Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Forward (+)

12274535 .. 12276397

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAGCAGCACTAGTCCCCAGCCAATTGACTCGACTCCAATGTCTCATCCACAACAAGAAGAAGAAGAGGAACTGGGCAAACAAGCCATACGTTTAGCCAATGTCGTCGTCATCCTTCCGATGGTTCTGAAGTCAGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGCGAGTCACTCTCACCGTCCGACATTGCGGCTCAGCTCCCCACCAAGAACTCCAACGCCCCGGCTGTTCTGGACCGGATGCTTAGGCTCTTGGCCAGCCACTCTATACTCAAATGCTCGGCCCGGACCGGATCAGATGGGCAGGTAGAGAGGTTGTATAGTGCAGGACCCATATGCAAATTCCTTGTCAAGGATCAAAATGGAGGAACCGGGTCCGTTGGTCCTCTGTTTCTCTTGCACCATGATAAGGTTTTCATGGAAAGCTGGTTCCATTTGAATGATGCTATATTGGAAGGGGGAATTCCTTTTAATAGGGCCTATGGTATGACAGCATTTGAGTACCCAGAAACAGATGAGAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACCACATTGATCTTAAAGAAGATACTCGATGTTTATAGAGGGTTTGAGGGGGTCAATGTGCTGGTTGATGTGGGAGGTGGAATTGGTGTTACTCTTAATCTCATCACCAACAAGTACCCCCACATTAAGGGCATCAATTTCGATTTGCCACACGTCCTAGCTGATGCTCCTTCTTATCCAGGTGTGGAGCATGTTGGGGGGGACATGTTTAAAAGTGTCCCACAAGGAGATGCTATATTCATGAAGTGGATTCTTCATGATTGGAGTGATGAACATTGTCTGACACTTCTCAAGAACTGTTGTAAATCTCTCCCTAGCTCTGGAAAAGTGATCTTTGTGGAATCAGTTCTTCCGGAAGTACCTGATAGTAGCGTTACATCCAACATTGTCTGCGAGCAGGATTTACTAATGTTTACTCAGAACCCAGGAGGGAAAGAGAGGACCAAAAAAGAGTACGAGGCATTGGCACTTAAATCTGGATTTTCTCGATTGGAAGTTGTTTGCTCTGCTTACAACAGCTGGGTCATGGAGTTCCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

372

Amino Acids

40.95

Weight (kDa)

