Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Reverse (-)

36207723 .. 36209338

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAGGAGCACAAGTCCCCAGACAATTGACTCAACTCCAATGTCTCATCCACAACAAGAAGAAGAAGAGGAACTGGGCAAACAAGCCATACGTTTAGCCAATGTCGTAATCCTTCCGATGGTTCTGAAGTCAGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGCGAGTCACTCTCACCGTCCGACATTGCGGCTCAGCTCCCCACCAAGAACTCCAACGCCCCGGCTGTTCTGGACCGGATGCTTAGGCTCTTGGCCAGCCACTCTATACTCAAATGCTCGGCCCGGACCGGATCAGATGGGCAGGTAGAGAGGTTGTATAGTGCAGGACCCATATGCAAATTCCTTGTCAAGGATCAAAACGGAGGAACCGGGTCCGTTGGCCCTCTGTTTCTCTTGCACCATGATAAGGTTTTCATGGAAAGCTGGTTCCATTTGAATGATGCTATATTGGAAGGGGGAATTCCTTTTAATAGGGCCTATGGTATGACAGCTTTTGAGTACCCAGAAACAGATGAGAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACCACATTGATCTTGAAGAAGATACTCGATGTTTATAGAGGGTTTGAGGGGATCAATGTGCTGGTTGATGTGGGAGGTGGAATTGGTGTTACTCTTAATCTCATCACCAACAAGTACCCGCACATTAAGGGCATCAATTTTGATTTGCCACACGTCCTAGCTGATGCTCCTTCTTATCCAGGTGTGGAGCATGTTGGGGGGGACATGTTTAAAAGTGTCCCACAAGGAGATGCTATATTCATGAAGTGGATTCTTCATGATTGGAGTGATGAACATTGTTTGACACTTCTCAAGAACTGTTGTAAATCTCTCCCTAGCTCTGGAAAAGTGATATTTGTGGAATCAATTCTTCCGGAAGTTCCTGATAGTACCGTTACATCCAACATTGTCTGCGAGCAGGATTTACTAATGTTTACTCAGAACCCAGGAGGGAAAGAGAGGACCAAAAAAGAGTACGAGGCATTGGCACTTAAATCTGGATTTTCTCGATTGGAAGTTGTTTGCTCTGCTTACAACAGCTGGGTCATGAAGTTCCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

371

Amino Acids

40.96

Weight (kDa)

