Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Forward (+)

29130375 .. 29132272

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGACAAACCATCTTCAAGATCCCTTACCTACTTACCCAAAACCGGTTTTAACCAAAGAAGAACAAGAAGTGGACGAGAAAATGGTAAGCTTGCAAGCAGAGAGTATCGTGAACACCGTGGCTTTCCCTATGGTTCTCAAAGCCGCCTTCGAGCTTGGCGTCATCGACACCATCGCTGCTGCAGGAAACGACACGTGGCTCTCACCGTGTGAGATAGCGTGTAGTCTCCCAACCAAACCCACCAACCCGGAGGCGCCGGTGTTGCTTGACCGGATGCTGAGCTTACTTGTCAGCCACTCGATCTTGAAGTGCCGTATGATTGAAACCGGAGAGAACGGTCGAACCGGAAAGATCGAGAGGGTATATGCAGCCGAACCGGTTTGCAAGTATTTTTTGAGAGATAGTGATGGTACAGGATCTCTCGTGCCTCTGTTCATGTTGCTCCATACCCAAGTGTTTTTCAAGACTTGGACAAATCTTAAAGATGTGATACTAGAAGGAAGAGATGCATTCAACTCTGCCCACGGCATGAAAATCTTCGAATACATAAATTCGGATCAACCATTTGCTGAGTTGTTTAATCGTGCAATGTCGGAACCTTCCACCATGATCATGAAGAAGGTTCTAGACGTATATAGAGGATTTGAAGATGTTAACACTTTGGTGGATGTTGGAGGAGGAAATGGCACTGTTTTAGGTTTAGTCACTTCTAAGTATCCTCATATCAAAGGTGTTAATTTCGACTTAGCTCAAGTTTTAACCCAAGCTCCTTTTTATCCAGGAGTCGAGCATGTATCTGGAGACATGTTTGTAGAAGTTCCAAAGGGAGATGCCGTCTTTATGAAATGGATACTACATGATTGGGGAGACGAGGATTGTATAAAGATTCTGAAAAATTGTTGGAAAAGTCTACCGGAAAAAGGGAAGATTATTATTGTAGAGTTTGTTACACCAAAGGAACCAAAGGGTGGTGACTTATCTTCTAACACTGTCTTTGCCATGGACTTGTTGATGTTAACCCAATGCTCTGGTGGTAAAGAGAGATCTCTTTCACAGTTCGAGAATTTGGCGTTTGCGTCAGGTTTTCTTCGATGTGAAATCATTTGTCTTGCTTATTCGTATTCTGTTATCGAATTCCACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

381

Amino Acids

42.39

Weight (kDa)

