Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

11021061 .. 11024740

Gene Structure 3680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G103400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTTCGCCAAGCAAACGCCGTGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGACGGCATGCAAGAGTTTTATGTGGATTTCAATGGACCCAAAGAGAGTCCGTATCAGGGAGGTGTCTGGAGGATAAGGGTGGAGCTACCAGATGCTTATCCTTACAAATCTCCATCTGTTGGCTTTGTCAACAAAATTTACCACCCAAATGTTGATGAAATGTCTGGATCAGTTTGTTTAGATGTTATCAACCAAACTTGGAGCCCCATGTTTGACCTGGTTAATGTGTTTGAAGTGTTTCTGCCCCAACTTCTTTTATATCCCAACCCATCGGATCCATTGAATGGAGAGGCAGCTGCTTTAATGATGCGTGATCGTTCTGCTTATGAACAAAGAGTAAAAGAGTATTGTGAGAAGTATGCAAAGCCAGAAGACATAGGTGGTGCTCCAGAGGAGAAATCAAGTGATGATGAGGATCTGAGTGAAGATGAATATGACTCCAGTGATGATGCAGTTGCAGGCCAAGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

185

Amino Acids

20.92

Weight (kDa)

4.25

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	197, 362
AclWI	GGATC	5 cut(s)	253, 347, 360, 501, 542
AcsI	RAATTY	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
AgsI	TTSAA	3 cut(s)	109, 311, 361
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	163, 374, 545
AluI	AGCT	3 cut(s)	163, 374, 545
Alw21I	GWGCWC	1 cut(s)	466
AlwI	GGATC	5 cut(s)	253, 347, 360, 501, 542
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	2 cut(s)	371, 374
ApoI	RAATTY	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	361, 383
BccI	CCATC	3 cut(s)	22, 199, 355
BceAI	ACGGC	2 cut(s)	6, 97
BciT130I	CCWGG	1 cut(s)	296
BclI	TGATCA	1 cut(s)	72
BisI	GCNGC	2 cut(s)	372, 375
BlsI	GCNGC	2 cut(s)	373, 376
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	3 cut(s)	115, 281, 354
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	3 cut(s)	160, 375, 517
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	3 cut(s)	166, 450, 502
BsaBI	GATNNNNATC	2 cut(s)	174, 492
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
Bse1I	ACTGG	1 cut(s)	519
Bse8I	GATNNNNATC	2 cut(s)	174, 492
BseBI	CCWGG	1 cut(s)	296
BseJI	GATNNNNATC	2 cut(s)	174, 492
BseLI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	361, 383
BshFI	GGCC	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	466
BslI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BsnI	GGCC	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	284, 466
Bsp143I	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	1 cut(s)	489
BspLI	GGNNCC	3 cut(s)	115, 281, 354
BspPI	GGATC	5 cut(s)	253, 347, 360, 501, 542
BsrI	ACTGG	1 cut(s)	519
BssMI	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
Bst2UI	CCWGG	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	86, 538
BstDEI	CTNAG	1 cut(s)	497
BstKTI	GATC	6 cut(s)	75, 248, 355, 394, 496, 550
BstMBI	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	361, 383
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	352, 493
BstYI	RGATCY	2 cut(s)	352, 493
BsuRI	GGCC	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	86, 538
Cfr13I	GGNCC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	294
CviAII	CATG	2 cut(s)	85, 286
CviJI	RGCY	7 cut(s)	163, 201, 282, 374, 445, 540, 545
CviKI_1	RGCY	7 cut(s)	163, 201, 282, 374, 445, 540, 545
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	6 cut(s)	74, 247, 354, 393, 495, 549
DpnII	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	2 cut(s)	88, 289
FaiI	YATR	9 cut(s)	86, 99, 287, 337, 405, 438, 455, 513, 553
FatI	CATG	2 cut(s)	84, 285
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	372, 375
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	372, 375
GluI	GCNGC	2 cut(s)	372, 375
GsuI	CTGGAG	3 cut(s)	166, 450, 502
HaeIII	GGCC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	88, 289
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	124, 515
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	352, 498
Hpy188III	TCNNGA	3 cut(s)	145, 243, 467
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	88, 440, 530, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	497
Hsp92II	CATG	2 cut(s)	88, 289
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
LmnI	GCTCC	3 cut(s)	160, 279, 469
Lsp1109I	GCAGC	2 cut(s)	361, 383
LweI	GCATC	3 cut(s)	160, 375, 517
MabI	ACCWGGT	1 cut(s)	294
MalI	GATC	6 cut(s)	74, 247, 354, 393, 495, 549
MboI	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
MboII	GAAGA	2 cut(s)	461, 515
MflI	RGATCY	2 cut(s)	352, 493
MhlI	GDGCHC	2 cut(s)	284, 466
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	133, 509
MnlI	CCTC	5 cut(s)	131, 141, 361, 463, 484
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	300, 380
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeII	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
NlaIII	CATG	2 cut(s)	88, 289
NlaIV	GGNNCC	3 cut(s)	115, 281, 354
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	315
PflMI	CCANNNNNTGG	2 cut(s)	197, 362
PkrI	GCNGC	2 cut(s)	373, 376
PleI	GAGTC	2 cut(s)	132, 509
PpsI	GAGTC	2 cut(s)	132, 509
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	115, 281, 354
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	352, 493
PvuII	CAGCTG	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	300, 380
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	6 cut(s)	72, 245, 352, 391, 493, 547
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 509
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	284, 466
SetI	ASST	7 cut(s)	66, 142, 165, 297, 376, 460, 547
SexAI	ACCWGGT	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	160, 375, 517
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	294
TasI	AATT	1 cut(s)	213
Tru1I	TTAA	2 cut(s)	300, 380
Tru9I	TTAA	2 cut(s)	300, 380
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	2 cut(s)	371, 374
TspDTI	ATGAA	4 cut(s)	53, 249, 420, 522
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	526
Van91I	CCANNNNNTGG	2 cut(s)	197, 362
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.