Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Reverse (-)

56784627 .. 56797261

Gene Structure 12635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGCACAAGTCCCCAGACAATTGACTCAACTCCAATGTCTCATCCACAACAAGAAGAAGAAGAGGAACTGGGCAAACAAGCCATACGTTTAGCCAATGTCGTAATCCTTCCGATGGTTCTGAAGTCAGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGTGAGTCACTCTCACCGTCCGACATTGCGGCTCAGCTCCCCACCAAGAACTCCAACGCCCCGGCTGTTCTGGACCGGATGCTTAGGCTCTTGGCCAGCCACTCTATACTCAAATGCTCGGCCCGGACCGGATCCGATGGGCAGGTAGAGAGGTTGTATAGTGCAGGACCCATATGCAAATTCCTTGTCAAGGATCAAAATGGAGGAACCGGATCCGTTGGCCCTCTGTTTCTCTTGCACCATGATAAGGTTTTCATGGAAAGCTGGTTCCATTTGAATGATGCTATATTGGAAGGGGGAATTCCTTTTAATAGGGCCTATGGTATGACAGCATTTGAGTACCCAGAAACAAATGAGAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACCACATTGATCTTGAAGAAGATACTCGATGTTTATAGAGGGTTTGAGGGGGTCAATGTGCTGGTTGATGTGGGAGGTGGAATTGGTGTTACTCTTAATCTCATCACCAACAAGTACCCGCACATTAAGGGCATCAATTTTGATTTGCCACACGTCCTAGCTGATGCTCCTTCTTATCCAGGTGTGGAGCATGTTGGGGGGGACATGTTTAAAAGTGTCCCACAAGGAGATGCTATATTCATGAAGTGGATTCTTCATGATTGGAGTGATGAACATTGTTTGACACTTCTCAAGACCTGCTGTAAATCTCTCCCTAGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

297

Amino Acids

32.57

Weight (kDa)

