Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

21955923 .. 21959318

Gene Structure 3396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G173000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCAGGGAGATGGACTTGATGAAACTGATGATGAGTGATTATAAGGTAGACATGATCAATGATGGAATGCATGAGTTCTATGTAGATTTCCATGGACCCAGTGAAAGTCCTTATCAGGGAGGGGTGTGGAGGATAAGAGTTGAATTACCAGATGCTTATCCCTATAAATCTCCCTCAATAGGCTTTGTCAATAAGATCTACCACCCAAATGTTGATGAGATGTCAGGTTCAGTTTGTTTAGATGTTATCAATCAAACGTGGAGCCCCATGTTTGATCTGGTGAACGTATTTGAAGTATTCCTACCACAGCTTCTGCTGTATCCCAATCCATCAGACCCTTTGAATGGAGAGGCTGCCGCTTTGATGATGCGCGACAGAGCTGCTTACGAACAAAGAGTTAAAGAATTCTGTCAGAAGTATGCTAAGCCTGAAGATATAGGAGCTGTCCCAGAAGACAAATCAAGTGATGAGGAGCTAAGTGAAGATGAATCTGATTCTTGTGATGATCAAGTGGCAGGTCAAGCAGATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.81

Weight (kDa)

4.34

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	390
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	468
AfiI	CCNNNNNNNGG	3 cut(s)	134, 197, 362
AgsI	TTSAA	3 cut(s)	161, 311, 361
AluBI	AGCT	4 cut(s)	328, 398, 461, 493
AluI	AGCT	4 cut(s)	328, 398, 461, 493
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	371, 398
ApoI	RAATTY	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	358, 385
BccI	CCATC	3 cut(s)	22, 74, 355
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	2 cut(s)	72, 523
BfuAI	ACCTGC	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	372, 375, 399
BlpI	GCTNAGC	1 cut(s)	441
BlsI	GCNGC	3 cut(s)	373, 376, 400
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmrI	ACTGGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	160, 375
BmuI	ACTGGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 197, 362
Bse1I	ACTGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	134, 197, 362
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	358, 385
Bsh1236I	CGCG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	134, 197, 362
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	72, 213, 292, 523, 544
Bsp1720I	GCTNAGC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	115, 281
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	5 cut(s)	72, 213, 292, 523, 544
BssT1I	CCWWGG	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	441, 494
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	5 cut(s)	75, 216, 295, 526, 547
BstMBI	GATC	5 cut(s)	72, 213, 292, 523, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	358, 385
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	213, 544
BstYI	RGATCY	2 cut(s)	213, 544
BsuI	GTATCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	524
CaiI	CAGNNNCTG	1 cut(s)	331
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	4 cut(s)	70, 89, 110, 286
CviJI	RGCY	8 cut(s)	201, 282, 328, 371, 398, 445, 461, 493
CviKI_1	RGCY	8 cut(s)	201, 282, 328, 371, 398, 445, 461, 493
DdeI	CTNAG	2 cut(s)	441, 494
DpnI	GATC	5 cut(s)	74, 215, 294, 525, 546
DpnII	GATC	5 cut(s)	72, 213, 292, 523, 544
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	4 cut(s)	73, 92, 113, 289
FaiI	YATR	9 cut(s)	60, 71, 90, 99, 111, 183, 287, 438, 455
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	4 cut(s)	69, 88, 109, 285
FbaI	TGATCA	2 cut(s)	72, 523
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	372, 375, 399
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	372, 375, 399
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	3 cut(s)	372, 375, 399
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	73, 92, 113, 289
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	506, 512
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	67, 301
Hpy188I	TCNGA	3 cut(s)	352, 432, 511
Hpy8I	GTNNAC	2 cut(s)	67, 301
HpyCH4IV	ACGT	2 cut(s)	275, 303
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	441, 494
HpySE526I	ACGT	2 cut(s)	275, 303
Hsp92II	CATG	4 cut(s)	73, 92, 113, 289
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	2 cut(s)	72, 523
Kzo9I	GATC	5 cut(s)	72, 213, 292, 523, 544
LmnI	GCTCC	3 cut(s)	279, 458, 490
LpnPI	CCDG	9 cut(s)	7, 119, 130, 180, 228, 281, 459, 480, 519
Lsp1109I	GCAGC	2 cut(s)	358, 385
LweI	GCATC	2 cut(s)	160, 375
MaeII	ACGT	2 cut(s)	275, 303
MalI	GATC	5 cut(s)	74, 215, 294, 525, 546
MboI	GATC	5 cut(s)	72, 213, 292, 523, 544
MboII	GAAGA	3 cut(s)	461, 482, 512
MflI	RGATCY	2 cut(s)	213, 544
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	161, 422
MnlI	CCTC	5 cut(s)	131, 141, 202, 361, 481
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	225
Mva1269I	GAATGC	1 cut(s)	90
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	539
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	5 cut(s)	72, 213, 292, 523, 544
NlaIII	CATG	4 cut(s)	73, 92, 113, 289
NlaIV	GGNNCC	2 cut(s)	115, 281
NsiI	ATGCAT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	506, 512
PkrI	GCNGC	3 cut(s)	373, 376, 400
PsiI	TTATAA	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	213, 544
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	3 cut(s)	372, 375, 399
Sau3AI	GATC	5 cut(s)	72, 213, 292, 523, 544
Sau96I	GGNCC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	9 cut(s)	66, 247, 278, 306, 330, 400, 463, 495, 538
SfaNI	GCATC	2 cut(s)	160, 375
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	161, 422
SsiI	CCGC	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	2 cut(s)	278, 306
TasI	AATT	2 cut(s)	161, 422
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	506, 512
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	2 cut(s)	371, 398
TspDTI	ATGAA	2 cut(s)	53, 519
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.