Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Forward (+)

14394764 .. 14397821

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG171000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGCATGCAAGAGTTTTTTGTGGATTTCAATGGACCCAAAGAGAGTCCTTATCAGGGAGGTGTGTGGAGGATACGGGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATAGGCTTTGTCAACAAGATCTACCACCCAAATGTTGATGAAATGTCGGGATCAGTTTGTTTAGATGTTATCAACCAGACTTGGAGTCCCATGTTTGATCTGGTTAATGTGTTTGAAGTCTTTCTTCCACAACTTCTTTTATATCCAAATCCATCGGATCCCTTGAACGGAGAAGCTGCTGCTCTGATGATGCGTGATCGGACTGCTTATGAGCAAAGAGTAAAAGAGTTCTGTGAGAAATACGCAAAGCCAGAAGATATAGGAGCTGCCCAAGAAGAGAAATCCAGTGATGAAGAGCTGAGTGAAGATGAATATGCCTCCAGTGATGATGAGGCAGTTGCAGGCAAAGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

169

Amino Acids

19.16

Weight (kDa)

4.19

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	3 - 127	2.2e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AclWI	GGATC	4 cut(s)	208, 302, 315, 497
AfiI	CCNNNNNNNGG	3 cut(s)	89, 152, 317
AgsI	TTSAA	3 cut(s)	64, 266, 316
AhdI	GACNNNNNGTC	1 cut(s)	234
AluBI	AGCT	5 cut(s)	118, 326, 416, 448, 500
AluI	AGCT	5 cut(s)	118, 326, 416, 448, 500
AlwI	GGATC	4 cut(s)	208, 302, 315, 497
ApeKI	GCWGC	3 cut(s)	326, 329, 416
Asp700I	GAANNNNTTC	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	307
BbvI	GCAGC	3 cut(s)	313, 316, 403
BccI	CCATC	3 cut(s)	29, 154, 310
BciVI	GTATCC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	99
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	3 cut(s)	327, 330, 417
BlsI	GCNGC	3 cut(s)	328, 331, 418
Bme18I	GGWCC	1 cut(s)	68
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	70, 309
BmsI	GCATC	2 cut(s)	115, 330
BpmI	CTGGAG	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 152, 317
Bse1I	ACTGG	2 cut(s)	435, 471
Bse8I	GATNNNNATC	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	3 cut(s)	89, 152, 317
BseMII	CTCAG	1 cut(s)	440
BseNI	ACTGG	2 cut(s)	435, 471
BseXI	GCAGC	3 cut(s)	313, 316, 403
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	3 cut(s)	89, 152, 317
BsmFI	GGGAC	1 cut(s)	222
Bsp143I	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
BspCNI	CTCAG	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	70, 309
BspPI	GGATC	4 cut(s)	208, 302, 315, 497
BspQI	GCTCTTC	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	435, 471
BssMI	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
Bst6I	CTCTTC	2 cut(s)	420, 438
BstC8I	GCNNGC	2 cut(s)	41, 493
BstDEI	CTNAG	1 cut(s)	449
BstKTI	GATC	7 cut(s)	30, 171, 203, 250, 310, 349, 505
BstMBI	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	3 cut(s)	313, 316, 403
BstX2I	RGATCY	2 cut(s)	168, 307
BstYI	RGATCY	2 cut(s)	168, 307
BsuI	GTATCC	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	442, 478
Cac8I	GCNNGC	2 cut(s)	41, 493
Cfr13I	GGNCC	1 cut(s)	68
CviAII	CATG	2 cut(s)	40, 241
CviJI	RGCY	7 cut(s)	118, 156, 326, 400, 416, 448, 500
CviKI_1	RGCY	7 cut(s)	118, 156, 326, 400, 416, 448, 500
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	7 cut(s)	29, 170, 202, 249, 309, 348, 504
DpnII	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	420, 438
Eam1105I	GACNNNNNGTC	1 cut(s)	234
EarI	CTCTTC	2 cut(s)	420, 438
Eco47I	GGWCC	1 cut(s)	68
FaeI	CATG	2 cut(s)	43, 244
FaiI	YATR	9 cut(s)	41, 138, 152, 242, 292, 360, 410, 465, 508
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	2 cut(s)	39, 240
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	327, 330, 417
Fsp4HI	GCNGC	3 cut(s)	327, 330, 417
GluI	GCNGC	3 cut(s)	327, 330, 417
GsuI	CTGGAG	1 cut(s)	454
Hin1II	CATG	2 cut(s)	43, 244
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	79, 235
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	307, 336, 351
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	43, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	43, 244
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	2 cut(s)	115, 413
LpnPI	CCDG	8 cut(s)	74, 135, 236, 239, 414, 448, 477, 484
Lsp1109I	GCAGC	3 cut(s)	313, 316, 403
LweI	GCATC	2 cut(s)	115, 330
MalI	GATC	7 cut(s)	29, 170, 202, 249, 309, 348, 504
MboI	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
MboII	GAAGA	5 cut(s)	266, 416, 437, 455, 467
MflI	RGATCY	2 cut(s)	168, 307
MlyI	GAGTC	2 cut(s)	88, 244
MnlI	CCTC	4 cut(s)	86, 96, 475, 478
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
NlaIII	CATG	2 cut(s)	43, 244
NlaIV	GGNNCC	2 cut(s)	70, 309
NspI	RCATGY	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	270
PkrI	GCNGC	3 cut(s)	328, 331, 418
PleI	GAGTC	2 cut(s)	87, 243
PpsI	GAGTC	2 cut(s)	87, 243
PsiI	TTATAA	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	70, 309
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	168, 307
RseI	CAYNNNNRTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	3 cut(s)	327, 330, 417
Sau3AI	GATC	7 cut(s)	27, 168, 200, 247, 307, 346, 502
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	2 cut(s)	88, 244
SetI	ASST	7 cut(s)	21, 97, 120, 328, 418, 450, 502
SfaNI	GCATC	2 cut(s)	115, 330
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	442, 478
TseI	GCWGC	3 cut(s)	326, 329, 416
TspDTI	ATGAA	3 cut(s)	204, 456, 474
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	442, 478
VpaK11BI	GGWCC	1 cut(s)	68
XceI	RCATGY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XmnI	GAANNNNTTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.