5.23

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	37 - 133	5.4e-15	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	157 - 362	6.9e-60	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	968
AccI	GTMKAC	1 cut(s)	910
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	3 cut(s)	14, 424, 564
AcsI	RAATTY	3 cut(s)	550, 1063, 1133
AcvI	CACGTG	1 cut(s)	195
AcyI	GRCGYC	2 cut(s)	159, 254
AdeI	CACNNNGTG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	43, 920, 968
AflIII	ACRYGT	2 cut(s)	192, 804
AgeI	ACCGGT	2 cut(s)	43, 376
AgsI	TTSAA	6 cut(s)	17, 307, 323, 463, 514, 647
AjnI	CCWGG	1 cut(s)	778
AleI	CACNNNNGTG	1 cut(s)	662
AluBI	AGCT	5 cut(s)	90, 154, 282, 749, 767
AluI	AGCT	5 cut(s)	90, 154, 282, 749, 767
Alw26I	GTCTC	3 cut(s)	230, 795, 861
AlwI	GGATC	3 cut(s)	14, 424, 564
ApeKI	GCWGC	3 cut(s)	176, 179, 368
ApoI	RAATTY	3 cut(s)	550, 1063, 1133
AsiGI	ACCGGT	2 cut(s)	43, 376
Asp700I	GAANNNNTTC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	195, 983
AsuII	TTCGAA	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	422
BbrPI	CACGTG	1 cut(s)	195
BbvI	GCAGC	3 cut(s)	163, 166, 380
BccI	CCATC	3 cut(s)	18, 179, 401
BceAI	ACGGC	3 cut(s)	297, 541, 818
BciT130I	CCWGG	1 cut(s)	780
BciVI	GTATCC	2 cut(s)	726, 843
BclI	TGATCA	1 cut(s)	609
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	230, 795, 861
BfaI	CTAG	2 cut(s)	494, 626
BfmI	CTRYAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	257
BfuI	GTATCC	2 cut(s)	726, 843
BglII	AGATCT	1 cut(s)	1043
BisI	GCNGC	4 cut(s)	144, 177, 180, 369
BlpI	GCTNAGC	1 cut(s)	278
BlsI	GCNGC	4 cut(s)	145, 178, 181, 370
Bme1390I	CCNGG	2 cut(s)	248, 780
BmiI	GGNNCC	3 cut(s)	255, 597, 960
BmrFI	CCNGG	2 cut(s)	248, 780
BmsI	GCATC	3 cut(s)	264, 496, 820
BpmI	CTGGAG	1 cut(s)	819
Bpu1102I	GCTNAGC	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	195
BsaHI	GRCGYC	2 cut(s)	159, 254
BsaJI	CCNNGG	3 cut(s)	117, 523, 999
BsaWI	WCCGGW	6 cut(s)	43, 270, 326, 344, 376, 913
BsaXI	ACNNNNNCTCC	4 cut(s)	751, 781, 819, 849
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 920, 968
Bse118I	RCCGGY	3 cut(s)	43, 256, 376
Bse3DI	GCAATG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	3 cut(s)	117, 523, 999
BseGI	GGATG	2 cut(s)	279, 673
BseLI	CCNNNNNNNGG	3 cut(s)	43, 920, 968
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	269, 561
BseRI	GAGGAG	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	163, 166, 380
Bsh1285I	CGRYCG	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	253
BshTI	ACCGGT	2 cut(s)	43, 376
BsiEI	CGRYCG	1 cut(s)	340
BsiSI	CCGG	8 cut(s)	44, 248, 257, 271, 327, 345, 377, 914
BslI	CCNNNNNNNGG	3 cut(s)	43, 920, 968
BsmAI	GTCTC	3 cut(s)	230, 795, 861
BsmBI	CGTCTC	1 cut(s)	861
BsmI	GAATGC	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	540
Bsp143I	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
Bsp1720I	GCTNAGC	1 cut(s)	278
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	1 cut(s)	144
BspCNI	CTCAG	2 cut(s)	270, 562
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	255, 597, 960
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	3 cut(s)	14, 424, 564
BspT104I	TTCGAA	1 cut(s)	540
BspT107I	GGYRCC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	594
BsrFI	RCCGGY	3 cut(s)	43, 256, 376
BssAI	RCCGGY	3 cut(s)	43, 256, 376
BssECI	CCNNGG	3 cut(s)	117, 523, 999
BssMI	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
BssNI	GRCGYC	2 cut(s)	159, 254
BssSI	CACGAG	1 cut(s)	422
BssT1I	CCWWGG	1 cut(s)	999
