Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

23667592 .. 23669145

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCTTCGCCGAGCAAGCGTAGAGAAATGGATTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAATGATGGCATGCAAGAGTTCTTTGTCGAATTCAGTGGACCCAAAGACAGTATATATGAGGGAGGTGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCTAATGTCGATGAAATGTCAGGTTCTGTTTGTCTAGATGTTATTAACCAGACCTGGAGCCCGATGTTCGACCTGGTGAATGTGTTCGAGACATTTCTTCCGCAACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGTGAAGCAGCTGCATTGATGATGCGTGATCGTCCTACCTATGAACAGAGAGTTAAAGAGTATTGTGAGAAATACGCAAAGCCAAGGGCGGATACTGAGGAAATGTCTAGTGATGATGAAATGAGTGAAGATGAATATGCCTCGGATGGTGATGATGAAGATGATGTTGCAATCGCCGGTAAACTTGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

185

Amino Acids

21.18

Weight (kDa)

4.25

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.9e-41	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AccB7I	CCANNNNNTGG	2 cut(s)	197, 362
AciI	CCGC	2 cut(s)	323, 452
AclWI	GGATC	2 cut(s)	347, 545
AcsI	RAATTY	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	2 cut(s)	161, 361
AjnI	CCWGG	2 cut(s)	275, 294
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	347, 545
AlwNI	CAGNNNCTG	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	371, 374
ApoI	RAATTY	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	310, 377, 524
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	361, 383
BccI	CCATC	3 cut(s)	74, 199, 503
BciT130I	CCWGG	2 cut(s)	277, 296
BciVI	GTATCC	2 cut(s)	348, 448
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	257, 471
BfuI	GTATCC	2 cut(s)	348, 448
BisI	GCNGC	2 cut(s)	372, 375
BlsI	GCNGC	2 cut(s)	373, 376
Bme1390I	CCNGG	2 cut(s)	277, 296
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmrFI	CCNGG	2 cut(s)	277, 296
BmsI	GCATC	2 cut(s)	160, 375
BpmI	CTGGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	446, 504
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse118I	RCCGGY	1 cut(s)	539
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	277, 296
BseDI	CCNNGG	2 cut(s)	446, 504
BseGI	GGATG	1 cut(s)	514
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseMII	CTCAG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	361, 383
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmAI	GTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	4 cut(s)	72, 352, 391, 550
BspACI	CCGC	2 cut(s)	323, 452
BspCNI	CTCAG	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	115, 281
BspPI	GGATC	2 cut(s)	347, 545
BsrFI	RCCGGY	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	446, 504
BssMI	GATC	4 cut(s)	72, 352, 391, 550
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	2 cut(s)	277, 296
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	17, 86
BstDEI	CTNAG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	4 cut(s)	75, 355, 394, 553
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	4 cut(s)	72, 352, 391, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	2 cut(s)	277, 296
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	275, 294
BstV1I	GCAGC	2 cut(s)	361, 383
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	2 cut(s)	348, 448
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	17, 86
CaiI	CAGNNNCTG	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	294
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	3 cut(s)	282, 374, 445
CviKI_1	RGCY	3 cut(s)	282, 374, 445
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	4 cut(s)	74, 354, 393, 552
DpnII	GATC	4 cut(s)	72, 352, 391, 550
EciI	GGCGGA	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	275, 294
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	1 cut(s)	88
FaiI	YATR	8 cut(s)	86, 128, 130, 132, 183, 217, 405, 501
FatI	CATG	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	372, 375
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	372, 375
FspBI	CTAG	2 cut(s)	257, 471
GluI	GCNGC	2 cut(s)	372, 375
GsuI	CTGGAG	1 cut(s)	298
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	3 cut(s)	310, 377, 524
Hpy166II	GTNNAC	2 cut(s)	113, 545
Hpy188I	TCNGA	3 cut(s)	342, 352, 508
Hpy188III	TCNNGA	3 cut(s)	167, 257, 310
Hpy8I	GTNNAC	2 cut(s)	113, 545
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	88, 377, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	72, 352, 391, 550
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	180, 228, 262, 281, 284, 289, 308, 553
Lsp1109I	GCAGC	2 cut(s)	361, 383
LweI	GCATC	2 cut(s)	160, 375
MabI	ACCWGGT	1 cut(s)	294
MaeI	CTAG	2 cut(s)	257, 471
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	4 cut(s)	74, 354, 393, 552
MboI	GATC	4 cut(s)	72, 352, 391, 550
MboII	GAAGA	5 cut(s)	160, 311, 323, 503, 533
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	104
MnlI	CCTC	4 cut(s)	127, 131, 454, 514
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	3 cut(s)	267, 417, 556
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	2 cut(s)	277, 296
MvaI	CCWGG	2 cut(s)	277, 296
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	4 cut(s)	72, 352, 391, 550
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	115, 281
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	343
PflMI	CCANNNNNTGG	2 cut(s)	197, 362
PkrI	GCNGC	2 cut(s)	373, 376
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	275, 294
PspGI	CCWGG	2 cut(s)	275, 294
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	267, 417, 556
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	4 cut(s)	72, 352, 391, 550
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	277, 296
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	7 cut(s)	66, 142, 247, 278, 297, 376, 404
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	160, 375
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	323, 452
SspMI	CTAG	2 cut(s)	257, 471
StyD4I	CCNGG	2 cut(s)	275, 294
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	4 cut(s)	102, 231, 291, 309
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	3 cut(s)	267, 417, 556
Tru9I	TTAA	3 cut(s)	267, 417, 556
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	371, 374
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	7 cut(s)	53, 193, 249, 420, 495, 510, 534
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	2 cut(s)	197, 362
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	104
XbaI	TCTAGA	1 cut(s)	256
XceI	RCATGY	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	2 cut(s)	257, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.