Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Forward (+)

41087737 .. 41092513

Gene Structure 4777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G494500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAGCAGCAGAATCTCTGAGAAAACCAACGCAAACCCAATGTCTCAGCAACAAGAAGAAGAAAAGGAAGAGGAAGAAGTGGGCAAGTTGGCTATAAGATTAGCCAATGTGGTGATCCTACCAATGGTTCTAAAGTCAGCCATTGAACTCAACATCATAGACATCATCTCCGCTGCAGGGGATGGCAAGTTCCTCTCACCTTCTGAGATTGCGGCTAGCCTTCCCACAAAGAACCCAGACGCCTCGGTTCTGCTGGACCGGATGCTGAGGCTTTTGACAAGCCATTCTATTCTCAAATGCTCGGTTCGAACCGGCCAAGATGGGAAGGTGGAGAGGCTGTATGGTGCTGGAGCTCTATGCAAGTTTCTTGTCAAGGATCAGCATGATGGAGTTGGGTCTGTTGGGCCTTTGCTTCTGCTGCATCATGATAAGGTCTTCATGGAGAGCTGGTGCCACTTCAATGATGCTGTATTAGAAGGCGGAATTCCATTTAACAGGGCTTATGGAATGACAGCCTTTGAGTATCCAGAAACAGATGAGAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACTACCTTAATCTTGAAGAAGATATTTGATGTTTATAAAGGGTTTGAAGGCCTCAATGTGTTGGTCGATGTGGGGGGTGGAATTGGTGTCACTCTCAATTTGATCACCACCAAGTACCCCCGCATTAAGGGCATTAATTTTGATTTGCCCCACGTTTTAGCTGATGCTCCTTCTTATCCAGGTGTGGAGCATGTTGGGGGAGATATGTTTGTAAGTGTTCCACAAGGAGATGCTATATTCATGAAGTGGATACTTCATGATTGGAGTGATGAGCATTGCTTGACACTTCTCAAGAACTGCTGCAAAGCTCTCCCCAGCTCTGGAAAAGTTATCATTGTGGAATCAATTCTTCCCGACATTCCTGACAGTAGCGTTACATCTAACATTGTCTGCGAGCAGGACTTACTCATGCTAACAGTAAACCCTGGAGGGAAAGAGAGGACCAAACATGAATACGAGGACTTAGCAGTAAAATCTGGATTCTCTGGATGTGAAGTCATTTGCAATGCTTACAACAGCTGGATTATGGAGTTCCACAAAAACGCAAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

378

Amino Acids

41.53

Weight (kDa)