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	6 cut(s)	118, 207, 338, 691, 991, 1056
Bst6I	CTCTTC	1 cut(s)	496
BstACI	GRCGYC	2 cut(s)	159, 254
BstBAI	YACGTR	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	92, 96
BstDEI	CTNAG	4 cut(s)	278, 570, 711, 745
BstDSI	CCRYGG	3 cut(s)	117, 523, 999
BstF5I	GGATG	2 cut(s)	279, 673
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	7 cut(s)	22, 303, 354, 419, 559, 612, 1046
BstMAI	GTCTC	3 cut(s)	230, 795, 861
BstMBI	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
BstMCI	CGRYCG	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	2 cut(s)	794, 808
BstSCI	CCNGG	2 cut(s)	246, 778
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	163, 166, 380
BstX2I	RGATCY	3 cut(s)	19, 416, 1043
BstXI	CCANNNNNNTGG	1 cut(s)	1028
BstYI	RGATCY	3 cut(s)	19, 416, 1043
BsuI	GTATCC	2 cut(s)	726, 843
BtgI	CCRYGG	3 cut(s)	117, 523, 999
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	279, 673
BtsIMutI	CAGTG	2 cut(s)	687, 987
Cac8I	GCNNGC	2 cut(s)	92, 96
CciI	TCATGA	1 cut(s)	612
CfoI	GCGC	1 cut(s)	256
Cfr10I	RCCGGY	3 cut(s)	43, 256, 376
CseI	GACGC	2 cut(s)	148, 1065
Csp6I	GTAC	1 cut(s)	411
CspAI	ACCGGT	2 cut(s)	43, 376
CviAII	CATG	8 cut(s)	436, 529, 607, 613, 791, 805, 857, 1000
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	4 cut(s)	278, 570, 711, 745
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	7 cut(s)	21, 302, 353, 418, 558, 611, 1045
DpnII	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
DraIII	CACNNNGTG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	999
Eco72I	CACGTG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	1133
EcoRII	CCWGG	1 cut(s)	778
EcoT14I	CCWWGG	1 cut(s)	999
EcoT22I	ATGCAT	1 cut(s)	511
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	999
Esp3I	CGTCTC	1 cut(s)	861
FaeI	CATG	8 cut(s)	439, 532, 610, 616, 794, 808, 860, 1003
FatI	CATG	8 cut(s)	435, 528, 606, 612, 790, 804, 856, 999
FbaI	TGATCA	1 cut(s)	609
FblI	GTMKAC	1 cut(s)	910
Fnu4HI	GCNGC	4 cut(s)	144, 177, 180, 369
FokI	GGATG	2 cut(s)	286, 680
Fsp4HI	GCNGC	4 cut(s)	144, 177, 180, 369
FspBI	CTAG	2 cut(s)	494, 626
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	4 cut(s)	144, 177, 180, 369
GsuI	CTGGAG	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	257
HapII	CCGG	8 cut(s)	44, 248, 257, 271, 327, 345, 377, 914
HgaI	GACGC	2 cut(s)	148, 1065
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	2 cut(s)	159, 254
Hin1II	CATG	8 cut(s)	439, 532, 610, 616, 794, 808, 860, 1003
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	2 cut(s)	655, 1017
HindII	GTYRAC	2 cut(s)	655, 1017
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	2 cut(s)	783, 886
HpaI	GTTAAC	2 cut(s)	655, 1017
HpaII	CCGG	8 cut(s)	44, 248, 257, 271, 327, 345, 377, 914
HphI	GGTGA	2 cut(s)	195, 983
Hpy166II	GTNNAC	5 cut(s)	73, 112, 655, 911, 1017
Hpy188I	TCNGA	3 cut(s)	556, 595, 891
Hpy188III	TCNNGA	9 cut(s)	17, 109, 304, 355, 463, 613, 626, 798, 1060
Hpy8I	GTNNAC	5 cut(s)	73, 112, 655, 911, 1017
HpyAV	CCTTC	4 cut(s)	157, 491, 609, 613
HpyCH4III	ACNGT	6 cut(s)	118, 207, 338, 691, 991, 1056
HpyCH4IV	ACGT	2 cut(s)	194, 630
HpyCH4V	TGCA	6 cut(s)	94, 182, 368, 384, 509, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	4 cut(s)	278, 570, 711, 745
HpySE526I	ACGT	2 cut(s)	194, 630
Hsp92I	GRCGYC	2 cut(s)	159, 254
Hsp92II	CATG	8 cut(s)	439, 532, 610, 616, 794, 808, 860, 1003
HspAI	GCGC	1 cut(s)	254
KasI	GGCGCC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	609
KspAI	GTTAAC	2 cut(s)	655, 1017
Kzo9I	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