5.63

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	30 - 123	9.5e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	147 - 295	2.4e-52	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	307, 875
AciI	CCGC	2 cut(s)	203, 689
AclWI	GGATC	5 cut(s)	300, 313, 375, 381, 394
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	353, 474
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	515, 686
AfiI	CCNNNNNNNGG	3 cut(s)	115, 364, 421
AflIII	ACRYGT	2 cut(s)	721, 774
AgsI	TTSAA	5 cut(s)	137, 451, 538, 550, 586
AhdI	GACNNNNNGTC	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	2 cut(s)	552, 748
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	5 cut(s)	131, 211, 438, 731, 888
AluI	AGCT	5 cut(s)	131, 211, 438, 731, 888
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	5 cut(s)	300, 313, 375, 381, 394
AoxI	GGCC	5 cut(s)	267, 294, 394, 489, 555
ApoI	RAATTY	2 cut(s)	353, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
AspS9I	GGNCC	6 cut(s)	247, 295, 300, 341, 395, 489
AsuC2I	CCSGG	2 cut(s)	236, 298
AsuHPI	GGTGA	3 cut(s)	180, 188, 667
AvaII	GGWCC	3 cut(s)	247, 300, 341
BalI	TGGCCA	1 cut(s)	269
BamHI	GGATCC	2 cut(s)	305, 386
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	2 cut(s)	109, 305
BciT130I	CCWGG	2 cut(s)	554, 750
BcnI	CCSGG	2 cut(s)	236, 298
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	2 cut(s)	728, 885
BfuAI	ACCTGC	2 cut(s)	307, 875
BisI	GCNGC	1 cut(s)	204
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	4 cut(s)	236, 298, 554, 750
Bme18I	GGWCC	3 cut(s)	247, 300, 341
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	6 cut(s)	247, 295, 300, 341, 395, 489
BmiI	GGNNCC	5 cut(s)	307, 343, 382, 388, 443
BmrFI	CCNGG	4 cut(s)	236, 298, 554, 750
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	5 cut(s)	243, 445, 711, 724, 790
BmuI	ACTGGG	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	845
BpuMI	CCSGG	2 cut(s)	236, 298
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	3 cut(s)	249, 302, 383
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 364, 421
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	554, 750
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	43, 258
BseLI	CCNNNNNNNGG	3 cut(s)	115, 364, 421
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	75
BsgI	GTGCAG	2 cut(s)	186, 357
BshFI	GGCC	5 cut(s)	269, 296, 396, 491, 557
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	236, 250, 298, 303, 384
BslFI	GGGAC	2 cut(s)	773, 785
BslI	CCNNNNNNNGG	3 cut(s)	115, 364, 421
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	773, 785
BsnI	GGCC	5 cut(s)	269, 296, 396, 491, 557
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	305, 367, 386, 579
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	2 cut(s)	203, 689
BspANI	GGCC	5 cut(s)	269, 296, 396, 491, 557
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	2 cut(s)	810, 826
BspLI	GGNNCC	5 cut(s)	307, 343, 382, 388, 443
BspMI	ACCTGC	2 cut(s)	307, 875
BspPI	GGATC	5 cut(s)	300, 313, 375, 381, 394
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	4 cut(s)	305, 367, 386, 579
Bst2UI	CCWGG	2 cut(s)	554, 750
Bst4CI	ACNGT	2 cut(s)	176, 192
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	169, 271
BstDEI	CTNAG	2 cut(s)	207, 257
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	43, 258
BstKTI	GATC	4 cut(s)	308, 370, 389, 582
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	305, 367, 386, 579
BstNI	CCWGG	2 cut(s)	554, 750
BstNSI	RCATGY	2 cut(s)	764, 778
BstSCI	CCNGG	4 cut(s)	234, 296, 552, 748
BstX2I	RGATCY	2 cut(s)	305, 386
BstYI	RGATCY	2 cut(s)	305, 386
BsuRI	GGCC	5 cut(s)	269, 296, 396, 491, 557
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	2 cut(s)	43, 258
BveI	ACCTGC	2 cut(s)	307, 875
Cac8I	GCNNGC	2 cut(s)	169, 271
CciI	TCATGA	2 cut(s)	810, 826
Cfr13I	GGNCC	6 cut(s)	247, 295, 300, 341, 395, 489
CpoI	CGGWCCG	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	514, 685
CspI	CGGWCCG	1 cut(s)	300
CviAII	CATG	7 cut(s)	416, 430, 559, 761, 775, 811, 827
CviQI	GTAC	2 cut(s)	514, 685
DdeI	CTNAG	2 cut(s)	207, 257
DpnI	GATC	4 cut(s)	307, 369, 388, 581
DpnII	GATC	4 cut(s)	305, 367, 386, 579
DraI	TTTAAA	1 cut(s)	781
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	57
