Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

16976926 .. 16978985

Gene Structure 2060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1065900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTGGAAATGATCAATGATGGAATGCATGAATTCTATGTGGATTTCCATGGACCCACTGACAGTATTTATCAGGGAGGTGTGTGGAGGATAAGAGTTGAGCTACCAGATGCTTATCCCTATAAATCTCCCTCAATAGGCTTTGTCAATAAGATCTACCACCCAAATGTTGATGAGATGTCGGGCTCAGTTTGTTTAGATGTTATCAATCAGACGTGGAGCCCCATGTTTGATCTGGTAAACGTATTTGAAGTGTTCTTGCCACAGCTTCTGCTGTATCCCAATCCGTCTGACCCTTTAAACGGAGAGGCTGCAGCTTTGATGATGCGTGACCGACCTGCTTATGAACAAAGAGTTAAAGAATTCTGTCTGAAGTATGCCAAGCCTGAGGATATAGGAGCTGCCCCGGAAGAAGAATCAAGTGACGAGGAAATGAGTGATGCTGAATCTGATTCTTGTGATGATCAAGTGGCAGGTCAAGCCGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

4.3

Isoelectric Point (pI)

61.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.1e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	406, 524
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	2 cut(s)	92, 422
AcuI	CTGAAG	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	276
AluBI	AGCT	4 cut(s)	163, 328, 377, 461
AluI	AGCT	4 cut(s)	163, 328, 377, 461
AlwI	GGATC	1 cut(s)	539
AlwNI	CAGNNNCTG	1 cut(s)	331
ApeKI	GCWGC	3 cut(s)	371, 374, 461
ApoI	RAATTY	2 cut(s)	92, 422
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	113
AxyI	CCTNAGG	1 cut(s)	447
BanII	GRGCYC	2 cut(s)	248, 284
BbvI	GCAGC	3 cut(s)	358, 386, 448
BccI	CCATC	2 cut(s)	22, 74
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	2 cut(s)	72, 523
BcnI	CCSGG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	2 cut(s)	406, 524
BfuI	GTATCC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	372, 375, 462
BlsI	GCNGC	3 cut(s)	373, 376, 463
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	3 cut(s)	160, 375, 490
BpuMI	CCSGG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	109, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse21I	CCTNAGG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	109, 465
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseMII	CTCAG	2 cut(s)	261, 438
BseXI	GCAGC	3 cut(s)	358, 386, 448
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmI	GAATGC	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	248, 284
Bsp143I	GATC	5 cut(s)	72, 213, 292, 523, 544
Bsp19I	CCATGG	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	260, 439
BspLI	GGNNCC	2 cut(s)	115, 281
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	2 cut(s)	406, 524
BspPI	GGATC	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	109, 465
BssMI	GATC	5 cut(s)	72, 213, 292, 523, 544
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	125
BstDEI	CTNAG	2 cut(s)	247, 447
BstDSI	CCRYGG	1 cut(s)	109
BstKTI	GATC	5 cut(s)	75, 216, 295, 526, 547
BstMBI	GATC	5 cut(s)	72, 213, 292, 523, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	3 cut(s)	358, 386, 448
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	2 cut(s)	406, 524
CaiI	CAGNNNCTG	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	89, 110, 286
DdeI	CTNAG	2 cut(s)	247, 447
DpnI	GATC	5 cut(s)	74, 215, 294, 525, 546
DpnII	GATC	5 cut(s)	72, 213, 292, 523, 544
DraI	TTTAAA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	2 cut(s)	248, 284
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	447
EcoRI	GAATTC	2 cut(s)	92, 422
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	248, 284
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	92, 113, 289
FaiI	YATR	9 cut(s)	90, 99, 111, 183, 287, 405, 438, 455, 550
FatI	CATG	3 cut(s)	88, 109, 285
FbaI	TGATCA	2 cut(s)	72, 523
Fnu4HI	GCNGC	3 cut(s)	372, 375, 462
FriOI	GRGCYC	2 cut(s)	248, 284
Fsp4HI	GCNGC	3 cut(s)	372, 375, 462
GluI	GCNGC	3 cut(s)	372, 375, 462
HapII	CCGG	1 cut(s)	467
Hin1II	CATG	3 cut(s)	92, 113, 289
HinfI	GANTC	3 cut(s)	476, 506, 512
HpaII	CCGG	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	273, 352, 432, 511
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	275, 303
HpyCH4V	TGCA	2 cut(s)	88, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	2 cut(s)	247, 447
HpySE526I	ACGT	2 cut(s)	275, 303
Hsp92II	CATG	3 cut(s)	92, 113, 289
Ksp22I	TGATCA	2 cut(s)	72, 523
Kzo9I	GATC	5 cut(s)	72, 213, 292, 523, 544
LmnI	GCTCC	2 cut(s)	279, 458
LpnPI	CCDG	7 cut(s)	119, 180, 281, 411, 459, 480, 519
Lsp1109I	GCAGC	3 cut(s)	358, 386, 448
LweI	GCATC	3 cut(s)	160, 375, 490
MaeII	ACGT	2 cut(s)	275, 303
MaeIII	GTNAC	2 cut(s)	389, 482
MalI	GATC	5 cut(s)	74, 215, 294, 525, 546
MboI	GATC	5 cut(s)	72, 213, 292, 523, 544
MboII	GAAGA	2 cut(s)	482, 485
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	248, 284
MluCI	AATT	2 cut(s)	92, 422
MnlI	CCTC	6 cut(s)	131, 141, 202, 361, 442, 481
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	2 cut(s)	359, 417
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	5 cut(s)	72, 213, 292, 523, 544
NlaIII	CATG	3 cut(s)	92, 113, 289
NlaIV	GGNNCC	2 cut(s)	115, 281
NmuCI	GTSAC	2 cut(s)	389, 482
NsiI	ATGCAT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	476, 506, 512
PkrI	GCNGC	3 cut(s)	373, 376, 463
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	359, 417
SatI	GCNGC	3 cut(s)	372, 375, 462
Sau3AI	GATC	5 cut(s)	72, 213, 292, 523, 544
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	248, 284
SfaNI	GCATC	3 cut(s)	160, 375, 490
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	92, 422
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	278, 306
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	92, 422
TfiI	GAWTC	3 cut(s)	476, 506, 512
Tru1I	TTAA	2 cut(s)	359, 417
Tru9I	TTAA	2 cut(s)	359, 417
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	389, 482
TseI	GCWGC	3 cut(s)	371, 374, 461
Tsp45I	GTSAC	2 cut(s)	389, 482
TspDTI	ATGAA	3 cut(s)	53, 105, 420
TspGWI	ACGGA	2 cut(s)	336, 378
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	92, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.