Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

21357750 .. 21360378

Gene Structure 2629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1086900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCCGTGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGACGGCATGCAAGAGTTTTATGTGGATTTCAAAGGCCCCAAAGAGAGTCCGTATCAAGGAGGTGTCTGGAGGATAAGGGTGGAGTTACCGGATGCTTATCCTTACAAATCTCCTTCTATCGGCTTTGTCAACAAAATTTACCACCCAAATGTTGATGAAATGTCGGGATCAGTTTGTTTAGATGTTATCAACCAAACTTGGAGCCCCATGTTTGACCTGGTTAATGTGTTTGAAGTGTTTCTGCCTCAACTTCTTTTGTATCCCAACCCATCGGATCCATTGAATGGAGAGGCTGCTGCTTTGATGATGCGCGATCGCACTGCTTATGATCAAAGAGTAAAAGAGTATTGTGAGAAATATGCAAAGGCAGAAGACGTAGGGGGTGCCCCAGAGGAGCATTCAAGTGATGAGGAGCTGAGCGAAGATGAGTATGACTCCGGGGATGATGCAGTCGCAGGCCAAGCCGATCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

4.33

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.9e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccII	CGCG	1 cut(s)	390
AclWI	GGATC	4 cut(s)	253, 347, 360, 539
AcsI	RAATTY	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
AgsI	TTSAA	4 cut(s)	109, 311, 361, 480
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	493
AluI	AGCT	1 cut(s)	493
AlwI	GGATC	4 cut(s)	253, 347, 360, 539
AoxI	GGCC	2 cut(s)	112, 535
ApeKI	GCWGC	2 cut(s)	371, 374
ApoI	RAATTY	1 cut(s)	213
AsiSI	GCGATCGC	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	466
BamHI	GGATCC	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	358, 361
BccI	CCATC	2 cut(s)	22, 355
BceAI	ACGGC	2 cut(s)	6, 97
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	296
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	2 cut(s)	72, 406
BcnI	CCSGG	1 cut(s)	517
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	2 cut(s)	372, 375
BlpI	GCTNAGC	1 cut(s)	494
BlsI	GCNGC	2 cut(s)	373, 376
Bme1390I	CCNGG	2 cut(s)	296, 517
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	4 cut(s)	115, 281, 354, 463
BmrFI	CCNGG	2 cut(s)	296, 517
BmsI	GCATC	3 cut(s)	160, 375, 514
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	166
Bpu1102I	GCTNAGC	1 cut(s)	494
BpuMI	CCSGG	1 cut(s)	517
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	2 cut(s)	175, 526
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseRI	GAGGAG	2 cut(s)	485, 503
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	358, 361
Bsh1236I	CGCG	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	2 cut(s)	114, 537
BshNI	GGYRCC	1 cut(s)	461
BsiEI	CGRYCG	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	167, 516
BslI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	2 cut(s)	114, 537
Bsp1286I	GDGCHC	2 cut(s)	284, 466
Bsp143I	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
Bsp1720I	GCTNAGC	1 cut(s)	494
BspANI	GGCC	2 cut(s)	114, 537
BspCNI	CTCAG	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	4 cut(s)	115, 281, 354, 463
BspPI	GGATC	4 cut(s)	253, 347, 360, 539
BspT107I	GGYRCC	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
Bst2UI	CCWGG	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	86, 535
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	175, 526
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	6 cut(s)	75, 248, 355, 394, 409, 547
BstMBI	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
BstMCI	CGRYCG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	294, 515
BstSLI	GKGCMC	1 cut(s)	466
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	358, 361
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	114, 537
BtsCI	GGATG	2 cut(s)	175, 526
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	86, 535
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	294
CviAII	CATG	2 cut(s)	85, 286
CviJI	RGCY	7 cut(s)	114, 201, 282, 371, 493, 537, 542
CviKI_1	RGCY	7 cut(s)	114, 201, 282, 371, 493, 537, 542
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	6 cut(s)	74, 247, 354, 393, 408, 546
DpnII	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
Eco24I	GRGCYC	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	2 cut(s)	88, 289
FaiI	YATR	6 cut(s)	86, 99, 287, 405, 438, 510
FatI	CATG	2 cut(s)	84, 285
FbaI	TGATCA	2 cut(s)	72, 406
Fnu4HI	GCNGC	2 cut(s)	372, 375
FokI	GGATG	2 cut(s)	182, 533
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	372, 375
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	2 cut(s)	372, 375
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	114, 537
HapII	CCGG	2 cut(s)	167, 516
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	88, 289
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	124, 512
HpaII	CCGG	2 cut(s)	167, 516
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	145, 243
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	88, 440, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	1 cut(s)	494
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	88, 289
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	2 cut(s)	72, 406
Kzo9I	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
LmnI	GCTCC	3 cut(s)	279, 472, 490
LpnPI	CCDG	7 cut(s)	130, 180, 281, 308, 480, 519, 529
Lsp1109I	GCAGC	2 cut(s)	358, 361
LweI	GCATC	3 cut(s)	160, 375, 514
MabI	ACCWGGT	1 cut(s)	294
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	6 cut(s)	74, 247, 354, 393, 408, 546
MboI	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
MboII	GAAGA	2 cut(s)	461, 512
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	284, 466
MluCI	AATT	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	133, 506
MnlI	CCTC	6 cut(s)	131, 141, 333, 361, 463, 481
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	2 cut(s)	225, 480
MspI	CCGG	2 cut(s)	167, 516
MspR9I	CCNGG	2 cut(s)	296, 517
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	517
NdeII	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
NlaIII	CATG	2 cut(s)	88, 289
NlaIV	GGNNCC	4 cut(s)	115, 281, 354, 463
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	373, 376
Ple19I	CGATCG	1 cut(s)	394
PleI	GAGTC	2 cut(s)	132, 506
PpsI	GAGTC	2 cut(s)	132, 506
Psp6I	CCWGG	1 cut(s)	294
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	4 cut(s)	115, 281, 354, 463
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	352
PvuI	CGATCG	1 cut(s)	394
RgaI	GCGATCGC	1 cut(s)	394
RseI	CAYNNNNRTG	2 cut(s)	225, 480
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	6 cut(s)	72, 245, 352, 391, 406, 544
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 506
ScrFI	CCNGG	2 cut(s)	296, 517
SduI	GDGCHC	2 cut(s)	284, 466
SetI	ASST	5 cut(s)	66, 142, 297, 456, 495
SexAI	ACCWGGT	1 cut(s)	294
SfaAI	GCGATCGC	1 cut(s)	394
SfaNI	GCATC	3 cut(s)	160, 375, 514
SgfI	GCGATCGC	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	225, 480
SphI	GCATGC	1 cut(s)	88
Sse9I	AATT	1 cut(s)	213
StyD4I	CCNGG	2 cut(s)	294, 515
TaiI	ACGT	1 cut(s)	456
TasI	AATT	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	2 cut(s)	371, 374
TspDTI	ATGAA	2 cut(s)	53, 249
TspGWI	ACGGA	2 cut(s)	117, 537
TspRI	CASTG	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	362
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.