5.75

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	31 - 124	1.5e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	148 - 353	4.6e-69	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	925
AciI	CCGC	2 cut(s)	206, 692
AclWI	GGATC	3 cut(s)	316, 378, 632
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	2 cut(s)	356, 477
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	4 cut(s)	518, 689, 943, 1028
AfiI	CCNNNNNNNGG	4 cut(s)	118, 367, 424, 893
AflIII	ACRYGT	2 cut(s)	724, 777
AgsI	TTSAA	5 cut(s)	140, 454, 541, 553, 589
AhdI	GACNNNNNGTC	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	727
AjnI	CCWGG	3 cut(s)	555, 751, 997
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	7 cut(s)	134, 214, 441, 509, 734, 891, 1092
AluI	AGCT	7 cut(s)	134, 214, 441, 509, 734, 891, 1092
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	3 cut(s)	316, 378, 632
Aor13HI	TCCGGA	1 cut(s)	925
AoxI	GGCC	5 cut(s)	270, 297, 397, 492, 558
ApoI	RAATTY	2 cut(s)	356, 477
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp700I	GAANNNNTTC	1 cut(s)	918
AspS9I	GGNCC	8 cut(s)	250, 298, 303, 344, 390, 398, 492, 1014
AsuC2I	CCSGG	3 cut(s)	239, 301, 388
AsuHPI	GGTGA	2 cut(s)	183, 670
AvaII	GGWCC	5 cut(s)	250, 303, 344, 390, 1014
BalI	TGGCCA	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	2 cut(s)	112, 308
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	3 cut(s)	557, 753, 999
BcnI	CCSGG	3 cut(s)	239, 301, 388
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	731, 888
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	1 cut(s)	207
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	6 cut(s)	239, 301, 388, 557, 753, 999
Bme18I	GGWCC	5 cut(s)	250, 303, 344, 390, 1014
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	8 cut(s)	250, 298, 303, 344, 390, 398, 492, 1014
BmiI	GGNNCC	4 cut(s)	346, 385, 391, 446
BmrFI	CCNGG	6 cut(s)	239, 301, 388, 557, 753, 999
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	5 cut(s)	246, 448, 714, 727, 793
BmuI	ACTGGG	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu10I	CCTNAGC	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	3 cut(s)	239, 301, 388
BsaJI	CCNNGG	2 cut(s)	237, 997
BsaWI	WCCGGW	3 cut(s)	252, 305, 925
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 367, 424, 893
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	925
BseBI	CCWGG	3 cut(s)	557, 753, 999
BseDI	CCNNGG	2 cut(s)	237, 997
BseGI	GGATG	3 cut(s)	46, 261, 950
BseLI	CCNNNNNNNGG	4 cut(s)	118, 367, 424, 893
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	224, 1004
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	1092
BsgI	GTGCAG	2 cut(s)	189, 360
BshFI	GGCC	5 cut(s)	272, 299, 399, 494, 560
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	6 cut(s)	239, 253, 301, 306, 387, 926
BslFI	GGGAC	2 cut(s)	776, 788
BslI	CCNNNNNNNGG	4 cut(s)	118, 367, 424, 893
BsmAI	GTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	776, 788
BsnI	GGCC	5 cut(s)	272, 299, 399, 494, 560
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	925
Bsp143I	GATC	4 cut(s)	308, 370, 582, 624
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	206, 692
BspANI	GGCC	5 cut(s)	272, 299, 399, 494, 560
BspCNI	CTCAG	2 cut(s)	223, 1003
BspEI	TCCGGA	1 cut(s)	925
BspHI	TCATGA	3 cut(s)	813, 829, 1098
BspLI	GGNNCC	4 cut(s)	346, 385, 391, 446
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	3 cut(s)	316, 378, 632
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	237, 997
BssMI	GATC	4 cut(s)	308, 370, 582, 624
Bst2UI	CCWGG	3 cut(s)	557, 753, 999
Bst4CI	ACNGT	3 cut(s)	195, 872, 946
Bst6I	CTCTTC	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	172, 274, 968
BstDEI	CTNAG	3 cut(s)	210, 260, 990
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	46, 261, 950
BstKTI	GATC	4 cut(s)	311, 373, 585, 627
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	4 cut(s)	308, 370, 582, 624
BstNI	CCWGG	3 cut(s)	557, 753, 999
BstNSI	RCATGY	2 cut(s)	767, 781
BstSCI	CCNGG	6 cut(s)	237, 299, 386, 555, 751, 997
BsuRI	GGCC	5 cut(s)	272, 299, 399, 494, 560
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	3 cut(s)	46, 261, 950
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	3 cut(s)	172, 274, 968
CciI	TCATGA	3 cut(s)	813, 829, 1098
Cfr13I	GGNCC	8 cut(s)	250, 298, 303, 344, 390, 398, 492, 1014
CpoI	CGGWCCG	1 cut(s)	303
Csp6I	GTAC	4 cut(s)	517, 688, 942, 1027
CspI	CGGWCCG	1 cut(s)	303
CviAII	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
CviQI	GTAC	4 cut(s)	517, 688, 942, 1027
DdeI	CTNAG	3 cut(s)	210, 260, 990
DpnI	GATC	4 cut(s)	310, 372, 584, 626
DpnII	GATC	4 cut(s)	308, 370, 582, 624
DraI	TTTAAA	1 cut(s)	784
DriI	GACNNNNNGTC	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	60
