Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Forward (+)

12333927 .. 12335519

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAGGAGCACAAGTTCCCAGACAATTGACTCAACTCCAATGTCTCATCCACAAGAAGAAGAAGAAGAACTGGGCAAACAAGCCATACGTTTAGCCAATGCTGTGATCCTTCCGATGGTTCTGAAGTCAGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGCGAGTCACTCTCACCGTCCAACATTGCGGCTCAGCTCCCCACCAAGAACTCCAACGCCCCGGCTGTTCTGGACCGGATGCTTGGGCTCTTGGCCAGCCACTCTATACTCAAATGCTCGGCCCGGACCGGATCAGATGGGCAGGTAGAGAGGTTGTATAGTGCAGGACCCATATGCAAATTCATTGTCAAGGATCAAAATGGAGGAAACGGGTCCGTTGGTCCTCTGTTTCTCTTGCACCATGATAAGGTTTTCATGGAAAGCTGGTTCCATTTGAATGATGCTATATTGGAAGGGGGAATTCCTTTTAATAGGGCCTATGGTATGACAGCATTTGAGTACCCAGAAACAGATGAGAGGTTCAATCGTGTATTCAACCAGGCCATGTCAAACCACACTACATTGATCTTGAGGAAGATACTCGATGTTTATAAAGGGTTTGAGGGGATCAATGTGCTGGTTGATGTGGGAGGTGGAATTGGTGTTACTCTTAATCTCATCACCAACAAGTACCCCCACATTAAGGGCATTAATTTTGATTTGCCACACGTCCTAGCTGATGCTCCTTCTTATCCAGGTGTGGAGCATGTTGGGGGGGACATGTTTGAAAGTGTCCCAAAAGGAGACGCTATATTCATGAAGTGGATTCTTCATGATTGGAGTGATGAACATTGTTTGACACTTCTCAAGAACTGTTGTAAATCTCTCCCTAGCTCTGGAAAAGTGATCTTTGTGGAATCAATTCTTCCTGAAGTACCTGATAGTAGCGTTACATCCAACATTGTCTGTGAGCAGGATTTACTAATGTTTACTCAGAACCCCGGAGGGAAAGAGAGGACCAAAAAAGAGTACGAGGCATTGGCACTTAAATCTGGATTTTCTCGATTGGAAGTTGTTTGCTCTGCTTACAACAGCTGGGTCATGGAGTTCCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

371

Amino Acids

40.7

Weight (kDa)

