Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

16857236 .. 16860393

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1108100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCCGTGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGACGGTATGCAAGAGTTCTATGTGGATTTCAATGGCCCCAAAGAGAGTCTGTATCAGGGAGGTGTCTGGAGAATAAGGGTGGAGCTACTGGATGCTTATCCTTACAAATCTCCGTCAATTGGCTTTGTCAACAAAATCTACCACCCAAATGTTGATGAAATGTCGGGATCTGTTTGTTTAGATGTTATCAACCAAACTTGGAGCCCCATGTTTGACCTGGTTAATGTGTTTGAAGTGTTTCTGCCCCAACTTCTTTTATATCCCAACCCATCAGATCCATTGAATGGAGAGGCTGCTGCTTTGATCATGCGTGATCGCACTGCTTATGATCAAAGAGTAAAAGAGTATTGCGAGAAATATGCAAAGCCGGAAGACATAGGGGGTGCTCGAGAAGATCAATCAAGTGATGAGGAGCTGAGTGAAGGTGAGTATGACTCCGGTGACGATGCAGTCGCAGGCCATGCCGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.82

Weight (kDa)

4.35

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.6e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	362
AclWI	GGATC	3 cut(s)	253, 347, 539
AfiI	CCNNNNNNNGG	3 cut(s)	28, 197, 362
AgsI	TTSAA	3 cut(s)	109, 311, 361
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	163, 493
AluI	AGCT	2 cut(s)	163, 493
Alw21I	GWGCWC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	253, 347, 539
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	112, 535
ApeKI	GCWGC	2 cut(s)	371, 374
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	515, 530
AvaI	CYCGRG	1 cut(s)	465
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	358, 361
BccI	CCATC	2 cut(s)	22, 355
BceAI	ACGGC	1 cut(s)	6
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	3 cut(s)	72, 381, 406
BisI	GCNGC	2 cut(s)	372, 375
BlsI	GCNGC	2 cut(s)	373, 376
Bme1390I	CCNGG	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	160, 514
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	166
BsaBI	GATNNNNATC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 197, 362
Bse1I	ACTGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	28, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	358, 361
BshFI	GGCC	2 cut(s)	114, 537
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	446, 516
BslI	CCNNNNNNNGG	3 cut(s)	28, 197, 362
BsnI	GGCC	2 cut(s)	114, 537
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	284, 466
Bsp143I	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
BspANI	GGCC	2 cut(s)	114, 537
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	115, 281
BspPI	GGATC	3 cut(s)	253, 347, 539
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	2 cut(s)	494, 549
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	8 cut(s)	75, 248, 355, 384, 394, 409, 475, 547
BstMBI	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	358, 361
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	245, 352
BstYI	RGATCY	2 cut(s)	245, 352
BsuRI	GGCC	2 cut(s)	114, 537
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	294
CviAII	CATG	3 cut(s)	286, 385, 539
CviJI	RGCY	8 cut(s)	114, 163, 201, 282, 371, 445, 493, 537
CviKI_1	RGCY	8 cut(s)	114, 163, 201, 282, 371, 445, 493, 537
DdeI	CTNAG	2 cut(s)	494, 549
DpnI	GATC	8 cut(s)	74, 247, 354, 383, 393, 408, 474, 546
DpnII	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
DrdI	GACNNNNNNGTC	1 cut(s)	527
DseDI	GACNNNNNNGTC	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	3 cut(s)	289, 388, 542
FatI	CATG	3 cut(s)	285, 384, 538
FbaI	TGATCA	3 cut(s)	72, 381, 406
Fnu4HI	GCNGC	2 cut(s)	372, 375
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	372, 375
GluI	GCNGC	2 cut(s)	372, 375
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	114, 537
HapII	CCGG	2 cut(s)	446, 516
Hin1II	CATG	3 cut(s)	289, 388, 542
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	124, 512
HpaII	CCGG	2 cut(s)	446, 516
HphI	GGTGA	2 cut(s)	515, 530
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	3 cut(s)	145, 243, 467
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	88, 440, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	494, 549
Hsp92II	CATG	3 cut(s)	289, 388, 542
Ksp22I	TGATCA	3 cut(s)	72, 381, 406
Kzo9I	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
LmnI	GCTCC	3 cut(s)	160, 279, 490
LpnPI	CCDG	8 cut(s)	119, 130, 152, 281, 308, 459, 519, 529
Lsp1109I	GCAGC	2 cut(s)	358, 361
LweI	GCATC	2 cut(s)	160, 514
MabI	ACCWGGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	8 cut(s)	74, 247, 354, 383, 393, 408, 474, 546
MboI	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
MboII	GAAGA	2 cut(s)	461, 482
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	245, 352
MhlI	GDGCHC	2 cut(s)	284, 466
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	133, 506
MnlI	CCTC	3 cut(s)	131, 361, 481
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	2 cut(s)	446, 516
MspR9I	CCNGG	1 cut(s)	296
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeII	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
NlaIII	CATG	3 cut(s)	289, 388, 542
NlaIV	GGNNCC	2 cut(s)	115, 281
NmuCI	GTSAC	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	373, 376
PleI	GAGTC	2 cut(s)	132, 506
PpsI	GAGTC	2 cut(s)	132, 506
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	245, 352
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	8 cut(s)	72, 245, 352, 381, 391, 406, 472, 544
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 506
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	284, 466
SetI	ASST	6 cut(s)	66, 142, 165, 297, 495, 505
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	2 cut(s)	160, 514
Sfr274I	CTCGAG	1 cut(s)	465
SlaI	CTCGAG	1 cut(s)	465
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	466
TasI	AATT	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	2 cut(s)	371, 374
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	53, 249
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.