Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Forward (+)

19359748 .. 19362520

Gene Structure 2773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGACATGATCAATGATGGAATGCATGAGTTCTATGTAGATTTCCATGGACCCAGCGAGAGTCCTTATCAGGGAGGCGTGTGGAGGATAAGAGTTGAACTACCAGATGCTTATCCCTATAAATCTCCCTCAATAGGCTTTATCAATAAGATCTACCACCCAAATGTCGATGAGATGTCAGGTTCGGTTTGCTTAGATGTTATCAATCAAACGTGGAGCCCCATGTTTGATTTGGTAAATGTATTTGAAGTATTCCTGCCACAGCTTCTGCTGTATCCCAATCCATCAGACCCTTTAAATGGAGAGGCTGCAGCTTTAATGATGCGTGACCGAGCTTCTTATGAACAAAGAGTCAAAGAATACTGTCTGAAGTATGCCAAGCCTGAAGATATAGGAGCTGTCCCAGAAGACAAATCAAGTGATGAAGAACTGAGTGAAGATGAATCTGATTCCTGTGATGACCAAGTGGCCGGTCAAGCAGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

183

Amino Acids

20.84

Weight (kDa)

4.34

Isoelectric Point (pI)

58.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	4.7e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	531
AcuI	CTGAAG	2 cut(s)	452, 468
AfiI	CCNNNNNNNGG	3 cut(s)	134, 197, 362
AgsI	TTSAA	2 cut(s)	161, 311
AluBI	AGCT	4 cut(s)	328, 377, 398, 461
AluI	AGCT	4 cut(s)	328, 377, 398, 461
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	371, 374
AspS9I	GGNCC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	2 cut(s)	358, 386
BccI	CCATC	3 cut(s)	22, 74, 355
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	72
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	2 cut(s)	372, 375
BlsI	GCNGC	2 cut(s)	373, 376
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmsI	GCATC	2 cut(s)	160, 375
BpiI	GAAGAC	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 197, 362
Bse118I	RCCGGY	1 cut(s)	533
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	109
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	134, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	358, 386
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	1 cut(s)	533
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	3 cut(s)	134, 197, 362
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	72, 213, 544
Bsp19I	CCATGG	1 cut(s)	109
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	115, 281
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	539
BsrFI	RCCGGY	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	533
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	72, 213, 544
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	428
BstDEI	CTNAG	2 cut(s)	256, 494
BstDSI	CCRYGG	1 cut(s)	109
BstKTI	GATC	3 cut(s)	75, 216, 547
BstMBI	GATC	3 cut(s)	72, 213, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	358, 386
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	213, 544
BstYI	RGATCY	2 cut(s)	213, 544
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	533
BtgI	CCRYGG	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	4 cut(s)	70, 89, 110, 286
CviJI	RGCY	9 cut(s)	201, 282, 328, 371, 377, 398, 445, 461, 533
CviKI_1	RGCY	9 cut(s)	201, 282, 328, 371, 377, 398, 445, 461, 533
DdeI	CTNAG	2 cut(s)	256, 494
DpnI	GATC	3 cut(s)	74, 215, 546
DpnII	GATC	3 cut(s)	72, 213, 544
DraI	TTTAAA	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	452, 468
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	4 cut(s)	73, 92, 113, 289
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	4 cut(s)	69, 88, 109, 285
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	372, 375
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	372, 375
GluI	GCNGC	2 cut(s)	372, 375
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	1 cut(s)	534
Hin1II	CATG	4 cut(s)	73, 92, 113, 289
HinfI	GANTC	4 cut(s)	124, 414, 506, 512
HpaII	CCGG	1 cut(s)	534
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	352, 432, 511
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	2 cut(s)	88, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	256, 494
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	4 cut(s)	73, 92, 113, 289
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	72, 213, 544
LmnI	GCTCC	2 cut(s)	279, 458
LpnPI	CCDG	9 cut(s)	119, 130, 180, 228, 332, 459, 480, 529, 547
Lsp1109I	GCAGC	2 cut(s)	358, 386
LweI	GCATC	2 cut(s)	160, 375
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	3 cut(s)	74, 215, 546
MboI	GATC	3 cut(s)	72, 213, 544
MboII	GAAGA	4 cut(s)	461, 482, 500, 512
MflI	RGATCY	2 cut(s)	213, 544
MhlI	GDGCHC	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	133, 423
MnlI	CCTC	4 cut(s)	131, 141, 202, 361
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	2 cut(s)	359, 380
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	539
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	3 cut(s)	72, 213, 544
NlaIII	CATG	4 cut(s)	73, 92, 113, 289
NlaIV	GGNNCC	2 cut(s)	115, 281
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	506, 512
PkrI	GCNGC	2 cut(s)	373, 376
PleI	GAGTC	2 cut(s)	132, 422
PpsI	GAGTC	2 cut(s)	132, 422
PspFI	CCCAGC	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	213, 544
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	359, 380
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	3 cut(s)	72, 213, 544
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 423
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	7 cut(s)	66, 247, 278, 330, 379, 400, 463
SfaNI	GCATC	2 cut(s)	160, 375
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	506, 512
Tru1I	TTAA	2 cut(s)	359, 380
Tru9I	TTAA	2 cut(s)	359, 380
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	2 cut(s)	371, 374
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	53, 420, 501, 519
VpaK11BI	GGWCC	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.