5.4

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccB1I	GGYRCC	1 cut(s)	450
AciI	CCGC	4 cut(s)	171, 212, 480, 700
AclWI	GGATC	2 cut(s)	109, 384
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	4 cut(s)	124, 177, 706, 899
AgsI	TTSAA	6 cut(s)	146, 460, 547, 559, 595, 626
AjnI	CCWGG	3 cut(s)	561, 757, 1003
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	6 cut(s)	353, 447, 740, 887, 897, 1098
AluI	AGCT	6 cut(s)	353, 447, 740, 887, 897, 1098
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	109, 384
AoxI	GGCC	4 cut(s)	313, 404, 564, 628
ApeKI	GCWGC	4 cut(s)	6, 173, 418, 879
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AseI	ATTAAT	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	924
AspS9I	GGNCC	3 cut(s)	256, 404, 1020
AsuHPI	GGTGA	3 cut(s)	124, 189, 676
AsuII	TTCGAA	1 cut(s)	307
AsuNHI	GCTAGC	1 cut(s)	215
AvaII	GGWCC	2 cut(s)	256, 1020
BanI	GGYRCC	1 cut(s)	450
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	18, 160, 405, 866
BccI	CCATC	3 cut(s)	176, 314, 380
BciT130I	CCWGG	3 cut(s)	563, 759, 1005
BciVI	GTATCC	2 cut(s)	534, 822
BclI	TGATCA	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	174
BfuI	GTATCC	2 cut(s)	534, 822
BisI	GCNGC	5 cut(s)	7, 174, 213, 419, 880
BlsI	GCNGC	5 cut(s)	8, 175, 214, 420, 881
Bme1390I	CCNGG	3 cut(s)	563, 759, 1005
Bme18I	GGWCC	2 cut(s)	256, 1020
BmgT120I	GGNCC	3 cut(s)	256, 404, 1020
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	3 cut(s)	563, 759, 1005
BmsI	GCATC	5 cut(s)	252, 430, 454, 733, 799
BmtI	GCTAGC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	427
BpmI	CTGGAG	2 cut(s)	369, 1026
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	1 cut(s)	854
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	243, 1003
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 182, 323, 353, 434, 464
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 177, 706, 899
Bse118I	RCCGGY	1 cut(s)	311
Bse3DI	GCAATG	2 cut(s)	853, 1090
BseBI	CCWGG	3 cut(s)	563, 759, 1005
BseDI	CCNNGG	2 cut(s)	243, 1003
BseGI	GGATG	3 cut(s)	187, 267, 1073
BseLI	CCNNNNNNNGG	4 cut(s)	124, 177, 706, 899
BseMI	GCAATG	2 cut(s)	853, 1090
BseMII	CTCAG	4 cut(s)	9, 59, 195, 257
BseXI	GCAGC	4 cut(s)	18, 160, 405, 866
BseYI	CCCAGC	1 cut(s)	893
BshFI	GGCC	4 cut(s)	315, 406, 566, 630
BshNI	GGYRCC	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	2 cut(s)	259, 312
BslI	CCNNNNNNNGG	4 cut(s)	124, 177, 706, 899
BsmAI	GTCTC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	315, 406, 566, 630
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	114, 376, 681
BspACI	CCGC	4 cut(s)	171, 212, 480, 700
BspANI	GGCC	4 cut(s)	315, 406, 566, 630
BspCNI	CTCAG	4 cut(s)	10, 58, 196, 258
BspHI	TCATGA	3 cut(s)	424, 819, 835
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	109, 384
BspT104I	TTCGAA	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	450
BsrDI	GCAATG	2 cut(s)	853, 1090
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	243, 1003
BssMI	GATC	3 cut(s)	114, 376, 681
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	3 cut(s)	563, 759, 1005
Bst4CI	ACNGT	2 cut(s)	947, 997
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	240
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	217, 974
BstDEI	CTNAG	5 cut(s)	18, 45, 204, 266, 1042
BstF5I	GGATG	3 cut(s)	187, 267, 1073
BstKTI	GATC	3 cut(s)	117, 379, 684
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	114, 376, 681
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 708
BstNI	CCWGG	3 cut(s)	563, 759, 1005
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	3 cut(s)	561, 757, 1003
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	18, 160, 405, 866
BstV2I	GAAGAC	1 cut(s)	427
BsuI	GTATCC	2 cut(s)	534, 822
BsuRI	GGCC	4 cut(s)	315, 406, 566, 630
BtsCI	GGATG	3 cut(s)	187, 267, 1073
Cac8I	GCNNGC	2 cut(s)	217, 974
CciI	TCATGA	3 cut(s)	424, 819, 835
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	256, 404, 1020
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	9 cut(s)	383, 425, 439, 568, 770, 820, 836, 988, 1028
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	5 cut(s)	18, 45, 204, 266, 1042
DpnI	GATC	3 cut(s)	116, 378, 683
DpnII	GATC	3 cut(s)	114, 376, 681
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	353
Eco147I	AGGCCT	1 cut(s)	630
