Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005581

Physical Location & Seq

Genomic Coordinates Reverse (-)

60594885 .. 60601937

Gene Structure 7053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG377300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAGGAGCACAAGTTCCCAGACAATTGACTCAACTCCAATGGCTCATCCACAACAAGAAGAAGAAGAACTGGGCAAACAAGCCATACGTTTAGCCAATGTCGTGATCCTTCCGATGGTTCTGAAGTCAGCTCTTGAACTCAACGTCATAGACATTATCTGGGGTGCAGGCGACGGCGAGTCACTCTCACCGTCCGACATTGCGGCTCAGCTCCCCACCAAGAACTCCAACGCCCCGGCTGTTCTGGACCGGATGCTTAGGCTCTTGGCCAGCCACTCTATACTCAAATGCTCGGCCCGGACCGGATCAGATGGGCAGGTAGAGAGGTTATATAGTGCAGGTCCCATATGCAAATTCCTTGTCAAGGATCAAAATGGAGGAACCGGGTCCGTTGGTCCTCTGTTTCTCTTGCACCATGAAAAGGTTTTCATGGAAAGCTGGTTCCATTTGAATGATGCTATATTGGAAGGGGGAATTCCTTTTAATAGGGCCTATGGTATGACAGCATTTGAGTACCCAGAAACAGATGAGAGGTTCAATCGGGTATTCAACCAGGCCATGTCAAACCACACCACATTGATCTTGAAGAAGATACTCGATGTTTATCGAGGGTTTGAGGGCATCAATGTGCTGGTTGATGTGGGAGGTGGAATTGGTGTTACTCTTAATCTCATCACCAACAAGTACCCCCACATTAAGGGCATCAATTTTGATTTGCCACACGTCCTAGCTGATGCTCCTTCTTATCCAGGTGTGGAGCATGTTGGGGGGGACATGTTTAAAAGTGTCCCACAAGGAGATGCTATATTCATGAAGTGGATTCTTCATGATTGGAGTGATGACCATTGTTTGACACTTCTCAAGAACTGCTGTAAATCTCTCCCTAGCTCTGGAAAAGTGATCTTTGTGGAATCAATTCTTCCTGAAGTACCTGATAGTAGCGTTACATCCAACATTGTCTGCGAGGACGATTTACTAATGTTTACTCAGAACCCAGGAGGTAAAGAGAGGACCAAAAAAGAGTACGGGGCCTTAGCACTGAACTCTGGATTTTCTCGATTGGAAGTGATTTGCTCTGCTTACAACAGCTGGGTCATGGAGTTCCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

370

Amino Acids

40.71

Weight (kDa)

