Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

1656215 .. 1658909

Gene Structure 2695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGTCGCCGAGCAAGCGCCGGGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGACGATCGATGATGACATGCAGGAGTTTTTTGTGGATTTCAATGGACCCAAAGAGAGTCCTTATCAGGGAGGTGTGTGGAGGATACGGGTGGAGCTACCGGATGCTTATCCTTATAAATCTCCCTCTATTGGCTTTGTGAACAAAATCTACCACCCAAATGTTGATGAAATGTCGGGATCAGTTTGTTTAGATGTTATCAACCAGAATTGGAGTCCCATGTTTGATCTCGTTAATGTGTTTGAAGTCTTTCTTCCCCAACTTCTTTTATATCCCAATCCATCGGATCCCTTGAACGGAGAAGCTGCTGCTTTGATGATGCGTGATAAGACTGCTTATGAACAAAGAGTGAAGGAGTTCCGTGAGAAATACGCAAAGCCAGAAGATATAGGGGCTGCCCAAGAGGAGAAATCCAGTGATGAAGAGCTGAGTGAAGATGAATATGCCTCCAGTGATGATGAGGCAGTTGCAGGCAAAGCTGATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

185

Amino Acids

21.02

Weight (kDa)

4.34

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	5.6e-41	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AclWI	GGATC	4 cut(s)	253, 347, 360, 542
AfiI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
AgsI	TTSAA	3 cut(s)	109, 311, 361
AluBI	AGCT	4 cut(s)	163, 371, 493, 545
AluI	AGCT	4 cut(s)	163, 371, 493, 545
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	4 cut(s)	253, 347, 360, 542
ApeKI	GCWGC	3 cut(s)	371, 374, 461
Asp700I	GAANNNNTTC	2 cut(s)	315, 422
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	358, 361, 448
BccI	CCATC	2 cut(s)	22, 355
BciVI	GTATCC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	553
BfoI	RGCGCY	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	3 cut(s)	372, 375, 462
BlsI	GCNGC	3 cut(s)	373, 376, 463
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 354
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	160, 375
BpmI	CTGGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	23
Bsa29I	ATCGAT	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
Bse1I	ACTGG	2 cut(s)	480, 516
Bse8I	GATNNNNATC	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	75
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	480, 516
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	3 cut(s)	358, 361, 448
Bsh1285I	CGRYCG	1 cut(s)	75
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	22, 167
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BsmAI	GTCTC	1 cut(s)	62
BsmBI	CGTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	267
Bsp143I	GATC	5 cut(s)	72, 245, 292, 352, 547
BspCNI	CTCAG	1 cut(s)	486
BspDI	ATCGAT	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	115, 354
BspPI	GGATC	4 cut(s)	253, 347, 360, 542
BspQI	GCTCTTC	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	480, 516
BssMI	GATC	5 cut(s)	72, 245, 292, 352, 547
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	17, 538
BstDEI	CTNAG	1 cut(s)	494
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	5 cut(s)	75, 248, 295, 355, 550
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	5 cut(s)	72, 245, 292, 352, 547
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 542
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	358, 361, 448
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	487, 523
Cac8I	GCNNGC	2 cut(s)	17, 538
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	75
CviAII	CATG	2 cut(s)	85, 286
CviJI	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
CviKI_1	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	5 cut(s)	74, 247, 294, 354, 549
DpnII	GATC	5 cut(s)	72, 245, 292, 352, 547
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	113
Esp3I	CGTCTC	1 cut(s)	62
FaeI	CATG	2 cut(s)	88, 289
FaiI	YATR	7 cut(s)	86, 183, 287, 337, 405, 455, 510
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	84, 285
Fnu4HI	GCNGC	3 cut(s)	372, 375, 462
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	372, 375, 462
FspBI	CTAG	1 cut(s)	553
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	372, 375, 462
GsuI	CTGGAG	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	22
HapII	CCGG	2 cut(s)	22, 167
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	88, 289
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	124, 280
HpaII	CCGG	2 cut(s)	22, 167
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	412
HpyCH4V	TGCA	2 cut(s)	88, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 542
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	88, 289
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	72, 245, 292, 352, 547
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	35, 74, 119, 180, 284, 459, 493, 522, 529
Lsp1109I	GCAGC	3 cut(s)	358, 361, 448
LweI	GCATC	2 cut(s)	160, 375
MaeI	CTAG	1 cut(s)	553
MalI	GATC	5 cut(s)	74, 247, 294, 354, 549
MboI	GATC	5 cut(s)	72, 245, 292, 352, 547
MboII	GAAGA	4 cut(s)	311, 461, 500, 512
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	2 cut(s)	133, 289
MnlI	CCTC	6 cut(s)	131, 141, 202, 463, 520, 523
MroXI	GAANNNNTTC	2 cut(s)	315, 422
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	2 cut(s)	22, 167
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	16, 542
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	5 cut(s)	72, 245, 292, 352, 547
NlaIII	CATG	2 cut(s)	88, 289
NlaIV	GGNNCC	2 cut(s)	115, 354
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	2 cut(s)	315, 422
PkrI	GCNGC	3 cut(s)	373, 376, 463
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	132, 288
PpsI	GAGTC	2 cut(s)	132, 288
PsiI	TTATAA	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	115, 354
PspPI	GGNCC	1 cut(s)	113
PsrI	GAACNNNNNNTAC	2 cut(s)	200, 232
PsuI	RGATCY	1 cut(s)	352
PvuI	CGATCG	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	372, 375, 462
Sau3AI	GATC	5 cut(s)	72, 245, 292, 352, 547
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 289
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	6 cut(s)	66, 142, 165, 373, 495, 547
SfaNI	GCATC	2 cut(s)	160, 375
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	21
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	487, 523
TseI	GCWGC	3 cut(s)	371, 374, 461
TspDTI	ATGAA	5 cut(s)	53, 249, 420, 501, 519
TspGWI	ACGGA	2 cut(s)	378, 416
TspRI	CASTG	2 cut(s)	487, 523
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	88
XmnI	GAANNNNTTC	2 cut(s)	315, 422
XspI	CTAG	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.