 239, 301
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 2 cut(s) 252, 305
BsaXI ACNNNNNCTCC 3 cut(s) 28, 750, 780
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 367, 424
Bse1I ACTGG 2 cut(s) 78, 752
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 2 cut(s) 388, 557
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 46, 261
BseLI CCNNNNNNNGG 3 cut(s) 118, 367, 424
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 2 cut(s) 78, 752
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 64
BsgI GTGCAG 2 cut(s) 189, 360
BshFI GGCC 5 cut(s) 272, 299, 399, 494, 560
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 4 cut(s) 239, 253, 301, 306
BslI CCNNNNNNNGG 3 cut(s) 118, 367, 424
BsmAI GTCTC 1 cut(s) 48
BsnI GGCC 5 cut(s) 272, 299, 399, 494, 560
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 4 cut(s) 308, 370, 582, 624
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 3 cut(s) 50, 206, 692
BspANI GGCC 5 cut(s) 272, 299, 399, 494, 560
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 3 cut(s) 346, 385, 446
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 3 cut(s) 316, 378, 632
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 2 cut(s) 78, 752
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 4 cut(s) 308, 370, 582, 624
Bst2UI CCWGG 2 cut(s) 388, 557
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 172, 274
BstDEI CTNAG 2 cut(s) 210, 260
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 2 cut(s) 46, 261
BstKTI GATC 4 cut(s) 311, 373, 585, 627
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 4 cut(s) 308, 370, 582, 624
BstNI CCWGG 2 cut(s) 388, 557
BstNSI RCATGY 2 cut(s) 795, 809
BstSCI CCNGG 4 cut(s) 237, 299, 386, 555
BstV1I GCAGC 1 cut(s) 64
BsuRI GGCC 5 cut(s) 272, 299, 399, 494, 560
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 2 cut(s) 46, 261
BtsIMutI CAGTG 1 cut(s) 759
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 172, 274
Cfr13I GGNCC 7 cut(s) 250, 298, 303, 344, 390, 398, 492
CpoI CGGWCCG 1 cut(s) 303
CsiI ACCWGGT 1 cut(s) 386
Csp6I GTAC 2 cut(s) 517, 688
CspI CGGWCCG 1 cut(s) 303
CviAII CATG 5 cut(s) 419, 433, 562, 792, 806
CviQI GTAC 2 cut(s) 517, 688
DdeI CTNAG 2 cut(s) 210, 260
DpnI GATC 4 cut(s) 310, 372, 584, 626
DpnII GATC 4 cut(s) 308, 370, 582, 624
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 4 cut(s) 250, 303, 344, 390
Eco57I CTGAAG 1 cut(s) 146
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO109I RGGNCCY 2 cut(s) 344, 492
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 2 cut(s) 386, 555
FaeI CATG 5 cut(s) 422, 436, 565, 795, 809
FatI CATG 5 cut(s) 418, 432, 561, 791, 805
FauI CCCGC 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 53, 207
FokI GGATG 2 cut(s) 33, 268
Fsp4HI GCNGC 2 cut(s) 53, 207
FspBI CTAG 1 cut(s) 731
GluI GCNGC 2 cut(s) 53, 207
HaeIII GGCC 5 cut(s) 272, 299, 399, 494, 560
HapII CCGG 4 cut(s) 239, 253, 301, 306
Hin1II CATG 5 cut(s) 422, 436, 565, 795, 809
HinfI GANTC 2 cut(s) 29, 182
HpaII CCGG 4 cut(s) 239, 253, 301, 306
HphI GGTGA 2 cut(s) 183, 670
Hpy188I TCNGA 4 cut(s) 117, 126, 199, 313
Hpy188III TCNNGA 3 cut(s) 137, 248, 586