5.47

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	30 - 122	1.8e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	147 - 352	1.6e-69	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	4 cut(s)	100, 313, 375, 629
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	353, 474
AcuI	CTGAAG	2 cut(s)	143, 945
AfaI	GTAC	4 cut(s)	515, 686, 930, 1025
AfiI	CCNNNNNNNGG	4 cut(s)	115, 421, 697, 890
AflIII	ACRYGT	2 cut(s)	721, 774
AgsI	TTSAA	5 cut(s)	137, 451, 538, 550, 782
AhdI	GACNNNNNGTC	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	2 cut(s)	552, 748
AloI	GAACNNNNNNTCC	3 cut(s)	30, 425, 457
AluBI	AGCT	6 cut(s)	131, 211, 438, 731, 888, 1089
AluI	AGCT	6 cut(s)	131, 211, 438, 731, 888, 1089
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	48, 792
AlwI	GGATC	4 cut(s)	100, 313, 375, 629
AoxI	GGCC	4 cut(s)	267, 294, 489, 555
ApoI	RAATTY	2 cut(s)	353, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	915
AspS9I	GGNCC	8 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011
AsuC2I	CCSGG	3 cut(s)	236, 298, 996
AsuHPI	GGTGA	2 cut(s)	180, 667
AvaII	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	2 cut(s)	109, 305
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	2 cut(s)	554, 750
BcnI	CCSGG	3 cut(s)	236, 298, 996
BcoDI	GTCTC	2 cut(s)	48, 792
BfaI	CTAG	2 cut(s)	728, 885
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	204
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	5 cut(s)	236, 298, 554, 750, 996
Bme18I	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	8 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011
BmiI	GGNNCC	3 cut(s)	343, 388, 443
BmrFI	CCNGG	5 cut(s)	236, 298, 554, 750, 996
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	243, 445, 724
BmuI	ACTGGG	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	604, 845
BpuMI	CCSGG	3 cut(s)	236, 298, 996
BsaJI	CCNNGG	2 cut(s)	234, 994
BsaWI	WCCGGW	2 cut(s)	249, 302
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 421, 697, 890
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	554, 750
BseDI	CCNNGG	2 cut(s)	234, 994
BseGI	GGATG	3 cut(s)	46, 258, 947
BseLI	CCNNNNNNNGG	4 cut(s)	115, 421, 697, 890
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	221, 1001
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	1089
BsgI	GTGCAG	2 cut(s)	186, 357
BshFI	GGCC	4 cut(s)	269, 296, 491, 557
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	5 cut(s)	236, 250, 298, 303, 996
BslFI	GGGAC	2 cut(s)	773, 785
BslI	CCNNNNNNNGG	4 cut(s)	115, 421, 697, 890
BsmAI	GTCTC	2 cut(s)	48, 792
BsmBI	CGTCTC	1 cut(s)	792
BsmFI	GGGAC	2 cut(s)	773, 785
BsnI	GGCC	4 cut(s)	269, 296, 491, 557
Bsp1286I	GDGCHC	2 cut(s)	11, 264
Bsp143I	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	4 cut(s)	269, 296, 491, 557
BspCNI	CTCAG	2 cut(s)	220, 1000
BspHI	TCATGA	2 cut(s)	810, 826
BspLI	GGNNCC	3 cut(s)	343, 388, 443
BspMI	ACCTGC	1 cut(s)	307
BspPI	GGATC	4 cut(s)	100, 313, 375, 629
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	234, 994
BssMI	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
Bst2UI	CCWGG	2 cut(s)	554, 750
Bst4CI	ACNGT	2 cut(s)	192, 869
BstC8I	GCNNGC	2 cut(s)	169, 271
BstDEI	CTNAG	2 cut(s)	207, 987
BstF5I	GGATG	3 cut(s)	46, 258, 947
BstKTI	GATC	6 cut(s)	108, 308, 370, 582, 624, 903
BstMAI	GTCTC	2 cut(s)	48, 792
BstMBI	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
BstNI	CCWGG	2 cut(s)	554, 750
BstNSI	RCATGY	2 cut(s)	764, 778
BstSCI	CCNGG	5 cut(s)	234, 296, 552, 748, 994
BsuRI	GGCC	4 cut(s)	269, 296, 491, 557
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	3 cut(s)	46, 258, 947
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	2 cut(s)	169, 271
CciI	TCATGA	2 cut(s)	810, 826
Cfr13I	GGNCC	8 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011
CpoI	CGGWCCG	1 cut(s)	300
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	4 cut(s)	514, 685, 929, 1024
CspI	CGGWCCG	1 cut(s)	300
CviAII	CATG	8 cut(s)	416, 430, 559, 761, 775, 811, 827, 1096
CviQI	GTAC	4 cut(s)	514, 685, 929, 1024
DdeI	CTNAG	2 cut(s)	207, 987
DpnI	GATC	6 cut(s)	107, 307, 369, 581, 623, 902
DpnII	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	267
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
Eco57I	CTGAAG	2 cut(s)	143, 945
EcoO109I	RGGNCCY	2 cut(s)	341, 489
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	552, 748
