Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Forward (+)

12340321 .. 12342254

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011740

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGTAGCACTAGTGCTCAGACAATTGACTCAACTCCAATGTCTCAGCAACGAGCAGAAGAAGAAGAAGAAGAAGAAGAAGAACTGGGCAAACAGGCCATACGTTTAGCCAATGTCGTGATCCTTCCGATGGTTCTAAAGTCGGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGCGCGTCACTCTCACCATCCGACATTGCGGCTCAGCTCCCTACCAAGAACTCCAACGCCCTGGTTTTTCTGGACCGGATGCTTAGGCTCTTGTCCAGCCACTCTATACTCAAATGCTCGGCCCGGACTGGATCAGATGGGCAGGTAGAGAGGTTGTATAGTGCAGGACCCATATGCAAATTCCTCGTCAAGGATCAAAATGGAGGAACTGGGGGGTCCGTTGGTCCTCTATTTCTCTTGCAGAATGACAAGGTTTTCATGGAAAGCTGGGCCCATAGGATGACAGCATTTGAGTACCCAGAAATAGATGACAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACTACATTGATCTTGGAGAAGATGCTTGATGTTTATAAAGGTGGAATTTGTGTCACCCTTAATCTTATCACCAACAAGTACCCCCACATTAAGGGCATCAATTTCGATTTGCCACACGTCCTAGCTGATGCTGATGCTCCTTCTTATCCAGGTGTAGAGCATGTTAGGGGAGACATGTTTGAAAGTGTCCCACAAGGAGATGCTATATTCATGAAGTGGATTCTTCATGATTGGAGTGATGAACATTGTTTGACACTACTCAAGAACTGCTGTAAATCTCTCCCTAGCTCTGGAAAAGTGATCTTTGTGGAATCAATTCTTCCTGAAGTACCTGATAGTAGCGTTACATCCAACATTGTCTGCGAGGACGATTTACTAATGTTTACTCAGAACCCAGGAGGTAAAGAGAGGACCAAAAAACAGTACGAGGCCTTAGCACTGAACTCTGGATTTTCTCGATTGGAAGTGATTTGCTCTGCTTACAACAGCTGGGTCATGGAGTTCCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

351

Amino Acids

38.82

Weight (kDa)

