Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Forward (+)

15074719 .. 15077591

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGTCGCCGAGCAAACGCCGGGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGCATGCAGGAGTTTTTTGTGGATTTCAATGGACCCAAAGAGAGTCCTTATCAGGGAGGTGTGTGGAGGATACGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATAGGCTTTGTCAACAAGATCTACCACCCAAATGTAGATGAAATGTCGGGATCAGTTTGTTTAGATGTTATCAACCAGACTTGGAGTCCCATGTTTGATCTGGTTAATGTCTTTGAAGTCTTTCTTCCACAACTTCTTTTATATCCAAATCCATCGGATCCCTTGAACGGAGAAGCTGCTGCTCTGATGATGCGTGATCGGACTGCTTATGAGCAAAGAGTAAAAGAGTTCTGTGAGAAATACGCAAAGCCAGAAGATATAGGAGCTGCCCAAGAAGAGAAATCCAGTGATGAAGAGCTGAGTGAAGATGAATATGCCTCCAGTGATGATGAGGCAGTTGCAGGCAAAGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.95

Weight (kDa)

4.35

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AclWI	GGATC	4 cut(s)	253, 347, 360, 542
AfiI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
AgsI	TTSAA	3 cut(s)	109, 311, 361
AhdI	GACNNNNNGTC	1 cut(s)	279
AluBI	AGCT	5 cut(s)	163, 371, 461, 493, 545
AluI	AGCT	5 cut(s)	163, 371, 461, 493, 545
AlwI	GGATC	4 cut(s)	253, 347, 360, 542
ApeKI	GCWGC	3 cut(s)	371, 374, 461
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	358, 361, 448
BccI	CCATC	4 cut(s)	22, 74, 199, 355
BciVI	GTATCC	1 cut(s)	144
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	144
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	372, 375, 462
BlsI	GCNGC	3 cut(s)	373, 376, 463
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 354
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	160, 375
BpmI	CTGGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
Bse1I	ACTGG	2 cut(s)	480, 516
Bse8I	GATNNNNATC	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	480, 516
BseXI	GCAGC	3 cut(s)	358, 361, 448
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BsmFI	GGGAC	1 cut(s)	267
Bsp143I	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	115, 354
BspPI	GGATC	4 cut(s)	253, 347, 360, 542
BspQI	GCTCTTC	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	480, 516
BssMI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
Bst6I	CTCTTC	2 cut(s)	465, 483
BstC8I	GCNNGC	2 cut(s)	86, 538
BstDEI	CTNAG	1 cut(s)	494
BstKTI	GATC	7 cut(s)	75, 216, 248, 295, 355, 394, 550
BstMBI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	358, 361, 448
BstX2I	RGATCY	2 cut(s)	213, 352
BstYI	RGATCY	2 cut(s)	213, 352
BsuI	GTATCC	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	487, 523
Cac8I	GCNNGC	2 cut(s)	86, 538
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	2 cut(s)	85, 286
CviJI	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
CviKI_1	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	7 cut(s)	74, 215, 247, 294, 354, 393, 549
DpnII	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
DriI	GACNNNNNGTC	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	465, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	2 cut(s)	465, 483
Eco47I	GGWCC	1 cut(s)	113
FaeI	CATG	2 cut(s)	88, 289
FaiI	YATR	9 cut(s)	86, 183, 197, 287, 337, 405, 455, 510, 553
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	84, 285
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	372, 375, 462
Fsp4HI	GCNGC	3 cut(s)	372, 375, 462
GluI	GCNGC	3 cut(s)	372, 375, 462
GsuI	CTGGAG	1 cut(s)	499
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	2 cut(s)	88, 289
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	124, 280
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	352, 381, 396
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	88, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	88, 289
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	160, 458
Lsp1109I	GCAGC	3 cut(s)	358, 361, 448
LweI	GCATC	2 cut(s)	160, 375
MalI	GATC	7 cut(s)	74, 215, 247, 294, 354, 393, 549
MboI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
MboII	GAAGA	5 cut(s)	311, 461, 482, 500, 512
MflI	RGATCY	2 cut(s)	213, 352
MlyI	GAGTC	2 cut(s)	133, 289
MnlI	CCTC	4 cut(s)	131, 141, 520, 523
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
NlaIII	CATG	2 cut(s)	88, 289
NlaIV	GGNNCC	2 cut(s)	115, 354
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	315
PkrI	GCNGC	3 cut(s)	373, 376, 463
PleI	GAGTC	2 cut(s)	132, 288
PpsI	GAGTC	2 cut(s)	132, 288
PsiI	TTATAA	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	115, 354
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	213, 352
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	372, 375, 462
Sau3AI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 289
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	7 cut(s)	66, 142, 165, 373, 463, 495, 547
SfaNI	GCATC	2 cut(s)	160, 375
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	487, 523
TseI	GCWGC	3 cut(s)	371, 374, 461
TspDTI	ATGAA	4 cut(s)	53, 249, 501, 519
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	487, 523
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.