Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

16538063 .. 16540189

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCTTCGCCAAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGATGAGCGATTATAAAGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCAATGGTCCCAAAGACAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAGATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATGTTGATGAACTGTCGGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGTTCGACCTTGTGAATGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCATCAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGCAACGAGTTAAAGAATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTTCAGAAGATAAGTCTAGCGATGAAGAACTAAGTGAAGAGGAATACGGCTCAGATAATGAGGATGATGATGATGATGATGTTGCAATTGCTGGCAAACCAGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

187

Amino Acids

21.3

Weight (kDa)

4.23

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	7 - 107	2.1e-34	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	60, 183
AccB7I	CCANNNNNTGG	2 cut(s)	197, 362
AclWI	GGATC	2 cut(s)	347, 551
AcsI	RAATTY	3 cut(s)	92, 104, 213
AfiI	CCNNNNNNNGG	3 cut(s)	197, 362, 452
AgsI	TTSAA	3 cut(s)	104, 109, 361
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	4 cut(s)	43, 163, 328, 371
AluI	AGCT	4 cut(s)	43, 163, 328, 371
Alw26I	GTCTC	2 cut(s)	131, 305
AlwI	GGATC	2 cut(s)	347, 551
ApeKI	GCWGC	2 cut(s)	371, 374
ApoI	RAATTY	3 cut(s)	92, 104, 213
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
AspS9I	GGNCC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	358, 361
BccI	CCATC	3 cut(s)	74, 199, 355
BceAI	ACGGC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	348
BcoDI	GTCTC	2 cut(s)	131, 305
BfaI	CTAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	2 cut(s)	372, 375
BlsI	GCNGC	2 cut(s)	373, 376
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	2 cut(s)	160, 375
Bpu10I	CCTNAGC	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 362, 452
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	2 cut(s)	220, 523
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	197, 362, 452
BseMII	CTCAG	2 cut(s)	338, 519
BseXI	GCAGC	2 cut(s)	358, 361
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	197, 362, 452
BsmAI	GTCTC	2 cut(s)	131, 305
BsmFI	GGGAC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	72, 352, 391, 556
BspCNI	CTCAG	2 cut(s)	337, 518
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	347, 551
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	4 cut(s)	72, 352, 391, 556
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	125, 240, 428
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	86, 547
BstDEI	CTNAG	3 cut(s)	324, 485, 505
BstF5I	GGATG	2 cut(s)	220, 523
BstKTI	GATC	4 cut(s)	75, 355, 394, 559
BstMAI	GTCTC	2 cut(s)	131, 305
BstMBI	GATC	4 cut(s)	72, 352, 391, 556
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	358, 361
BstX2I	RGATCY	2 cut(s)	352, 556
BstYI	RGATCY	2 cut(s)	352, 556
BsuI	GTATCC	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	220, 523
Cac8I	GCNNGC	2 cut(s)	86, 547
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	6 cut(s)	43, 163, 328, 371, 445, 504
CviKI_1	RGCY	6 cut(s)	43, 163, 328, 371, 445, 504
DdeI	CTNAG	3 cut(s)	324, 485, 505
DpnI	GATC	4 cut(s)	74, 354, 393, 558
DpnII	GATC	4 cut(s)	72, 352, 391, 556
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	113
EcoRI	GAATTC	2 cut(s)	92, 104
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	1 cut(s)	88
FaiI	YATR	8 cut(s)	35, 60, 86, 99, 183, 287, 405, 438
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	372, 375
FokI	GGATG	2 cut(s)	207, 530
Fsp4HI	GCNGC	2 cut(s)	372, 375
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	2 cut(s)	372, 375
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	352, 460, 508
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	3 cut(s)	125, 240, 428
HpyCH4V	TGCA	3 cut(s)	88, 440, 539
HpyF3I	CTNAG	3 cut(s)	324, 485, 505
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	72, 352, 391, 556
LpnPI	CCDG	5 cut(s)	180, 411, 432, 459, 531
Lsp1109I	GCAGC	2 cut(s)	358, 361
LweI	GCATC	2 cut(s)	160, 375
MaeI	CTAG	1 cut(s)	471
MalI	GATC	4 cut(s)	74, 354, 393, 558
MboI	GATC	4 cut(s)	72, 352, 391, 556
MboII	GAAGA	6 cut(s)	160, 311, 323, 473, 491, 503
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	352, 556
MluCI	AATT	4 cut(s)	92, 104, 213, 540
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	131, 333, 487, 508
MseI	TTAA	3 cut(s)	267, 380, 417
MslI	CAYNNNNRTG	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	447
NdeII	GATC	4 cut(s)	72, 352, 391, 556
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PflMI	CCANNNNNTGG	2 cut(s)	197, 362
PkrI	GCNGC	2 cut(s)	373, 376
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PsiI	TTATAA	2 cut(s)	60, 183
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	352, 556
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	3 cut(s)	267, 380, 417
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	4 cut(s)	72, 352, 391, 556
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	7 cut(s)	45, 142, 165, 297, 330, 373, 457
SfaNI	GCATC	2 cut(s)	160, 375
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	4 cut(s)	92, 104, 213, 540
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	125, 240, 428
TaqI	TCGA	1 cut(s)	291
TasI	AATT	4 cut(s)	92, 104, 213, 540
Tru1I	TTAA	3 cut(s)	267, 380, 417
Tru9I	TTAA	3 cut(s)	267, 380, 417
TseI	GCWGC	2 cut(s)	371, 374
TspDTI	ATGAA	4 cut(s)	53, 193, 249, 492
Van91I	CCANNNNNTGG	2 cut(s)	197, 362
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	3 cut(s)	92, 104, 213
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.