Eco47I	GGWCC	3 cut(s)	247, 300, 341
Eco57I	CTGAAG	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoO109I	RGGNCCY	2 cut(s)	341, 489
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	552, 748
FaeI	CATG	7 cut(s)	419, 433, 562, 764, 778, 814, 830
FaqI	GGGAC	2 cut(s)	773, 785
FatI	CATG	7 cut(s)	415, 429, 558, 760, 774, 810, 826
FauI	CCCGC	1 cut(s)	696
FauNDI	CATATG	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	2 cut(s)	30, 265
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	728, 885
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	269, 296, 396, 491, 557
HapII	CCGG	5 cut(s)	236, 250, 298, 303, 384
Hin1II	CATG	7 cut(s)	419, 433, 562, 764, 778, 814, 830
HinfI	GANTC	3 cut(s)	26, 179, 820
HpaII	CCGG	5 cut(s)	236, 250, 298, 303, 384
HphI	GGTGA	3 cut(s)	180, 188, 667
Hpy188I	TCNGA	4 cut(s)	114, 123, 196, 310
Hpy188III	TCNNGA	7 cut(s)	134, 245, 583, 811, 827, 862, 891
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	119, 461, 750
HpyCH4III	ACNGT	2 cut(s)	176, 192
HpyCH4IV	ACGT	3 cut(s)	88, 144, 723
HpyCH4V	TGCA	4 cut(s)	167, 338, 351, 412
HpyF3I	CTNAG	2 cut(s)	207, 257
HpySE526I	ACGT	3 cut(s)	88, 144, 723
Hsp92II	CATG	7 cut(s)	419, 433, 562, 764, 778, 814, 830
Kzo9I	GATC	4 cut(s)	305, 367, 386, 579
LmnI	GCTCC	4 cut(s)	216, 742, 757, 893
LweI	GCATC	5 cut(s)	243, 445, 711, 724, 790
MaeI	CTAG	2 cut(s)	728, 885
MaeII	ACGT	3 cut(s)	88, 144, 723
MaeIII	GTNAC	2 cut(s)	180, 658
MalI	GATC	4 cut(s)	307, 369, 388, 581
MboI	GATC	4 cut(s)	305, 367, 386, 579
MboII	GAAGA	6 cut(s)	68, 71, 74, 598, 601, 815
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	2 cut(s)	305, 386
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	5 cut(s)	21, 353, 474, 651, 706
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	20, 188
MmeI	TCCRAC	2 cut(s)	219, 252
MnlI	CCTC	8 cut(s)	58, 318, 371, 408, 525, 602, 610, 638
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	4 cut(s)	483, 666, 696, 780
MslI	CAYNNNNRTG	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	5 cut(s)	236, 250, 298, 303, 384
MspR9I	CCNGG	4 cut(s)	236, 298, 554, 750
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	2 cut(s)	554, 750
NciI	CCSGG	2 cut(s)	236, 298
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	4 cut(s)	305, 367, 386, 579
NlaIII	CATG	7 cut(s)	419, 433, 562, 764, 778, 814, 830
NlaIV	GGNNCC	5 cut(s)	307, 343, 382, 388, 443
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	2 cut(s)	764, 778
PagI	TCATGA	2 cut(s)	810, 826
PciI	ACATGT	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	820
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	20, 187
PpsI	GAGTC	2 cut(s)	20, 187
PpuMI	RGGWCCY	1 cut(s)	341
PscI	ACATGT	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	552, 748
PspGI	CCWGG	2 cut(s)	552, 748
PspN4I	GGNNCC	5 cut(s)	307, 343, 382, 388, 443
PspPI	GGNCC	6 cut(s)	247, 295, 300, 341, 395, 489
PspPPI	RGGWCCY	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	305, 386
RsaI	GTAC	2 cut(s)	515, 686
RsaNI	GTAC	2 cut(s)	514, 685
RseI	CAYNNNNRTG	1 cut(s)	450
Rsr2I	CGGWCCG	1 cut(s)	300
RsrII	CGGWCCG	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	483, 666, 696, 780
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	305, 367, 386, 579
Sau96I	GGNCC	6 cut(s)	247, 295, 300, 341, 395, 489
SchI	GAGTC	2 cut(s)	20, 188
ScrFI	CCNGG	4 cut(s)	236, 298, 554, 750
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	5 cut(s)	243, 445, 711, 724, 790
SinI	GGWCC	3 cut(s)	247, 300, 341
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	5 cut(s)	21, 353, 474, 651, 706
SsiI	CCGC	2 cut(s)	203, 689
SspMI	CTAG	2 cut(s)	728, 885
StyD4I	CCNGG	4 cut(s)	234, 296, 552, 748
TaaI	ACNGT	2 cut(s)	176, 192
TaiI	ACGT	3 cut(s)	91, 147, 726
TaqI	TCGA	1 cut(s)	597
TasI	AATT	5 cut(s)	21, 353, 474, 651, 706
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	820
Tru1I	TTAA	4 cut(s)	483, 666, 696, 780
Tru9I	TTAA	4 cut(s)	483, 666, 696, 780
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	5 cut(s)	418, 799, 815, 827, 855
TspGWI	ACGGA	1 cut(s)	379
VpaK11BI	GGWCC	3 cut(s)	247, 300, 341
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	353, 474
XceI	RCATGY	2 cut(s)	764, 778
XspI	CTAG	2 cut(s)	728, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.