Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Forward (+)

29135904 .. 29137640

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCAAACCATCTTCAAGATCCCTTAACCACTTACCCTAAACCGGGTTTAACCAAAGAAGAACAAGAAATCGACGAGAAAATGGTGAGCTTGCAAGCGGAGAGTATAGTCAACGCCGTGGCTTTCCCCATGGTTCTCAAAGCCGCCTTAGAGCTTGGAGTCATTGATACGATCGCTGCTGCTAGCAACGGCACGTGGCTCTCACCGTCTGAGATAGCCGTTAGTCTCCCAAACAAACCCACTAACCCGGAGGCGCCGGTATTGCTGGACCGGATGCTGCGGTTACTTGTAAGCCACTCGATCTTGAAGTGTTGTATGGTTGAAAGCAGAGAAAATGGTCAAACCGGAAAGATCGAGAGAGTATATGCAGCTGAACCGATTTGCAAGTACTTCTTGAAAGATAGTGACGGCTCTGGTTCTCTCTCGTCCTTGTTATTGTTGCTCCATAGCCAAGTCATTCTCAAAACATGGACAAATCTCAAGGATGTGATACTAGAAGGAAAAGATGCATTCAGCTCTGCCCACGACATGAGACTTTTCGAATATATTAGTTCGGATGACCAGTTCTCTAAGTTGTTTCACCGCGCAATGTCGGAATCTTCCACAATGGTCATGAAGAAGGTTCTAGAAGAATACAGAGGATTTGAAGATGTTAACACTTTGGTGGATGTAGGAGGAGGTATCGGCACCATATTAGGTCTCATCACTTCCAAGTATCCTCATATCAAAGGTGTTAATTTCGACTTAGCTCAAGTTTTAACCCAAGCTCCTTTTTATCCAGGAGTCAAGCATGTCTCCGGAGACATGTTTATTGAAGTTCCAAAAGGAGATGCCATCTTTATGAAATGGATACTACATGATTGGGGAGACGAGGATTGTATAAAGATTCTGAAAAATTGTTGGAAAAGTCTACCGGAAAAAGGTAAAGTGATCATTGTAGAGATGATTACACCAATGGAACCAAAGCCTAATGACTTTTCGTGTAACACCGTGTTGGGCATGGACTTGTTGATGTTAACACAATGCTCTGGTGGTAAAGAGCGATCTCTTTCGCAGTTCGAGAATTTAGCGTTTGCGTCAGGCTTTCTTCTATGTGAAATCATATGTCTTTCTTATTCATATTCTGTTATCGAATTCCACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

381

Amino Acids

42.33

Weight (kDa)