Eco47I	GGWCC	5 cut(s)	250, 303, 344, 390, 1014
Eco57I	CTGAAG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	2 cut(s)	344, 492
EcoRI	GAATTC	1 cut(s)	477
EcoRII	CCWGG	3 cut(s)	555, 751, 997
FaeI	CATG	8 cut(s)	422, 436, 565, 767, 781, 817, 833, 1102
FaqI	GGGAC	2 cut(s)	776, 788
FatI	CATG	8 cut(s)	418, 432, 561, 763, 777, 813, 829, 1098
FauI	CCCGC	1 cut(s)	699
FauNDI	CATATG	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	3 cut(s)	33, 268, 937
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	2 cut(s)	731, 888
GluI	GCNGC	1 cut(s)	207
GsaI	CCCAGC	1 cut(s)	1096
HaeIII	GGCC	5 cut(s)	272, 299, 399, 494, 560
HapII	CCGG	6 cut(s)	239, 253, 301, 306, 387, 926
Hin1II	CATG	8 cut(s)	422, 436, 565, 767, 781, 817, 833, 1102
HinfI	GANTC	4 cut(s)	29, 182, 823, 914
HpaII	CCGG	6 cut(s)	239, 253, 301, 306, 387, 926
HphI	GGTGA	2 cut(s)	183, 670
Hpy166II	GTNNAC	1 cut(s)	987
Hpy188I	TCNGA	5 cut(s)	117, 126, 199, 313, 993
Hpy8I	GTNNAC	1 cut(s)	987
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	3 cut(s)	122, 464, 753
HpyCH4III	ACNGT	3 cut(s)	195, 872, 946
HpyCH4IV	ACGT	3 cut(s)	91, 147, 726
HpyCH4V	TGCA	4 cut(s)	170, 341, 354, 415
HpyF3I	CTNAG	3 cut(s)	210, 260, 990
HpySE526I	ACGT	3 cut(s)	91, 147, 726
Hsp92II	CATG	8 cut(s)	422, 436, 565, 767, 781, 817, 833, 1102
Kpn2I	TCCGGA	1 cut(s)	925
Kzo9I	GATC	4 cut(s)	308, 370, 582, 624
LmnI	GCTCC	4 cut(s)	6, 219, 745, 760
LweI	GCATC	5 cut(s)	246, 448, 714, 727, 793
MaeI	CTAG	2 cut(s)	731, 888
MaeII	ACGT	3 cut(s)	91, 147, 726
MaeIII	GTNAC	3 cut(s)	183, 661, 946
MalI	GATC	4 cut(s)	310, 372, 584, 626
MboI	GATC	4 cut(s)	308, 370, 582, 624
MboII	GAAGA	7 cut(s)	71, 74, 77, 601, 604, 818, 914
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	6 cut(s)	24, 356, 477, 654, 709, 918
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	23, 191
MmeI	TCCRAC	3 cut(s)	222, 255, 978
Mox20I	TGGCCA	1 cut(s)	272
MroI	TCCGGA	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	918
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	5 cut(s)	486, 669, 699, 783, 1044
MslI	CAYNNNNRTG	1 cut(s)	453
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	1092
MspI	CCGG	6 cut(s)	239, 253, 301, 306, 387, 926
MspR9I	CCNGG	6 cut(s)	239, 301, 388, 557, 753, 999
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	3 cut(s)	557, 753, 999
NciI	CCSGG	3 cut(s)	239, 301, 388
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	4 cut(s)	308, 370, 582, 624
NlaIII	CATG	8 cut(s)	422, 436, 565, 767, 781, 817, 833, 1102
NlaIV	GGNNCC	4 cut(s)	346, 385, 391, 446
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	183
NspI	RCATGY	2 cut(s)	767, 781
PagI	TCATGA	3 cut(s)	813, 829, 1098
PciI	ACATGT	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	918
PfeI	GAWTC	2 cut(s)	823, 914
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	23, 190
PpsI	GAGTC	2 cut(s)	23, 190
PpuMI	RGGWCCY	1 cut(s)	344
PscI	ACATGT	1 cut(s)	777
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	3 cut(s)	555, 751, 997
PspFI	CCCAGC	1 cut(s)	1092
PspGI	CCWGG	3 cut(s)	555, 751, 997
PspN4I	GGNNCC	4 cut(s)	346, 385, 391, 446
PspPI	GGNCC	8 cut(s)	250, 298, 303, 344, 390, 398, 492, 1014
PspPPI	RGGWCCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	1092
RsaI	GTAC	4 cut(s)	518, 689, 943, 1028
RsaNI	GTAC	4 cut(s)	517, 688, 942, 1027
RseI	CAYNNNNRTG	1 cut(s)	453
Rsr2I	CGGWCCG	1 cut(s)	303
RsrII	CGGWCCG	1 cut(s)	303
SaqAI	TTAA	5 cut(s)	486, 669, 699, 783, 1044
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	4 cut(s)	308, 370, 582, 624
Sau96I	GGNCC	8 cut(s)	250, 298, 303, 344, 390, 398, 492, 1014
SchI	GAGTC	2 cut(s)	23, 191
ScrFI	CCNGG	6 cut(s)	239, 301, 388, 557, 753, 999
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	5 cut(s)	246, 448, 714, 727, 793
SinI	GGWCC	5 cut(s)	250, 303, 344, 390, 1014
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	863
SmoI	CTYRAG	1 cut(s)	863
Sse9I	AATT	6 cut(s)	24, 356, 477, 654, 709, 918
SsiI	CCGC	2 cut(s)	206, 692
SspMI	CTAG	2 cut(s)	731, 888
StyD4I	CCNGG	6 cut(s)	237, 299, 386, 555, 751, 997
TaaI	ACNGT	3 cut(s)	195, 872, 946
TaiI	ACGT	3 cut(s)	94, 150, 729
TaqI	TCGA	2 cut(s)	600, 1060
TasI	AATT	6 cut(s)	24, 356, 477, 654, 709, 918
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	2 cut(s)	823, 914
Tru1I	TTAA	5 cut(s)	486, 669, 699, 783, 1044
Tru9I	TTAA	5 cut(s)	486, 669, 699, 783, 1044
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	6 cut(s)	421, 802, 818, 830, 858, 1115
TspGWI	ACGGA	2 cut(s)	382, 393
VpaK11BI	GGWCC	5 cut(s)	250, 303, 344, 390, 1014
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	356, 477
XceI	RCATGY	2 cut(s)	767, 781
XmnI	GAANNNNTTC	1 cut(s)	918
XspI	CTAG	2 cut(s)	731, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.