5.47

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	38 - 125	1.4e-17	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	149 - 354	6e-69	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	313
AccIII	TCCGGA	1 cut(s)	928
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	319, 381
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	2 cut(s)	359, 480
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	4 cut(s)	521, 692, 936, 1031
AfiI	CCNNNNNNNGG	5 cut(s)	121, 370, 427, 703, 896
AflIII	ACRYGT	2 cut(s)	727, 780
AgsI	TTSAA	4 cut(s)	143, 457, 544, 556
AhdI	GACNNNNNGTC	1 cut(s)	184
AhlI	ACTAGT	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	3 cut(s)	558, 754, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	431, 463
AluBI	AGCT	6 cut(s)	137, 217, 444, 737, 894, 1095
AluI	AGCT	6 cut(s)	137, 217, 444, 737, 894, 1095
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	319, 381
Aor13HI	TCCGGA	1 cut(s)	928
AoxI	GGCC	4 cut(s)	273, 300, 495, 561
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	2 cut(s)	359, 480
ArsI	GACNNNNNNTTYG	2 cut(s)	351, 383
Asp700I	GAANNNNTTC	1 cut(s)	921
AspS9I	GGNCC	8 cut(s)	253, 301, 306, 347, 393, 401, 495, 1017
AsuC2I	CCSGG	3 cut(s)	242, 304, 391
AsuHPI	GGTGA	2 cut(s)	186, 673
AvaII	GGWCC	6 cut(s)	253, 306, 347, 393, 401, 1017
BalI	TGGCCA	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	115, 311
BceAI	ACGGC	1 cut(s)	196
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BciT130I	CCWGG	3 cut(s)	560, 756, 1002
BcnI	CCSGG	3 cut(s)	242, 304, 391
BcoDI	GTCTC	1 cut(s)	48
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	3 cut(s)	12, 734, 891
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	7, 210
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	2 cut(s)	8, 211
Bme1390I	CCNGG	6 cut(s)	242, 304, 391, 560, 756, 1002
Bme18I	GGWCC	6 cut(s)	253, 306, 347, 393, 401, 1017
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	8 cut(s)	253, 301, 306, 347, 393, 401, 495, 1017
BmiI	GGNNCC	4 cut(s)	349, 388, 394, 449
BmrFI	CCNGG	6 cut(s)	242, 304, 391, 560, 756, 1002
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	5 cut(s)	249, 451, 717, 730, 796
BmuI	ACTGGG	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	3 cut(s)	242, 304, 391
BsaJI	CCNNGG	2 cut(s)	240, 1000
BsaWI	WCCGGW	3 cut(s)	255, 308, 928
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 370, 427, 703, 896
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	204
BseAI	TCCGGA	1 cut(s)	928
BseBI	CCWGG	3 cut(s)	560, 756, 1002
BseDI	CCNNGG	2 cut(s)	240, 1000
BseGI	GGATG	4 cut(s)	46, 111, 264, 953
BseLI	CCNNNNNNNGG	5 cut(s)	121, 370, 427, 703, 896
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	227, 1007
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	18
BseYI	CCCAGC	2 cut(s)	18, 1095
BsgI	GTGCAG	2 cut(s)	192, 363
BshFI	GGCC	4 cut(s)	275, 302, 497, 563
BsiSI	CCGG	6 cut(s)	242, 256, 304, 309, 390, 929
BslFI	GGGAC	2 cut(s)	779, 791
BslI	CCNNNNNNNGG	5 cut(s)	121, 370, 427, 703, 896
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	779, 791
BsnI	GGCC	4 cut(s)	275, 302, 497, 563
Bsp13I	TCCGGA	1 cut(s)	928
Bsp143I	GATC	4 cut(s)	311, 373, 585, 906
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	4 cut(s)	275, 302, 497, 563
BspCNI	CTCAG	2 cut(s)	226, 1006
BspEI	TCCGGA	1 cut(s)	928
BspHI	TCATGA	2 cut(s)	816, 832
BspLI	GGNNCC	4 cut(s)	349, 388, 394, 449
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	319, 381
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	240, 1000
BssMI	GATC	4 cut(s)	311, 373, 585, 906
Bst2UI	CCWGG	3 cut(s)	560, 756, 1002
Bst4CI	ACNGT	2 cut(s)	198, 875
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	175, 277, 971
BstDEI	CTNAG	3 cut(s)	213, 263, 993
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	4 cut(s)	46, 111, 264, 953
BstKTI	GATC	4 cut(s)	314, 376, 588, 909
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	4 cut(s)	311, 373, 585, 906
BstNI	CCWGG	3 cut(s)	560, 756, 1002
BstNSI	RCATGY	2 cut(s)	770, 784
BstSCI	CCNGG	6 cut(s)	240, 302, 389, 558, 754, 1000
BstV1I	GCAGC	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	275, 302, 497, 563
BtrI	CACGTC	1 cut(s)	730
BtsCI	GGATG	4 cut(s)	46, 111, 264, 953
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	175, 277, 971
CciI	TCATGA	2 cut(s)	816, 832
Cfr13I	GGNCC	8 cut(s)	253, 301, 306, 347, 393, 401, 495, 1017
CpoI	CGGWCCG	1 cut(s)	306
Csp6I	GTAC	4 cut(s)	520, 691, 935, 1030
CspI	CGGWCCG	1 cut(s)	306
CviAII	CATG	8 cut(s)	422, 436, 565, 767, 781, 817, 833, 1102
CviQI	GTAC	4 cut(s)	520, 691, 935, 1030
DdeI	CTNAG	3 cut(s)	213, 263, 993
DpnI	GATC	4 cut(s)	313, 375, 587, 908
DpnII	GATC	4 cut(s)	311, 373, 585, 906
DraI	TTTAAA	1 cut(s)	787
DrdI	GACNNNNNNGTC	1 cut(s)	40
DriI	GACNNNNNGTC	1 cut(s)	184