5.29

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	36 - 134	5.7e-17	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	157 - 259	3e-26	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	253, 686
AccI	GTMKAC	1 cut(s)	910
AccII	CGCG	1 cut(s)	585
AccIII	TCCGGA	1 cut(s)	797
AciI	CCGC	4 cut(s)	98, 144, 280, 583
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	1063, 1133
AcvI	CACGTG	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	43, 44, 920
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	6 cut(s)	17, 307, 323, 397, 647, 815
AjnI	CCWGG	1 cut(s)	778
AleI	CACNNNNGTG	1 cut(s)	662
AloI	GAACNNNNNNTCC	2 cut(s)	548, 580
AluBI	AGCT	6 cut(s)	90, 154, 371, 516, 749, 767
AluI	AGCT	6 cut(s)	90, 154, 371, 516, 749, 767
Alw26I	GTCTC	6 cut(s)	230, 526, 704, 795, 799, 861
AlwI	GGATC	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	797
ApeKI	GCWGC	4 cut(s)	176, 179, 277, 368
ApoI	RAATTY	2 cut(s)	1063, 1133
AspLEI	GCGC	2 cut(s)	256, 587
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	2 cut(s)	45, 248
AsuHPI	GGTGA	3 cut(s)	97, 195, 572
AsuII	TTCGAA	1 cut(s)	540
AsuNHI	GCTAGC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	2 cut(s)	253, 686
BbrPI	CACGTG	1 cut(s)	195
BbvI	GCAGC	4 cut(s)	163, 166, 264, 380
BccI	CCATC	2 cut(s)	18, 842
BceAI	ACGGC	4 cut(s)	101, 203, 205, 424
BciT130I	CCWGG	1 cut(s)	780
BciVI	GTATCC	2 cut(s)	726, 843
BclI	TGATCA	1 cut(s)	930
BcnI	CCSGG	2 cut(s)	45, 248
BcoDI	GTCTC	6 cut(s)	230, 526, 704, 795, 799, 861
BfaI	CTAG	3 cut(s)	183, 494, 626
BfoI	RGCGCY	1 cut(s)	257
BfuI	GTATCC	2 cut(s)	726, 843
BisI	GCNGC	5 cut(s)	144, 177, 180, 278, 369
BlsI	GCNGC	5 cut(s)	145, 178, 181, 279, 370
BmcAI	AGTACT	1 cut(s)	389
Bme1390I	CCNGG	3 cut(s)	45, 248, 780
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	3 cut(s)	255, 688, 960
BmrFI	CCNGG	3 cut(s)	45, 248, 780
BmsI	GCATC	3 cut(s)	264, 496, 820
BmtI	GCTAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	2 cut(s)	464, 735
BpuMI	CCSGG	2 cut(s)	45, 248
BsaAI	YACGTR	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	2 cut(s)	117, 129
BsaWI	WCCGGW	4 cut(s)	270, 344, 797, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 44, 920
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	594
BseAI	TCCGGA	1 cut(s)	797
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	117, 129
BseGI	GGATG	4 cut(s)	279, 490, 562, 673
BseLI	CCNNNNNNNGG	3 cut(s)	43, 44, 920
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	690
BseXI	GCAGC	4 cut(s)	163, 166, 264, 380
Bsh1236I	CGCG	1 cut(s)	585
Bsh1285I	CGRYCG	1 cut(s)	174
BshNI	GGYRCC	2 cut(s)	253, 686
BsiEI	CGRYCG	1 cut(s)	174
BsiSI	CCGG	7 cut(s)	44, 248, 257, 271, 345, 798, 914
BslI	CCNNNNNNNGG	3 cut(s)	43, 44, 920
BsmAI	GTCTC	6 cut(s)	230, 526, 704, 795, 799, 861
BsmBI	CGTCTC	1 cut(s)	861
BsmI	GAATGC	1 cut(s)	509
Bso31I	GGTCTC	1 cut(s)	704
Bsp119I	TTCGAA	1 cut(s)	540
Bsp13I	TCCGGA	1 cut(s)	797
Bsp143I	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	4 cut(s)	98, 144, 280, 583
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	255, 688, 960
BspOI	GCTAGC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	540
BspT107I	GGYRCC	2 cut(s)	253, 686
BspTNI	GGTCTC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	117, 129
BssMI	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
BssNI	GRCGYC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	2 cut(s)	207, 991
BstACI	GRCGYC	1 cut(s)	254
BstBAI	YACGTR	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	3 cut(s)	92, 96, 184
BstDEI	CTNAG	4 cut(s)	148, 210, 570, 745
BstDSI	CCRYGG	2 cut(s)	117, 129
BstF5I	GGATG	4 cut(s)	279, 490, 562, 673
BstFNI	CGCG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	256, 587
BstKTI	GATC	6 cut(s)	22, 174, 303, 354, 933, 1046
BstMAI	GTCTC	6 cut(s)	230, 526, 704, 795, 799, 861
BstMBI	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	2 cut(s)	794, 808
BstSCI	CCNGG	3 cut(s)	43, 246, 778
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	4 cut(s)	163, 166, 264, 380
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuI	GTATCC	2 cut(s)	726, 843
BtgI	CCRYGG	2 cut(s)	117, 129
BtsCI	GGATG	4 cut(s)	279, 490, 562, 673
Cac8I	GCNNGC	3 cut(s)	92, 96, 184
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	2 cut(s)	256, 587
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	1065
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	8 cut(s)	130, 468, 529, 613, 791, 805, 857, 1000
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	4 cut(s)	148, 210, 570, 745
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	6 cut(s)	21, 173, 302, 353, 932, 1045
DpnII	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
Eco130I	CCWWGG	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	268
Eco72I	CACGTG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	1133
EcoRII	CCWGG	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	511
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	861
FaeI	CATG	8 cut(s)	133, 471, 532, 616, 794, 808, 860, 1003
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	8 cut(s)	129, 467, 528, 612, 790, 804, 856, 999
FauNDI	CATATG	1 cut(s)	1103
FbaI	TGATCA	1 cut(s)	930