5.55

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	30 - 123	1.4e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	147 - 352	3e-68	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62900 AT1G63140 AT1G63140 AT1G63140 AT1G63140 AT1G77520 AT1G77530 AT1G77530 AT5G37170 AT5G37170 AT5G37170
prunus_persica	Prupe.1G494500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0296031
rosa_laevigata	RLG00000011739 RLG00000011740
rosa_multiflora	Rmu_sc0004275.1_g000030
rosa_roxburghii	Rroxscaffold_7G00171910 Rroxscaffold_7G00171940
rosa_rugosa	Rorug06G0256600 Rorug06G0256700
rosa_samantha	Rh1AG190400 Rh1CG175800 Rh6AG370000 Rh6BG377300 Rh6CG383200 Rh6DG369900 Rh6DG370000
rosa_wichuraiana	Rw6G032260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	307, 329
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	3 cut(s)	100, 313, 375
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	353, 474
AcuI	CTGAAG	2 cut(s)	143, 945
AfaI	GTAC	4 cut(s)	515, 686, 930, 1025
AfiI	CCNNNNNNNGG	5 cut(s)	115, 364, 421, 697, 890
AflIII	ACRYGT	2 cut(s)	721, 774
AgsI	TTSAA	5 cut(s)	137, 451, 538, 550, 586
AhdI	GACNNNNNGTC	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	724
AjnI	CCWGG	3 cut(s)	552, 748, 994
AloI	GAACNNNNNNTCC	3 cut(s)	30, 425, 457
AluBI	AGCT	6 cut(s)	131, 211, 438, 731, 888, 1089
AluI	AGCT	6 cut(s)	131, 211, 438, 731, 888, 1089
Alw21I	GWGCWC	1 cut(s)	11
AlwI	GGATC	3 cut(s)	100, 313, 375
AoxI	GGCC	5 cut(s)	267, 294, 489, 555, 1029
ApoI	RAATTY	2 cut(s)	353, 474
ArsI	GACNNNNNNTTYG	2 cut(s)	345, 377
Asp700I	GAANNNNTTC	1 cut(s)	915
AspS9I	GGNCC	9 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011, 1029
AsuC2I	CCSGG	3 cut(s)	236, 298, 385
AsuHPI	GGTGA	2 cut(s)	180, 667
AvaII	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
BalI	TGGCCA	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	2 cut(s)	109, 305
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	3 cut(s)	554, 750, 996
BcnI	CCSGG	3 cut(s)	236, 298, 385
BfaI	CTAG	2 cut(s)	728, 885
BfuAI	ACCTGC	2 cut(s)	307, 329
BisI	GCNGC	1 cut(s)	204
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	6 cut(s)	236, 298, 385, 554, 750, 996
Bme18I	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	724
BmgT120I	GGNCC	9 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011, 1029
BmiI	GGNNCC	5 cut(s)	343, 382, 388, 443, 1030
BmrFI	CCNGG	6 cut(s)	236, 298, 385, 554, 750, 996
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	6 cut(s)	243, 445, 630, 711, 724, 790
BmuI	ACTGGG	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
Bpu10I	CCTNAGC	2 cut(s)	257, 1033
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	845
BpuMI	CCSGG	3 cut(s)	236, 298, 385
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	234, 994
BsaWI	WCCGGW	2 cut(s)	249, 302
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	5 cut(s)	115, 364, 421, 697, 890
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	198
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	3 cut(s)	554, 750, 996
BseDI	CCNNGG	2 cut(s)	234, 994
BseGI	GGATG	3 cut(s)	46, 258, 947
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	5 cut(s)	115, 364, 421, 697, 890
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	221, 1001
BseNI	ACTGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	1089
BsgI	GTGCAG	2 cut(s)	186, 357
BshFI	GGCC	5 cut(s)	269, 296, 491, 557, 1031
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	5 cut(s)	236, 250, 298, 303, 384
BslFI	GGGAC	3 cut(s)	327, 773, 785
BslI	CCNNNNNNNGG	5 cut(s)	115, 364, 421, 697, 890
BsmFI	GGGAC	3 cut(s)	327, 773, 785
BsnI	GGCC	5 cut(s)	269, 296, 491, 557, 1031
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	5 cut(s)	105, 305, 367, 579, 900
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	5 cut(s)	269, 296, 491, 557, 1031
BspCNI	CTCAG	2 cut(s)	220, 1000
BspHI	TCATGA	2 cut(s)	810, 826
BspLI	GGNNCC	5 cut(s)	343, 382, 388, 443, 1030
BspMI	ACCTGC	2 cut(s)	307, 329
BspPI	GGATC	3 cut(s)	100, 313, 375
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	234, 994
BssMI	GATC	5 cut(s)	105, 305, 367, 579, 900
Bst2UI	CCWGG	3 cut(s)	554, 750, 996
Bst4CI	ACNGT	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	169, 271
BstDEI	CTNAG	4 cut(s)	207, 257, 987, 1033
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	46, 258, 947
BstKTI	GATC	5 cut(s)	108, 308, 370, 582, 903
BstMBI	GATC	5 cut(s)	105, 305, 367, 579, 900
BstNI	CCWGG	3 cut(s)	554, 750, 996
BstNSI	RCATGY	2 cut(s)	764, 778
BstSCI	CCNGG	6 cut(s)	234, 296, 383, 552, 748, 994
BsuRI	GGCC	5 cut(s)	269, 296, 491, 557, 1031
BtrI	CACGTC	1 cut(s)	724
BtsCI	GGATG	3 cut(s)	46, 258, 947
BtsIMutI	CAGTG	1 cut(s)	1037
BveI	ACCTGC	2 cut(s)	307, 329
Cac8I	GCNNGC	2 cut(s)	169, 271
CciI	TCATGA	2 cut(s)	810, 826
Cfr13I	GGNCC	9 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011, 1029
CpoI	CGGWCCG	1 cut(s)	300
Csp6I	GTAC	4 cut(s)	514, 685, 929, 1024
CspI	CGGWCCG	1 cut(s)	300
CviAII	CATG	8 cut(s)	416, 430, 559, 761, 775, 811, 827, 1096
CviQI	GTAC	4 cut(s)	514, 685, 929, 1024
DdeI	CTNAG	4 cut(s)	207, 257, 987, 1033
