Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

12782347 .. 12797152

Gene Structure 14806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCCGTGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGACGGCATGCAAGAGTTCTATGTGGATTTCAATGGCCCCAAAGAGAGTCTGTATCAGGGAGGTGTCTGGAGAATAAGGGTGGAGCTACTGGATGCTTATCCTTACAAATCTCCGTCTATTGGCTTTGTCAACAAAATCTACCACCCAAATGTTGATGAAATGTCGGGATCTGTTTGTTTAGATGTTATCAACCAAACTTGGAGCCCCATGTTTGACCTGGTTAATGTGTTTGAAGTGTTTCTGCCCCAACTTCTTTTATATCCCAACCCATCAGATCCATTGAATGGAGAGGCTGCTGCTTTGATGATGCATGATCGCACTGCTTATGATCAAAGAGTAAAAGAGTATTGCGAGAAATATGCAAAGCCAGAAGACATAGGGGGTGCTCGAGAAGAGCAATCAAGTGATGAGGATCTGAGTGAAGATGAGTATGACTCCGGTGAAGATGCAGTCGCAGGCCATGCCGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.89

Weight (kDa)

4.33

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AclWI	GGATC	4 cut(s)	253, 347, 498, 539
AfiI	CCNNNNNNNGG	3 cut(s)	28, 197, 362
AgsI	TTSAA	3 cut(s)	109, 311, 361
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw21I	GWGCWC	1 cut(s)	466
AlwI	GGATC	4 cut(s)	253, 347, 498, 539
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	112, 535
ApeKI	GCWGC	2 cut(s)	371, 374
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	358, 361
BccI	CCATC	2 cut(s)	22, 355
BceAI	ACGGC	2 cut(s)	6, 97
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	2 cut(s)	72, 406
BisI	GCNGC	2 cut(s)	372, 375
BlsI	GCNGC	2 cut(s)	373, 376
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	160, 375, 514
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	166
BsaBI	GATNNNNATC	2 cut(s)	174, 489
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 197, 362
Bse1I	ACTGG	1 cut(s)	171
Bse8I	GATNNNNATC	2 cut(s)	174, 489
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	2 cut(s)	174, 489
BseLI	CCNNNNNNNGG	3 cut(s)	28, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	358, 361
BshFI	GGCC	2 cut(s)	114, 537
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	3 cut(s)	28, 197, 362
BsnI	GGCC	2 cut(s)	114, 537
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	284, 466
Bsp143I	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
BspANI	GGCC	2 cut(s)	114, 537
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	115, 281
BspPI	GGATC	4 cut(s)	253, 347, 498, 539
BspQI	GCTCTTC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
Bst2UI	CCWGG	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	86, 535
BstDEI	CTNAG	2 cut(s)	494, 549
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	7 cut(s)	75, 248, 355, 394, 409, 493, 547
BstMBI	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	358, 361
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	3 cut(s)	245, 352, 490
BstYI	RGATCY	3 cut(s)	245, 352, 490
BsuRI	GGCC	2 cut(s)	114, 537
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	86, 535
Cfr13I	GGNCC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	294
CviAII	CATG	4 cut(s)	85, 286, 389, 539
CviJI	RGCY	7 cut(s)	114, 163, 201, 282, 371, 445, 537
CviKI_1	RGCY	7 cut(s)	114, 163, 201, 282, 371, 445, 537
DdeI	CTNAG	2 cut(s)	494, 549
DpnI	GATC	7 cut(s)	74, 247, 354, 393, 408, 492, 546
DpnII	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	4 cut(s)	88, 289, 392, 542
FatI	CATG	4 cut(s)	84, 285, 388, 538
FbaI	TGATCA	2 cut(s)	72, 406
Fnu4HI	GCNGC	2 cut(s)	372, 375
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	372, 375
GluI	GCNGC	2 cut(s)	372, 375
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	114, 537
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	4 cut(s)	88, 289, 392, 542
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	124, 512
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	352, 495
Hpy188III	TCNNGA	3 cut(s)	145, 243, 467
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	88, 388, 440, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	494, 549
Hsp92II	CATG	4 cut(s)	88, 289, 392, 542
Ksp22I	TGATCA	2 cut(s)	72, 406
Kzo9I	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
LguI	GCTCTTC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	160, 279
LpnPI	CCDG	8 cut(s)	119, 130, 152, 281, 308, 459, 519, 529
Lsp1109I	GCAGC	2 cut(s)	358, 361
LweI	GCATC	3 cut(s)	160, 375, 514
MabI	ACCWGGT	1 cut(s)	294
MalI	GATC	7 cut(s)	74, 247, 354, 393, 408, 492, 546
MboI	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
MboII	GAAGA	4 cut(s)	461, 482, 512, 533
MflI	RGATCY	3 cut(s)	245, 352, 490
MhlI	GDGCHC	2 cut(s)	284, 466
MlyI	GAGTC	2 cut(s)	133, 506
MnlI	CCTC	3 cut(s)	131, 361, 481
Mph1103I	ATGCAT	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeII	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
NlaIII	CATG	4 cut(s)	88, 289, 392, 542
NlaIV	GGNNCC	2 cut(s)	115, 281
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	373, 376
PleI	GAGTC	2 cut(s)	132, 506
PpsI	GAGTC	2 cut(s)	132, 506
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	245, 352, 490
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	7 cut(s)	72, 245, 352, 391, 406, 490, 544
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 506
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	284, 466
SetI	ASST	4 cut(s)	66, 142, 165, 297
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	160, 375, 514
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
SphI	GCATGC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	294
TaqI	TCGA	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	2 cut(s)	371, 374
TspDTI	ATGAA	2 cut(s)	53, 249
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	362
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.