FblI	GTMKAC	1 cut(s)	910
Fnu4HI	GCNGC	5 cut(s)	144, 177, 180, 278, 369
FokI	GGATG	4 cut(s)	286, 497, 569, 680
Fsp4HI	GCNGC	5 cut(s)	144, 177, 180, 278, 369
FspBI	CTAG	3 cut(s)	183, 494, 626
GlaI	GCGC	2 cut(s)	255, 586
GluI	GCNGC	5 cut(s)	144, 177, 180, 278, 369
HaeII	RGCGCY	1 cut(s)	257
HapII	CCGG	7 cut(s)	44, 248, 257, 271, 345, 798, 914
HgaI	GACGC	1 cut(s)	1065
HhaI	GCGC	2 cut(s)	256, 587
Hin1I	GRCGYC	1 cut(s)	254
Hin1II	CATG	8 cut(s)	133, 471, 532, 616, 794, 808, 860, 1003
Hin6I	GCGC	2 cut(s)	254, 585
HinP1I	GCGC	2 cut(s)	254, 585
HincII	GTYRAC	3 cut(s)	112, 655, 1017
HindII	GTYRAC	3 cut(s)	112, 655, 1017
HinfI	GANTC	4 cut(s)	159, 596, 783, 886
HpaI	GTTAAC	2 cut(s)	655, 1017
HpaII	CCGG	7 cut(s)	44, 248, 257, 271, 345, 798, 914
HphI	GGTGA	3 cut(s)	97, 195, 572
Hpy166II	GTNNAC	4 cut(s)	112, 655, 911, 1017
Hpy188I	TCNGA	4 cut(s)	211, 556, 595, 891
Hpy188III	TCNNGA	8 cut(s)	17, 304, 355, 394, 613, 626, 798, 1060
Hpy8I	GTNNAC	4 cut(s)	112, 655, 911, 1017
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	491, 613
HpyCH4III	ACNGT	2 cut(s)	207, 991
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	4 cut(s)	94, 368, 384, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	4 cut(s)	148, 210, 570, 745
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	254
Hsp92II	CATG	8 cut(s)	133, 471, 532, 616, 794, 808, 860, 1003
HspAI	GCGC	2 cut(s)	254, 585
KasI	GGCGCC	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	797
Ksp22I	TGATCA	1 cut(s)	930
KspAI	GTTAAC	2 cut(s)	655, 1017
Kzo9I	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
LmnI	GCTCC	2 cut(s)	447, 772
Lsp1109I	GCAGC	4 cut(s)	163, 166, 264, 380
LweI	GCATC	3 cut(s)	264, 496, 820
MaeI	CTAG	3 cut(s)	183, 494, 626
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	3 cut(s)	282, 404, 983
MalI	GATC	6 cut(s)	21, 173, 302, 353, 932, 1045
MboI	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
MboII	GAAGA	7 cut(s)	5, 71, 591, 628, 641, 659, 1079
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	4 cut(s)	736, 895, 1063, 1133
Mly113I	GGCGCC	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	168, 792
MmeI	TCCRAC	2 cut(s)	573, 881
MnlI	CCTC	6 cut(s)	244, 632, 668, 671, 729, 865
Mph1103I	ATGCAT	1 cut(s)	511
MroI	TCCGGA	1 cut(s)	797
MseI	TTAA	6 cut(s)	26, 50, 654, 735, 758, 1016
MslI	CAYNNNNRTG	2 cut(s)	662, 839
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	7 cut(s)	44, 248, 257, 271, 345, 798, 914
MspR9I	CCNGG	3 cut(s)	45, 248, 780
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	780
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	262
NarI	GGCGCC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	45, 248
NcoI	CCATGG	1 cut(s)	129
NdeI	CATATG	1 cut(s)	1103
NdeII	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	8 cut(s)	133, 471, 532, 616, 794, 808, 860, 1003
NlaIV	GGNNCC	3 cut(s)	255, 688, 960
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	2 cut(s)	794, 808
NspV	TTCGAA	1 cut(s)	540
OliI	CACNNNNGTG	1 cut(s)	662
PagI	TCATGA	1 cut(s)	612
PciI	ACATGT	1 cut(s)	804
PctI	GAATGC	1 cut(s)	509
PfeI	GAWTC	2 cut(s)	596, 886
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	5 cut(s)	145, 178, 181, 279, 370
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	2 cut(s)	167, 791
PluTI	GGCGCC	1 cut(s)	257
PmaCI	CACGTG	1 cut(s)	195
PmlI	CACGTG	1 cut(s)	195
PpsI	GAGTC	2 cut(s)	167, 791
Ppu21I	YACGTR	1 cut(s)	195
PscI	ACATGT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	778
PspCI	CACGTG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	3 cut(s)	255, 688, 960
PspPI	GGNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	2 cut(s)	662, 839
SaqAI	TTAA	6 cut(s)	26, 50, 654, 735, 758, 1016
SatI	GCNGC	5 cut(s)	144, 177, 180, 278, 369
Sau3AI	GATC	6 cut(s)	19, 171, 300, 351, 930, 1043
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	389
SchI	GAGTC	2 cut(s)	168, 792
ScrFI	CCNGG	3 cut(s)	45, 248, 780
SfaNI	GCATC	3 cut(s)	264, 496, 820
SfoI	GGCGCC	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	540
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	2 cut(s)	662, 839
SmlI	CTYRAG	2 cut(s)	479, 750
SmoI	CTYRAG	2 cut(s)	479, 750
Sse9I	AATT	4 cut(s)	736, 895, 1063, 1133
SsiI	CCGC	4 cut(s)	98, 144, 280, 583
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	3 cut(s)	183, 494, 626
StyD4I	CCNGG	3 cut(s)	43, 246, 778
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	207, 991
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	7 cut(s)	72, 299, 354, 540, 741, 1059, 1131
TasI	AATT	4 cut(s)	736, 895, 1063, 1133
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	596, 886
Tru1I	TTAA	6 cut(s)	26, 50, 654, 735, 758, 1016
Tru9I	TTAA	6 cut(s)	26, 50, 654, 735, 758, 1016
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	4 cut(s)	176, 179, 277, 368
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	629, 857, 1107
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	1063, 1133
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	2 cut(s)	794, 808
XmiI	GTMKAC	1 cut(s)	910
XspI	CTAG	3 cut(s)	183, 494, 626
ZrmI	AGTACT	1 cut(s)	389
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.