EcoT38I	GRGCYC	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	792
FaeI	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
FaqI	GGGAC	2 cut(s)	773, 785
FatI	CATG	8 cut(s)	415, 429, 558, 760, 774, 810, 826, 1095
FauNDI	CATATG	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	3 cut(s)	33, 265, 934
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	728, 885
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	1093
HaeIII	GGCC	4 cut(s)	269, 296, 491, 557
HapII	CCGG	5 cut(s)	236, 250, 298, 303, 996
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
HinfI	GANTC	4 cut(s)	29, 179, 820, 911
HpaII	CCGG	5 cut(s)	236, 250, 298, 303, 996
HphI	GGTGA	2 cut(s)	180, 667
Hpy166II	GTNNAC	1 cut(s)	984
Hpy188I	TCNGA	4 cut(s)	114, 123, 310, 990
Hpy8I	GTNNAC	1 cut(s)	984
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	119, 461, 750
HpyCH4III	ACNGT	2 cut(s)	192, 869
HpyCH4IV	ACGT	3 cut(s)	88, 144, 723
HpyCH4V	TGCA	4 cut(s)	167, 338, 351, 412
HpyF3I	CTNAG	2 cut(s)	207, 987
HpySE526I	ACGT	3 cut(s)	88, 144, 723
Hsp92II	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
Kzo9I	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
LmnI	GCTCC	4 cut(s)	6, 216, 742, 757
LweI	GCATC	3 cut(s)	243, 445, 724
MaeI	CTAG	2 cut(s)	728, 885
MaeII	ACGT	3 cut(s)	88, 144, 723
MaeIII	GTNAC	3 cut(s)	180, 658, 943
MalI	GATC	6 cut(s)	107, 307, 369, 581, 623, 902
MboI	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
MboII	GAAGA	7 cut(s)	68, 71, 74, 77, 601, 815, 911
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	11, 264
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	6 cut(s)	24, 353, 474, 651, 706, 915
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	23, 188
MmeI	TCCRAC	3 cut(s)	219, 252, 975
Mox20I	TGGCCA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	5 cut(s)	483, 666, 696, 705, 1041
MslI	CAYNNNNRTG	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	1089
MspI	CCGG	5 cut(s)	236, 250, 298, 303, 996
MspR9I	CCNGG	5 cut(s)	236, 298, 554, 750, 996
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	554, 750
NciI	CCSGG	3 cut(s)	236, 298, 996
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
NlaIII	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
NlaIV	GGNNCC	3 cut(s)	343, 388, 443
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	2 cut(s)	764, 778
PagI	TCATGA	2 cut(s)	810, 826
PciI	ACATGT	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	820, 911
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	23, 187
PpsI	GAGTC	2 cut(s)	23, 187
PpuMI	RGGWCCY	1 cut(s)	341
PscI	ACATGT	1 cut(s)	774
PshBI	ATTAAT	1 cut(s)	705
PsiI	TTATAA	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	552, 748
PspFI	CCCAGC	1 cut(s)	1089
PspGI	CCWGG	2 cut(s)	552, 748
PspN4I	GGNNCC	3 cut(s)	343, 388, 443
PspPI	GGNCC	8 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011
PspPPI	RGGWCCY	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	1089
RsaI	GTAC	4 cut(s)	515, 686, 930, 1025
RsaNI	GTAC	4 cut(s)	514, 685, 929, 1024
RseI	CAYNNNNRTG	1 cut(s)	450
Rsr2I	CGGWCCG	1 cut(s)	300
RsrII	CGGWCCG	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	483, 666, 696, 705, 1041
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	6 cut(s)	105, 305, 367, 579, 621, 900
Sau96I	GGNCC	8 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011
SchI	GAGTC	2 cut(s)	23, 188
ScrFI	CCNGG	5 cut(s)	236, 298, 554, 750, 996
SduI	GDGCHC	2 cut(s)	11, 264
SfaNI	GCATC	3 cut(s)	243, 445, 724
SinI	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	583, 860
SmoI	CTYRAG	2 cut(s)	583, 860
Sse9I	AATT	6 cut(s)	24, 353, 474, 651, 706, 915
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	728, 885
StyD4I	CCNGG	5 cut(s)	234, 296, 552, 748, 994
TaaI	ACNGT	2 cut(s)	192, 869
TaiI	ACGT	3 cut(s)	91, 147, 726
TaqI	TCGA	2 cut(s)	597, 1057
TasI	AATT	6 cut(s)	24, 353, 474, 651, 706, 915
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	820, 911
Tru1I	TTAA	5 cut(s)	483, 666, 696, 705, 1041
Tru9I	TTAA	5 cut(s)	483, 666, 696, 705, 1041
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	6 cut(s)	346, 418, 799, 815, 827, 855
TspGWI	ACGGA	1 cut(s)	379
VpaK11BI	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	2 cut(s)	353, 474
XceI	RCATGY	2 cut(s)	764, 778
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	2 cut(s)	728, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.