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 122, 464, 753
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 3 cut(s) 91, 147, 726
HpyCH4V TGCA 4 cut(s) 170, 341, 354, 415
HpyF3I CTNAG 2 cut(s) 210, 260
HpySE526I ACGT 3 cut(s) 91, 147, 726
Hsp92II CATG 5 cut(s) 422, 436, 565, 795, 809
Kzo9I GATC 4 cut(s) 308, 370, 582, 624
LmnI GCTCC 4 cut(s) 6, 219, 745, 788
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 4 cut(s) 246, 448, 714, 727
MabI ACCWGGT 1 cut(s) 386
MaeI CTAG 1 cut(s) 731
MaeII ACGT 3 cut(s) 91, 147, 726
MaeIII GTNAC 2 cut(s) 183, 661
MalI GATC 4 cut(s) 310, 372, 584, 626
MboI GATC 4 cut(s) 308, 370, 582, 624
MboII GAAGA 5 cut(s) 71, 74, 77, 601, 604
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 5 cut(s) 24, 356, 477, 654, 709
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 2 cut(s) 23, 191
MmeI TCCRAC 2 cut(s) 222, 255
MnlI CCTC 8 cut(s) 61, 321, 374, 411, 528, 605, 613, 641
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 4 cut(s) 486, 669, 699, 811
MslI CAYNNNNRTG 1 cut(s) 453
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 4 cut(s) 239, 253, 301, 306
MspR9I CCNGG 4 cut(s) 239, 301, 388, 557
MunI CAATTG 1 cut(s) 24
MvaI CCWGG 2 cut(s) 388, 557
NciI CCSGG 2 cut(s) 239, 301
NdeII GATC 4 cut(s) 308, 370, 582, 624
NlaIII CATG 5 cut(s) 422, 436, 565, 795, 809
NlaIV GGNNCC 3 cut(s) 346, 385, 446
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 2 cut(s) 795, 809
PciI ACATGT 1 cut(s) 805
PkrI GCNGC 2 cut(s) 54, 208
PleI GAGTC 2 cut(s) 23, 190
PpsI GAGTC 2 cut(s) 23, 190
PpuMI RGGWCCY 1 cut(s) 344
PscI ACATGT 1 cut(s) 805
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 386, 555
PspGI CCWGG 2 cut(s) 386, 555
PspN4I GGNNCC 3 cut(s) 346, 385, 446
PspPI GGNCC 7 cut(s) 250, 298, 303, 344, 390, 398, 492
PspPPI RGGWCCY 1 cut(s) 344
RsaI GTAC 2 cut(s) 518, 689
RsaNI GTAC 2 cut(s) 517, 688
RseI CAYNNNNRTG 1 cut(s) 453
Rsr2I CGGWCCG 1 cut(s) 303
RsrII CGGWCCG 1 cut(s) 303
SaqAI TTAA 4 cut(s) 486, 669, 699, 811
SatI GCNGC 2 cut(s) 53, 207
Sau3AI GATC 4 cut(s) 308, 370, 582, 624
Sau96I GGNCC 7 cut(s) 250, 298, 303, 344, 390, 398, 492
SchI GAGTC 2 cut(s) 23, 191
ScrFI CCNGG 4 cut(s) 239, 301, 388, 557
SduI GDGCHC 1 cut(s) 11
SexAI ACCWGGT 1 cut(s) 386
SfaNI GCATC 4 cut(s) 246, 448, 714, 727
SinI GGWCC 4 cut(s) 250, 303, 344, 390
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 5 cut(s) 24, 356, 477, 654, 709
SsiI CCGC 3 cut(s) 50, 206, 692
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 4 cut(s) 237, 299, 386, 555
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 3 cut(s) 94, 150, 729
TaqI TCGA 1 cut(s) 600
TasI AATT 5 cut(s) 24, 356, 477, 654, 709
TauI GCSGC 1 cut(s) 209
Tru1I TTAA 4 cut(s) 486, 669, 699, 811
Tru9I TTAA 4 cut(s) 486, 669, 699, 811
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 421
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 1 cut(s) 759
VpaK11BI GGWCC 4 cut(s) 250, 303, 344, 390
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 2 cut(s) 356, 477
XceI RCATGY 2 cut(s) 795, 809
XspI CTAG 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.