Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383437.1

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1056

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 386 bp

gtccttatcagggaggcgtgtggaggataagagttgaactaccagatgcttatccctataaatctccctcaataggctttatcaataagatctaccacccaaatgttgatgagatgtcaggttcagtttgcttagatgttatcaatcaaacgtggagccccatgtttgatttggtaaatgtatttgaagtattcctgccacagcttcttctgtatcccaatccatcagaccctttaaatggagaggctgcagctttaatgatgcgtgaccgagcttcttatgaacaaagagtcaaaggtattgattctagtcttgtttcctggtcatgcatcattccgttctgtgatagtttcagattactcatctcacagtttttcatatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

127

Amino Acids

14.48

Weight (kDa)

4.75

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	3 cut(s)	10, 73, 238
AgsI	TTSAA	2 cut(s)	37, 187
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	3 cut(s)	204, 253, 274
AluI	AGCT	3 cut(s)	204, 253, 274
ApeKI	GCWGC	2 cut(s)	247, 250
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	2 cut(s)	234, 262
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	321
BciVI	GTATCC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	89
BisI	GCNGC	2 cut(s)	248, 251
BlsI	GCNGC	2 cut(s)	249, 252
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	3 cut(s)	36, 251, 338
BsaBI	GATNNNNATC	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	3 cut(s)	10, 73, 238
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	321
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	3 cut(s)	10, 73, 238
BseXI	GCAGC	2 cut(s)	234, 262
BslI	CCNNNNNNNGG	3 cut(s)	10, 73, 238
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	252
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	132, 383
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	248
BstV1I	GCAGC	2 cut(s)	234, 262
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	224
CviAII	CATG	2 cut(s)	162, 326
CviJI	RGCY	6 cut(s)	77, 158, 204, 247, 253, 274
CviKI_1	RGCY	6 cut(s)	77, 158, 204, 247, 253, 274
DdeI	CTNAG	2 cut(s)	132, 383
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
DraI	TTTAAA	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	2 cut(s)	165, 329
FaiI	YATR	5 cut(s)	59, 163, 281, 327, 379
FatI	CATG	2 cut(s)	161, 325
Fnu4HI	GCNGC	2 cut(s)	248, 251
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	2 cut(s)	248, 251
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	2 cut(s)	248, 251
Hin1II	CATG	2 cut(s)	165, 329
HinfI	GANTC	2 cut(s)	290, 304
Hpy188I	TCNGA	2 cut(s)	228, 355
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	250, 329
HpyF3I	CTNAG	2 cut(s)	132, 383
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	165, 329
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	5 cut(s)	56, 104, 208, 306, 333
Lsp1109I	GCAGC	2 cut(s)	234, 262
LweI	GCATC	3 cut(s)	36, 251, 338
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	4 cut(s)	7, 17, 78, 237
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	2 cut(s)	235, 256
MslI	CAYNNNNRTG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	165, 329
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	249, 252
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	235, 256
SatI	GCNGC	2 cut(s)	248, 251
Sau3AI	GATC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	123, 154, 206, 255, 276, 300
SfaNI	GCATC	3 cut(s)	36, 251, 338
SfcI	CTRYAG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	101
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	154
TaqII	GACCGA	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	2 cut(s)	235, 256
Tru9I	TTAA	2 cut(s)	235, 256
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	247, 250
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	296, 366
TspGWI	ACGGA	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.