5.05

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	35 - 128	1.8e-17	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	153 - 332	1.3e-46	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
Acc36I	ACCTGC	1 cut(s)	322
AccII	CGCG	1 cut(s)	194
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	3 cut(s)	115, 328, 390
AcsI	RAATTY	2 cut(s)	368, 585
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	4 cut(s)	485, 620, 870, 965
AfiI	CCNNNNNNNGG	4 cut(s)	130, 379, 631, 830
AflIII	ACRYGT	2 cut(s)	655, 714
AgsI	TTSAA	4 cut(s)	152, 508, 520, 722
AhdI	GACNNNNNGTC	1 cut(s)	193
AhlI	ACTAGT	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	4 cut(s)	249, 522, 688, 934
AluBI	AGCT	5 cut(s)	226, 456, 665, 828, 1029
AluI	AGCT	5 cut(s)	226, 456, 665, 828, 1029
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	48, 705
AlwI	GGATC	3 cut(s)	115, 328, 390
AoxI	GGCC	5 cut(s)	96, 309, 459, 525, 969
ApaI	GGGCCC	1 cut(s)	463
ApoI	RAATTY	2 cut(s)	368, 585
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
Asp700I	GAANNNNTTC	1 cut(s)	855
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	8 cut(s)	262, 310, 356, 405, 413, 459, 460, 951
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	195, 586, 601
AvaII	GGWCC	5 cut(s)	262, 356, 405, 413, 951
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	463
Bbv12I	GWGCWC	1 cut(s)	19
BccI	CCATC	3 cut(s)	124, 214, 320
BceAI	ACGGC	1 cut(s)	205
BcgI	CGANNNNNNTGC	4 cut(s)	355, 389, 625, 659
BciT130I	CCWGG	4 cut(s)	251, 524, 690, 936
BcnI	CCSGG	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	48, 705
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	3 cut(s)	12, 662, 825
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	219
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	5 cut(s)	251, 313, 524, 690, 936
Bme18I	GGWCC	5 cut(s)	262, 356, 405, 413, 951
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	8 cut(s)	262, 310, 356, 405, 413, 459, 460, 951
BmiI	GGNNCC	3 cut(s)	358, 406, 461
BmrFI	CCNGG	5 cut(s)	251, 313, 524, 690, 936
BmrI	ACTGGG	2 cut(s)	95, 408
BmsI	GCATC	6 cut(s)	258, 552, 645, 658, 664, 730
BmuI	ACTGGG	2 cut(s)	95, 408
Bpu10I	CCTNAGC	2 cut(s)	272, 973
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	249, 934
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 379, 631, 830
Bse1I	ACTGG	3 cut(s)	90, 322, 403
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	4 cut(s)	251, 524, 690, 936
BseDI	CCNNGG	2 cut(s)	249, 934
BseGI	GGATG	4 cut(s)	206, 273, 474, 887
BseLI	CCNNNNNNNGG	4 cut(s)	130, 379, 631, 830
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	4 cut(s)	32, 59, 236, 941
BseNI	ACTGG	3 cut(s)	90, 322, 403
BseSI	GKGCMC	1 cut(s)	463
BseYI	CCCAGC	2 cut(s)	456, 1029
BsgI	GTGCAG	2 cut(s)	201, 372
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	5 cut(s)	98, 311, 461, 527, 971
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	265, 313
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	4 cut(s)	130, 379, 631, 830
BsmAI	GTCTC	2 cut(s)	48, 705
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	5 cut(s)	98, 311, 461, 527, 971
Bsp120I	GGGCCC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	19, 463
Bsp143I	GATC	5 cut(s)	120, 320, 382, 549, 840
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	5 cut(s)	98, 311, 461, 527, 971
BspCNI	CTCAG	4 cut(s)	31, 58, 235, 940
BspFNI	CGCG	1 cut(s)	194
BspHI	TCATGA	2 cut(s)	750, 766
BspLI	GGNNCC	3 cut(s)	358, 406, 461
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	3 cut(s)	115, 328, 390
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	3 cut(s)	90, 322, 403
BssECI	CCNNGG	2 cut(s)	249, 934
BssMI	GATC	5 cut(s)	120, 320, 382, 549, 840
Bst2UI	CCWGG	4 cut(s)	251, 524, 690, 936
Bst4CI	ACNGT	1 cut(s)	963
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	6 cut(s)	18, 45, 222, 272, 927, 973
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	206, 273, 474, 887
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	5 cut(s)	123, 323, 385, 552, 843
BstMAI	GTCTC	2 cut(s)	48, 705
BstMBI	GATC	5 cut(s)	120, 320, 382, 549, 840
BstNI	CCWGG	4 cut(s)	251, 524, 690, 936
BstNSI	RCATGY	2 cut(s)	704, 718
BstSCI	CCNGG	5 cut(s)	249, 311, 522, 688, 934
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	5 cut(s)	98, 311, 461, 527, 971
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	4 cut(s)	206, 273, 474, 887
BtsIMutI	CAGTG	1 cut(s)	977
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	184
CciI	TCATGA	2 cut(s)	750, 766
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	8 cut(s)	262, 310, 356, 405, 413, 459, 460, 951
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	4 cut(s)	484, 619, 869, 964
CviAII	CATG	7 cut(s)	448, 529, 701, 715, 751, 767, 1036
CviQI	GTAC	4 cut(s)	484, 619, 869, 964