DseDI	GACNNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	60
Eco47I	GGWCC	6 cut(s)	253, 306, 347, 393, 401, 1017
Eco57I	CTGAAG	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoO109I	RGGNCCY	2 cut(s)	347, 495
EcoRI	GAATTC	1 cut(s)	480
EcoRII	CCWGG	3 cut(s)	558, 754, 1000
FaeI	CATG	8 cut(s)	425, 439, 568, 770, 784, 820, 836, 1105
FaqI	GGGAC	2 cut(s)	779, 791
FatI	CATG	8 cut(s)	421, 435, 564, 766, 780, 816, 832, 1101
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	2 cut(s)	7, 210
FokI	GGATG	4 cut(s)	33, 98, 271, 940
Fsp4HI	GCNGC	2 cut(s)	7, 210
FspBI	CTAG	3 cut(s)	12, 734, 891
GluI	GCNGC	2 cut(s)	7, 210
GsaI	CCCAGC	2 cut(s)	22, 1099
HaeIII	GGCC	4 cut(s)	275, 302, 497, 563
HapII	CCGG	6 cut(s)	242, 256, 304, 309, 390, 929
Hin1II	CATG	8 cut(s)	425, 439, 568, 770, 784, 820, 836, 1105
HinfI	GANTC	5 cut(s)	29, 34, 185, 826, 917
HpaII	CCGG	6 cut(s)	242, 256, 304, 309, 390, 929
HphI	GGTGA	2 cut(s)	186, 673
Hpy166II	GTNNAC	1 cut(s)	990
Hpy188I	TCNGA	6 cut(s)	120, 129, 202, 316, 858, 996
Hpy188III	TCNNGA	9 cut(s)	140, 251, 817, 833, 868, 897, 929, 1053, 1062
Hpy8I	GTNNAC	1 cut(s)	990
Hpy99I	CGWCG	2 cut(s)	110, 182
HpyAV	CCTTC	3 cut(s)	125, 467, 756
HpyCH4III	ACNGT	2 cut(s)	198, 875
HpyCH4IV	ACGT	3 cut(s)	91, 150, 729
HpyCH4V	TGCA	4 cut(s)	173, 344, 357, 418
HpyF3I	CTNAG	3 cut(s)	213, 263, 993
HpySE526I	ACGT	3 cut(s)	91, 150, 729
Hsp92II	CATG	8 cut(s)	425, 439, 568, 770, 784, 820, 836, 1105
Kpn2I	TCCGGA	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	311, 373, 585, 906
LmnI	GCTCC	3 cut(s)	222, 748, 763
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	5 cut(s)	249, 451, 717, 730, 796
MaeI	CTAG	3 cut(s)	12, 734, 891
MaeII	ACGT	3 cut(s)	91, 150, 729
MaeIII	GTNAC	3 cut(s)	186, 664, 949
MalI	GATC	4 cut(s)	313, 375, 587, 908
MboI	GATC	4 cut(s)	311, 373, 585, 906
MboII	GAAGA	6 cut(s)	71, 74, 77, 607, 821, 917
MfeI	CAATTG	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	5 cut(s)	24, 359, 480, 657, 712
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	3 cut(s)	23, 28, 194
MmeI	TCCRAC	3 cut(s)	225, 258, 981
Mox20I	TGGCCA	1 cut(s)	275
MroI	TCCGGA	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	6 cut(s)	489, 590, 672, 702, 786, 1047
MslI	CAYNNNNRTG	1 cut(s)	456
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	1095
MspI	CCGG	6 cut(s)	242, 256, 304, 309, 390, 929
MspR9I	CCNGG	6 cut(s)	242, 304, 391, 560, 756, 1002
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	3 cut(s)	560, 756, 1002
NciI	CCSGG	3 cut(s)	242, 304, 391
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	4 cut(s)	311, 373, 585, 906
NlaIII	CATG	8 cut(s)	425, 439, 568, 770, 784, 820, 836, 1105
NlaIV	GGNNCC	4 cut(s)	349, 388, 394, 449
NmeAIII	GCCGAG	1 cut(s)	278
NmuCI	GTSAC	1 cut(s)	186
NspI	RCATGY	2 cut(s)	770, 784
PagI	TCATGA	2 cut(s)	816, 832
PciI	ACATGT	1 cut(s)	780
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	826, 917
PkrI	GCNGC	2 cut(s)	8, 211
PleI	GAGTC	3 cut(s)	23, 28, 193
PpsI	GAGTC	3 cut(s)	23, 28, 193
PpuMI	RGGWCCY	1 cut(s)	347
PscI	ACATGT	1 cut(s)	780
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	3 cut(s)	558, 754, 1000
PspFI	CCCAGC	2 cut(s)	18, 1095
PspGI	CCWGG	3 cut(s)	558, 754, 1000
PspN4I	GGNNCC	4 cut(s)	349, 388, 394, 449
PspPI	GGNCC	8 cut(s)	253, 301, 306, 347, 393, 401, 495, 1017
PspPPI	RGGWCCY	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	1095
RsaI	GTAC	4 cut(s)	521, 692, 936, 1031
RsaNI	GTAC	4 cut(s)	520, 691, 935, 1030
RseI	CAYNNNNRTG	1 cut(s)	456
Rsr2I	CGGWCCG	1 cut(s)	306
RsrII	CGGWCCG	1 cut(s)	306
SaqAI	TTAA	6 cut(s)	489, 590, 672, 702, 786, 1047
SatI	GCNGC	2 cut(s)	7, 210
Sau3AI	GATC	4 cut(s)	311, 373, 585, 906
Sau96I	GGNCC	8 cut(s)	253, 301, 306, 347, 393, 401, 495, 1017
SchI	GAGTC	3 cut(s)	23, 28, 194
ScrFI	CCNGG	6 cut(s)	242, 304, 391, 560, 756, 1002
SfaNI	GCATC	5 cut(s)	249, 451, 717, 730, 796
SinI	GGWCC	6 cut(s)	253, 306, 347, 393, 401, 1017
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	5 cut(s)	24, 359, 480, 657, 712
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	3 cut(s)	12, 734, 891
StyD4I	CCNGG	6 cut(s)	240, 302, 389, 558, 754, 1000
TaaI	ACNGT	2 cut(s)	198, 875
TaiI	ACGT	3 cut(s)	94, 153, 732
TaqI	TCGA	4 cut(s)	32, 603, 717, 1063
TasI	AATT	5 cut(s)	24, 359, 480, 657, 712
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	826, 917
Tru1I	TTAA	6 cut(s)	489, 590, 672, 702, 786, 1047
Tru9I	TTAA	6 cut(s)	489, 590, 672, 702, 786, 1047
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	5 cut(s)	424, 805, 821, 833, 861
TspGWI	ACGGA	1 cut(s)	385
VpaK11BI	GGWCC	6 cut(s)	253, 306, 347, 393, 401, 1017
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	2 cut(s)	359, 480
XceI	RCATGY	2 cut(s)	770, 784
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	3 cut(s)	12, 734, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.