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	256, 1020
Eco53kI	GAGCTC	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	3 cut(s)	561, 757, 1003
EcoT38I	GRGCYC	1 cut(s)	355
FaeI	CATG	9 cut(s)	386, 428, 442, 571, 773, 823, 839, 991, 1031
FatI	CATG	9 cut(s)	382, 424, 438, 567, 769, 819, 835, 987, 1027
FauI	CCCGC	1 cut(s)	707
FbaI	TGATCA	1 cut(s)	681
Fnu4HI	GCNGC	5 cut(s)	7, 174, 213, 419, 880
FokI	GGATG	3 cut(s)	194, 274, 1080
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	5 cut(s)	7, 174, 213, 419, 880
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	5 cut(s)	7, 174, 213, 419, 880
GsaI	CCCAGC	1 cut(s)	897
GsuI	CTGGAG	2 cut(s)	369, 1026
HaeIII	GGCC	4 cut(s)	315, 406, 566, 630
HapII	CCGG	2 cut(s)	259, 312
HgaI	GACGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	9 cut(s)	386, 428, 442, 571, 773, 823, 839, 991, 1031
HinfI	GANTC	3 cut(s)	12, 920, 1059
HpaII	CCGG	2 cut(s)	259, 312
HphI	GGTGA	3 cut(s)	124, 189, 676
Hpy166II	GTNNAC	1 cut(s)	1000
Hpy188I	TCNGA	2 cut(s)	19, 205
Hpy8I	GTNNAC	1 cut(s)	1000
HpyAV	CCTTC	6 cut(s)	210, 230, 319, 470, 620, 759
HpyCH4III	ACNGT	2 cut(s)	947, 997
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	5 cut(s)	176, 360, 421, 882, 1083
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 708
HpyF3I	CTNAG	5 cut(s)	18, 45, 204, 266, 1042
HpySE526I	ACGT	1 cut(s)	732
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	9 cut(s)	386, 428, 442, 571, 773, 823, 839, 991, 1031
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	3 cut(s)	114, 376, 681
LmnI	GCTCC	3 cut(s)	350, 751, 766
Lsp1109I	GCAGC	4 cut(s)	18, 160, 405, 866
LweI	GCATC	5 cut(s)	252, 430, 454, 733, 799
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	2 cut(s)	667, 952
MalI	GATC	3 cut(s)	116, 378, 683
MboI	GATC	3 cut(s)	114, 376, 681
MboII	GAAGA	8 cut(s)	68, 71, 80, 86, 427, 607, 610, 920
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	5 cut(s)	483, 660, 676, 715, 924
MroXI	GAANNNNTTC	1 cut(s)	924
MseI	TTAA	4 cut(s)	492, 587, 705, 714
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	2 cut(s)	173, 1098
MspI	CCGG	2 cut(s)	259, 312
MspR9I	CCNGG	3 cut(s)	563, 759, 1005
MvaI	CCWGG	3 cut(s)	563, 759, 1005
MwoI	GCNNNNNNNGC	2 cut(s)	418, 708
NdeII	GATC	3 cut(s)	114, 376, 681
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	9 cut(s)	386, 428, 442, 571, 773, 823, 839, 991, 1031
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	773
NspV	TTCGAA	1 cut(s)	307
PagI	TCATGA	3 cut(s)	424, 819, 835
PceI	AGGCCT	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	3 cut(s)	12, 920, 1059
PkrI	GCNGC	5 cut(s)	8, 175, 214, 420, 881
PshBI	ATTAAT	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	355
Psp6I	CCWGG	3 cut(s)	561, 757, 1003
PspFI	CCCAGC	1 cut(s)	893
PspGI	CCWGG	3 cut(s)	561, 757, 1003
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	3 cut(s)	256, 404, 1020
PstI	CTGCAG	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	1098
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	355
SaqAI	TTAA	4 cut(s)	492, 587, 705, 714
SatI	GCNGC	5 cut(s)	7, 174, 213, 419, 880
Sau3AI	GATC	3 cut(s)	114, 376, 681
Sau96I	GGNCC	3 cut(s)	256, 404, 1020
ScrFI	CCNGG	3 cut(s)	563, 759, 1005
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	5 cut(s)	252, 430, 454, 733, 799
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	307
SinI	GGWCC	2 cut(s)	256, 1020
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	869
SmoI	CTYRAG	1 cut(s)	869
Sse9I	AATT	5 cut(s)	483, 660, 676, 715, 924
SseBI	AGGCCT	1 cut(s)	630
SsiI	CCGC	4 cut(s)	171, 212, 480, 700
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	561, 757, 1003
TaaI	ACNGT	2 cut(s)	947, 997
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	2 cut(s)	307, 645
TasI	AATT	5 cut(s)	483, 660, 676, 715, 924
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	3 cut(s)	12, 920, 1059
Tru1I	TTAA	4 cut(s)	492, 587, 705, 714
Tru9I	TTAA	4 cut(s)	492, 587, 705, 714
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	4 cut(s)	6, 173, 418, 879
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	5 cut(s)	427, 808, 824, 836, 1044
VpaK11BI	GGWCC	2 cut(s)	256, 1020
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	1 cut(s)	483
XceI	RCATGY	1 cut(s)	773
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.