Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

10404689 .. 10406456

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAATGATCAATGATGGAATGCATGAATTCTATGTGGATTTCCATGGACCCACTGACAGTATTTATCAGGGAGGTGTGTGGAGGATAAGAGTTGAGCTACCAGATGCTTATCCCTATAAATCTCCCTCAATAGGCTTTGTCAATAAGATCTACCACCCAAATGTTGATGAGATGTCTGGCTCAGTTTGTTTAGATGTTATCAATCAGACGTGGAGCCCCATGTTTGATCTGGTAAACGTATTTGAAGTGTTCTTGCCACAGCTTCTGCTGTATCCCAATCCATCTGACCCTTTAAACGGAGAGGCTGCAGCTTTGATGATGCGTGACCGACCTGCTTATGAACAAAGAGTTAAAGAATTCTGTCTGAAGTACGCCAAGCCTGAGAATATAGGAGCTGCCCCGGAAGAAGAATCAAGTGACGAGGAAATGAGTGATGCTGAATCTGATTCTTGCGATGATCAAGTGGCAGGTCAAGCCGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

4.33

Isoelectric Point (pI)

62.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.1e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	406, 524
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	2 cut(s)	92, 422
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	276
AluBI	AGCT	4 cut(s)	163, 328, 377, 461
AluI	AGCT	4 cut(s)	163, 328, 377, 461
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	371, 374, 461
ApoI	RAATTY	2 cut(s)	92, 422
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	358, 386, 448
BccI	CCATC	3 cut(s)	22, 74, 355
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	2 cut(s)	72, 523
BcnI	CCSGG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	2 cut(s)	406, 524
BfuI	GTATCC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	372, 375, 462
BlsI	GCNGC	3 cut(s)	373, 376, 463
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	3 cut(s)	160, 375, 490
BpuMI	CCSGG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	109, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	109, 465
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseMII	CTCAG	2 cut(s)	261, 438
BseXI	GCAGC	3 cut(s)	358, 386, 448
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmI	GAATGC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	72, 213, 292, 523, 544
Bsp19I	CCATGG	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	260, 439
BspLI	GGNNCC	2 cut(s)	115, 281
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	2 cut(s)	406, 524
BspPI	GGATC	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	109, 465
BssMI	GATC	5 cut(s)	72, 213, 292, 523, 544
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	247, 447
BstDSI	CCRYGG	1 cut(s)	109
BstKTI	GATC	5 cut(s)	75, 216, 295, 526, 547
BstMBI	GATC	5 cut(s)	72, 213, 292, 523, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	3 cut(s)	358, 386, 448
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	2 cut(s)	406, 524
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	3 cut(s)	89, 110, 286
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	2 cut(s)	247, 447
DpnI	GATC	5 cut(s)	74, 215, 294, 525, 546
DpnII	GATC	5 cut(s)	72, 213, 292, 523, 544
DraI	TTTAAA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	452
EcoRI	GAATTC	2 cut(s)	92, 422
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	92, 113, 289
FaiI	YATR	8 cut(s)	90, 99, 111, 183, 287, 405, 455, 550
FatI	CATG	3 cut(s)	88, 109, 285
FbaI	TGATCA	2 cut(s)	72, 523
Fnu4HI	GCNGC	3 cut(s)	372, 375, 462
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	372, 375, 462
GluI	GCNGC	3 cut(s)	372, 375, 462
HapII	CCGG	1 cut(s)	467
Hin1II	CATG	3 cut(s)	92, 113, 289
HinfI	GANTC	3 cut(s)	476, 506, 512
HpaII	CCGG	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	273, 352, 432, 511
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	275, 303
HpyCH4V	TGCA	2 cut(s)	88, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	247, 447
HpySE526I	ACGT	2 cut(s)	275, 303
Hsp92II	CATG	3 cut(s)	92, 113, 289
Ksp22I	TGATCA	2 cut(s)	72, 523
Kzo9I	GATC	5 cut(s)	72, 213, 292, 523, 544
LmnI	GCTCC	2 cut(s)	279, 458
LpnPI	CCDG	8 cut(s)	119, 180, 228, 281, 411, 459, 480, 519
Lsp1109I	GCAGC	3 cut(s)	358, 386, 448
LweI	GCATC	3 cut(s)	160, 375, 490
MaeII	ACGT	2 cut(s)	275, 303
MaeIII	GTNAC	2 cut(s)	389, 482
MalI	GATC	5 cut(s)	74, 215, 294, 525, 546
MboI	GATC	5 cut(s)	72, 213, 292, 523, 544
MboII	GAAGA	2 cut(s)	482, 485
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	92, 422
MnlI	CCTC	5 cut(s)	131, 141, 202, 361, 481
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	2 cut(s)	359, 417
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	5 cut(s)	72, 213, 292, 523, 544
NlaIII	CATG	3 cut(s)	92, 113, 289
NlaIV	GGNNCC	2 cut(s)	115, 281
NmuCI	GTSAC	2 cut(s)	389, 482
NsiI	ATGCAT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	476, 506, 512
PkrI	GCNGC	3 cut(s)	373, 376, 463
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	213
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	359, 417
SatI	GCNGC	3 cut(s)	372, 375, 462
Sau3AI	GATC	5 cut(s)	72, 213, 292, 523, 544
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	3 cut(s)	160, 375, 490
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	92, 422
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	278, 306
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	92, 422
TfiI	GAWTC	3 cut(s)	476, 506, 512
Tru1I	TTAA	2 cut(s)	359, 417
Tru9I	TTAA	2 cut(s)	359, 417
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	389, 482
TseI	GCWGC	3 cut(s)	371, 374, 461
Tsp45I	GTSAC	2 cut(s)	389, 482
TspDTI	ATGAA	3 cut(s)	53, 105, 420
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	92, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.