LmnI	GCTCC	2 cut(s)	447, 772
Lsp1109I	GCAGC	3 cut(s)	163, 166, 380
LweI	GCATC	3 cut(s)	264, 496, 820
MaeI	CTAG	2 cut(s)	494, 626
MaeII	ACGT	2 cut(s)	194, 630
MaeIII	GTNAC	3 cut(s)	703, 946, 971
MalI	GATC	7 cut(s)	21, 302, 353, 418, 558, 611, 1045
MboI	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
MboII	GAAGA	9 cut(s)	5, 71, 513, 529, 628, 659, 937, 972, 1079
MflI	RGATCY	3 cut(s)	19, 416, 1043
MluCI	AATT	5 cut(s)	550, 736, 895, 1063, 1133
Mly113I	GGCGCC	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	792
MmeI	TCCRAC	3 cut(s)	573, 652, 881
MnlI	CCTC	8 cut(s)	244, 351, 438, 632, 668, 671, 729, 865
Mph1103I	ATGCAT	1 cut(s)	511
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	7 cut(s)	50, 480, 579, 654, 735, 758, 1016
MslI	CAYNNNNRTG	2 cut(s)	611, 662
MspI	CCGG	8 cut(s)	44, 248, 257, 271, 327, 345, 377, 914
MspR9I	CCNGG	2 cut(s)	248, 780
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	780
MwoI	GCNNNNNNNGC	1 cut(s)	262
NarI	GGCGCC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
NlaIII	CATG	8 cut(s)	439, 532, 610, 616, 794, 808, 860, 1003
NlaIV	GGNNCC	3 cut(s)	255, 597, 960
NmuCI	GTSAC	2 cut(s)	703, 971
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	2 cut(s)	794, 808
NspV	TTCGAA	1 cut(s)	540
OliI	CACNNNNGTG	1 cut(s)	662
PagI	TCATGA	1 cut(s)	612
PciI	ACATGT	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 156
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	886
PflMI	CCANNNNNTGG	1 cut(s)	968
PfoI	TCCNGGA	1 cut(s)	778
PinAI	ACCGGT	2 cut(s)	43, 376
PkrI	GCNGC	4 cut(s)	145, 178, 181, 370
PleI	GAGTC	1 cut(s)	791
PluTI	GGCGCC	1 cut(s)	257
PmaCI	CACGTG	1 cut(s)	195
PmlI	CACGTG	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	791
Ppu21I	YACGTR	1 cut(s)	195
PscI	ACATGT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	778
PspCI	CACGTG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	3 cut(s)	255, 597, 960
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	3 cut(s)	19, 416, 1043
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	2 cut(s)	611, 662
SaqAI	TTAA	7 cut(s)	50, 480, 579, 654, 735, 758, 1016
SatI	GCNGC	4 cut(s)	144, 177, 180, 369
Sau3AI	GATC	7 cut(s)	19, 300, 351, 416, 556, 609, 1043
SchI	GAGTC	1 cut(s)	792
ScrFI	CCNGG	2 cut(s)	248, 780
SfaNI	GCATC	3 cut(s)	264, 496, 820
SfcI	CTRYAG	1 cut(s)	180
SfoI	GGCGCC	1 cut(s)	255
SfuI	TTCGAA	1 cut(s)	540
SgrAI	CRCCGGYG	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	611, 662
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	5 cut(s)	550, 736, 895, 1063, 1133
SsiI	CCGC	1 cut(s)	144
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	494, 626
StyD4I	CCNGG	2 cut(s)	246, 778
StyI	CCWWGG	1 cut(s)	999
TaaI	ACNGT	6 cut(s)	118, 207, 338, 691, 991, 1056
TaiI	ACGT	2 cut(s)	197, 633
TasI	AATT	5 cut(s)	550, 736, 895, 1063, 1133
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	886
Tru1I	TTAA	7 cut(s)	50, 480, 579, 654, 735, 758, 1016
Tru9I	TTAA	7 cut(s)	50, 480, 579, 654, 735, 758, 1016
TscAI	CASTG	2 cut(s)	694, 994
TseFI	GTSAC	2 cut(s)	703, 971
TseI	GCWGC	3 cut(s)	176, 179, 368
Tsp45I	GTSAC	2 cut(s)	703, 971
TspDTI	ATGAA	4 cut(s)	424, 545, 629, 857
TspRI	CASTG	2 cut(s)	694, 994
Van91I	CCANNNNNTGG	1 cut(s)	968
XapI	RAATTY	3 cut(s)	550, 1063, 1133
XbaI	TCTAGA	1 cut(s)	625
XceI	RCATGY	2 cut(s)	794, 808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1028
XmiI	GTMKAC	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	2 cut(s)	494, 626
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.