DdeI	CTNAG	6 cut(s)	18, 45, 222, 272, 927, 973
DpnI	GATC	5 cut(s)	122, 322, 384, 551, 842
DpnII	GATC	5 cut(s)	120, 320, 382, 549, 840
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	971
Eco24I	GRGCYC	1 cut(s)	463
Eco47I	GGWCC	5 cut(s)	262, 356, 405, 413, 951
Eco57I	CTGAAG	1 cut(s)	885
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	4 cut(s)	249, 522, 688, 934
EcoT38I	GRGCYC	1 cut(s)	463
FaeI	CATG	7 cut(s)	451, 532, 704, 718, 754, 770, 1039
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	7 cut(s)	447, 528, 700, 714, 750, 766, 1035
FauNDI	CATATG	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	4 cut(s)	193, 280, 481, 874
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	3 cut(s)	12, 662, 825
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	2 cut(s)	460, 1033
HaeIII	GGCC	5 cut(s)	98, 311, 461, 527, 971
HapII	CCGG	2 cut(s)	265, 313
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	7 cut(s)	451, 532, 704, 718, 754, 770, 1039
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	3 cut(s)	29, 760, 851
HpaII	CCGG	2 cut(s)	265, 313
HphI	GGTGA	3 cut(s)	195, 586, 601
Hpy166II	GTNNAC	1 cut(s)	924
Hpy188I	TCNGA	5 cut(s)	21, 129, 211, 325, 930
Hpy8I	GTNNAC	1 cut(s)	924
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	134, 690
HpyCH4III	ACNGT	1 cut(s)	963
HpyCH4IV	ACGT	3 cut(s)	103, 159, 657
HpyCH4V	TGCA	4 cut(s)	182, 353, 366, 430
HpyF3I	CTNAG	6 cut(s)	18, 45, 222, 272, 927, 973
HpySE526I	ACGT	3 cut(s)	103, 159, 657
Hsp92II	CATG	7 cut(s)	451, 532, 704, 718, 754, 770, 1039
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	120, 320, 382, 549, 840
LmnI	GCTCC	2 cut(s)	231, 682
LweI	GCATC	6 cut(s)	258, 552, 645, 658, 664, 730
MaeI	CTAG	3 cut(s)	12, 662, 825
MaeII	ACGT	3 cut(s)	103, 159, 657
MaeIII	GTNAC	3 cut(s)	195, 592, 883
MalI	GATC	5 cut(s)	122, 322, 384, 551, 842
MboI	GATC	5 cut(s)	120, 320, 382, 549, 840
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	19, 463
MluCI	AATT	5 cut(s)	24, 368, 585, 640, 855
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	3 cut(s)	234, 267, 915
MnlI	CCTC	8 cut(s)	333, 383, 386, 426, 898, 932, 942, 961
MroXI	GAANNNNTTC	1 cut(s)	855
MseI	TTAA	2 cut(s)	600, 630
MspA1I	CMGCKG	1 cut(s)	1029
MspI	CCGG	2 cut(s)	265, 313
MspR9I	CCNGG	5 cut(s)	251, 313, 524, 690, 936
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	4 cut(s)	251, 524, 690, 936
MvnI	CGCG	1 cut(s)	194
NciI	CCSGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	362
NdeII	GATC	5 cut(s)	120, 320, 382, 549, 840
NlaIII	CATG	7 cut(s)	451, 532, 704, 718, 754, 770, 1039
NlaIV	GGNNCC	3 cut(s)	358, 406, 461
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	2 cut(s)	195, 592
NspI	RCATGY	2 cut(s)	704, 718
PagI	TCATGA	2 cut(s)	750, 766
PceI	AGGCCT	1 cut(s)	971
PciI	ACATGT	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	855
PfeI	GAWTC	2 cut(s)	760, 851
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PpuMI	RGGWCCY	1 cut(s)	356
PscI	ACATGT	1 cut(s)	714
PsiI	TTATAA	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	4 cut(s)	249, 522, 688, 934
PspFI	CCCAGC	2 cut(s)	456, 1029
PspGI	CCWGG	4 cut(s)	249, 522, 688, 934
PspN4I	GGNNCC	3 cut(s)	358, 406, 461
PspOMI	GGGCCC	1 cut(s)	459
PspPI	GGNCC	8 cut(s)	262, 310, 356, 405, 413, 459, 460, 951
PspPPI	RGGWCCY	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	1029
RsaI	GTAC	4 cut(s)	485, 620, 870, 965
RsaNI	GTAC	4 cut(s)	484, 619, 869, 964
SaqAI	TTAA	2 cut(s)	600, 630
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	5 cut(s)	120, 320, 382, 549, 840
Sau96I	GGNCC	8 cut(s)	262, 310, 356, 405, 413, 459, 460, 951
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	5 cut(s)	251, 313, 524, 690, 936
SduI	GDGCHC	2 cut(s)	19, 463
SfaNI	GCATC	6 cut(s)	258, 552, 645, 658, 664, 730
SinI	GGWCC	5 cut(s)	262, 356, 405, 413, 951
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	5 cut(s)	24, 368, 585, 640, 855
SseBI	AGGCCT	1 cut(s)	971
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	3 cut(s)	12, 662, 825
StuI	AGGCCT	1 cut(s)	971
StyD4I	CCNGG	5 cut(s)	249, 311, 522, 688, 934
TaaI	ACNGT	1 cut(s)	963
TaiI	ACGT	3 cut(s)	106, 162, 660
TaqI	TCGA	2 cut(s)	645, 997
TasI	AATT	5 cut(s)	24, 368, 585, 640, 855
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	760, 851
Tru1I	TTAA	2 cut(s)	600, 630
Tru9I	TTAA	2 cut(s)	600, 630
TscAI	CASTG	1 cut(s)	984
TseFI	GTSAC	2 cut(s)	195, 592
Tsp45I	GTSAC	2 cut(s)	195, 592
TspDTI	ATGAA	5 cut(s)	436, 739, 755, 767, 795
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	984
VpaK11BI	GGWCC	5 cut(s)	262, 356, 405, 413, 951
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	368, 585
XceI	RCATGY	2 cut(s)	704, 718
XmnI	GAANNNNTTC	1 cut(s)	855
XspI	CTAG	3 cut(s)	12, 662, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.