DpnI	GATC	5 cut(s)	107, 307, 369, 581, 902
DpnII	GATC	5 cut(s)	105, 305, 367, 579, 900
DraI	TTTAAA	1 cut(s)	781
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	267
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco47I	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
Eco57I	CTGAAG	2 cut(s)	143, 945
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoO109I	RGGNCCY	3 cut(s)	341, 489, 1029
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	3 cut(s)	552, 748, 994
FaeI	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
FaqI	GGGAC	3 cut(s)	327, 773, 785
FatI	CATG	8 cut(s)	415, 429, 558, 760, 774, 810, 826, 1095
FauNDI	CATATG	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	3 cut(s)	33, 265, 934
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	2 cut(s)	728, 885
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	1093
HaeIII	GGCC	5 cut(s)	269, 296, 491, 557, 1031
HapII	CCGG	5 cut(s)	236, 250, 298, 303, 384
Hin1II	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
HinfI	GANTC	4 cut(s)	29, 179, 820, 911
HpaII	CCGG	5 cut(s)	236, 250, 298, 303, 384
HphI	GGTGA	2 cut(s)	180, 667
Hpy166II	GTNNAC	1 cut(s)	984
Hpy188I	TCNGA	5 cut(s)	114, 123, 196, 310, 990
Hpy8I	GTNNAC	1 cut(s)	984
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	3 cut(s)	119, 461, 750
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	3 cut(s)	88, 144, 723
HpyCH4V	TGCA	4 cut(s)	167, 338, 351, 412
HpyF3I	CTNAG	4 cut(s)	207, 257, 987, 1033
HpySE526I	ACGT	3 cut(s)	88, 144, 723
Hsp92II	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
Kzo9I	GATC	5 cut(s)	105, 305, 367, 579, 900
LmnI	GCTCC	4 cut(s)	6, 216, 742, 757
LweI	GCATC	6 cut(s)	243, 445, 630, 711, 724, 790
MaeI	CTAG	2 cut(s)	728, 885
MaeII	ACGT	3 cut(s)	88, 144, 723
MaeIII	GTNAC	3 cut(s)	180, 658, 943
MalI	GATC	5 cut(s)	107, 307, 369, 581, 902
MboI	GATC	5 cut(s)	105, 305, 367, 579, 900
MboII	GAAGA	7 cut(s)	71, 74, 77, 598, 601, 815, 911
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	11
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	6 cut(s)	24, 353, 474, 651, 706, 915
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	23, 188
MmeI	TCCRAC	3 cut(s)	219, 252, 975
Mox20I	TGGCCA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	4 cut(s)	483, 666, 696, 780
MslI	CAYNNNNRTG	2 cut(s)	450, 626
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	1089
MspI	CCGG	5 cut(s)	236, 250, 298, 303, 384
MspR9I	CCNGG	6 cut(s)	236, 298, 385, 554, 750, 996
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	3 cut(s)	554, 750, 996
NciI	CCSGG	3 cut(s)	236, 298, 385
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	5 cut(s)	105, 305, 367, 579, 900
NlaIII	CATG	8 cut(s)	419, 433, 562, 764, 778, 814, 830, 1099
NlaIV	GGNNCC	5 cut(s)	343, 382, 388, 443, 1030
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	2 cut(s)	764, 778
PagI	TCATGA	2 cut(s)	810, 826
PciI	ACATGT	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	820, 911
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	2 cut(s)	23, 187
PpsI	GAGTC	2 cut(s)	23, 187
PpuMI	RGGWCCY	1 cut(s)	341
PscI	ACATGT	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	3 cut(s)	552, 748, 994
PspFI	CCCAGC	1 cut(s)	1089
PspGI	CCWGG	3 cut(s)	552, 748, 994
PspN4I	GGNNCC	5 cut(s)	343, 382, 388, 443, 1030
PspPI	GGNCC	9 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011, 1029
PspPPI	RGGWCCY	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	1089
RsaI	GTAC	4 cut(s)	515, 686, 930, 1025
RsaNI	GTAC	4 cut(s)	514, 685, 929, 1024
RseI	CAYNNNNRTG	2 cut(s)	450, 626
Rsr2I	CGGWCCG	1 cut(s)	300
RsrII	CGGWCCG	1 cut(s)	300
SaqAI	TTAA	4 cut(s)	483, 666, 696, 780
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	5 cut(s)	105, 305, 367, 579, 900
Sau96I	GGNCC	9 cut(s)	247, 295, 300, 341, 387, 395, 489, 1011, 1029
SchI	GAGTC	2 cut(s)	23, 188
ScrFI	CCNGG	6 cut(s)	236, 298, 385, 554, 750, 996
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	6 cut(s)	243, 445, 630, 711, 724, 790
SinI	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
SmiMI	CAYNNNNRTG	2 cut(s)	450, 626
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	6 cut(s)	24, 353, 474, 651, 706, 915
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	2 cut(s)	728, 885
StyD4I	CCNGG	6 cut(s)	234, 296, 383, 552, 748, 994
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	3 cut(s)	91, 147, 726
TaqI	TCGA	3 cut(s)	597, 607, 1057
TasI	AATT	6 cut(s)	24, 353, 474, 651, 706, 915
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	820, 911
Tru1I	TTAA	4 cut(s)	483, 666, 696, 780
Tru9I	TTAA	4 cut(s)	483, 666, 696, 780
TscAI	CASTG	1 cut(s)	1044
TseFI	GTSAC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	5 cut(s)	418, 432, 799, 815, 827
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	1044
VpaK11BI	GGWCC	6 cut(s)	247, 300, 341, 387, 395, 1011
XagI	CCTNNNNNAGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	353, 474
XceI	RCATGY	2 cut(s)	764, 778
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	2 cut(s)	728, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.