Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

53088064 .. 53090760

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGTCGCCGAGCAAACGCCGGGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGATGGCATGCAAGAGTTTTTTGTGGATTTCAATGGACCCAAAGAGAGTCCTTATCAGGGAGGTGTGTGGAGGATACGAGTGGAGCTACCAGATGCTTATCCTTATAAATCTCCATCTATAGGCTTTGTCAACAAGATCTACCACCCAAATGTTGATGAAATGTCGGGATCAGTTTGTTTAGATGTTATCAACCAGACTTGGAGTCCCATGTTTGATCTGGTTAATGTGTTTGAAGTCTTTCTTCCACAACTTCTTTTATATCCAAATCCATCGGATCCCTTGAACGGAGAAGCTGCTGCTCTGATGATGCGTGATCGGACTGCTTATGAGCAAAGAGTAAAAGAGTTCTGTGAGAAATACGCAAAGCCAGAAGATATAGGAGCTGCCCAAGAAGAGAAATCCAGTGATGAAGAGCTGAGTGAAGATGAATATGCCTCCAGTGATGATGAGGCAGTTGCAGGCAAAGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.95

Weight (kDa)

4.35

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 142	1.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AclWI	GGATC	4 cut(s)	253, 347, 360, 542
AfiI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
AgsI	TTSAA	3 cut(s)	109, 311, 361
AhdI	GACNNNNNGTC	1 cut(s)	279
AluBI	AGCT	5 cut(s)	163, 371, 461, 493, 545
AluI	AGCT	5 cut(s)	163, 371, 461, 493, 545
AlwI	GGATC	4 cut(s)	253, 347, 360, 542
ApeKI	GCWGC	3 cut(s)	371, 374, 461
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	352
BbvI	GCAGC	3 cut(s)	358, 361, 448
BccI	CCATC	4 cut(s)	22, 74, 199, 355
BciVI	GTATCC	1 cut(s)	144
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	144
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	372, 375, 462
BlsI	GCNGC	3 cut(s)	373, 376, 463
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 354
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	160, 375
BpmI	CTGGAG	1 cut(s)	499
BpuMI	CCSGG	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
Bse1I	ACTGG	2 cut(s)	480, 516
Bse8I	GATNNNNATC	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	480, 516
BseXI	GCAGC	3 cut(s)	358, 361, 448
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	4 cut(s)	28, 134, 197, 362
BsmFI	GGGAC	1 cut(s)	267
Bsp143I	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
BspCNI	CTCAG	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	115, 354
BspPI	GGATC	4 cut(s)	253, 347, 360, 542
BspQI	GCTCTTC	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	480, 516
BssMI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
Bst6I	CTCTTC	2 cut(s)	465, 483
BstC8I	GCNNGC	2 cut(s)	86, 538
BstDEI	CTNAG	1 cut(s)	494
BstKTI	GATC	7 cut(s)	75, 216, 248, 295, 355, 394, 550
BstMBI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	358, 361, 448
BstX2I	RGATCY	2 cut(s)	213, 352
BstYI	RGATCY	2 cut(s)	213, 352
BsuI	GTATCC	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	487, 523
Cac8I	GCNNGC	2 cut(s)	86, 538
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	2 cut(s)	85, 286
CviJI	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
CviKI_1	RGCY	7 cut(s)	163, 201, 371, 445, 461, 493, 545
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	7 cut(s)	74, 215, 247, 294, 354, 393, 549
DpnII	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
DriI	GACNNNNNGTC	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	465, 483
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	2 cut(s)	465, 483
Eco47I	GGWCC	1 cut(s)	113
FaeI	CATG	2 cut(s)	88, 289
FaiI	YATR	9 cut(s)	86, 183, 197, 287, 337, 405, 455, 510, 553
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	84, 285
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	372, 375, 462
Fsp4HI	GCNGC	3 cut(s)	372, 375, 462
GluI	GCNGC	3 cut(s)	372, 375, 462
GsuI	CTGGAG	1 cut(s)	499
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	2 cut(s)	88, 289
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	2 cut(s)	124, 280
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	352, 381, 396
Hpy188III	TCNNGA	1 cut(s)	243
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	88, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	88, 289
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	160, 458
LpnPI	CCDG	9 cut(s)	35, 119, 180, 281, 284, 459, 493, 522, 529
Lsp1109I	GCAGC	3 cut(s)	358, 361, 448
LweI	GCATC	2 cut(s)	160, 375
MalI	GATC	7 cut(s)	74, 215, 247, 294, 354, 393, 549
MboI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
MboII	GAAGA	5 cut(s)	311, 461, 482, 500, 512
MflI	RGATCY	2 cut(s)	213, 352
MlyI	GAGTC	2 cut(s)	133, 289
MnlI	CCTC	4 cut(s)	131, 141, 520, 523
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
NlaIII	CATG	2 cut(s)	88, 289
NlaIV	GGNNCC	2 cut(s)	115, 354
NmeAIII	GCCGAG	1 cut(s)	36
NspI	RCATGY	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	315
PkrI	GCNGC	3 cut(s)	373, 376, 463
PleI	GAGTC	2 cut(s)	132, 288
PpsI	GAGTC	2 cut(s)	132, 288
PsiI	TTATAA	1 cut(s)	183
PspN4I	GGNNCC	2 cut(s)	115, 354
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	213, 352
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	372, 375, 462
Sau3AI	GATC	7 cut(s)	72, 213, 245, 292, 352, 391, 547
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	133, 289
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	7 cut(s)	66, 142, 165, 373, 463, 495, 547
SfaNI	GCATC	2 cut(s)	160, 375
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	487, 523
TseI	GCWGC	3 cut(s)	371, 374, 461
TspDTI	ATGAA	4 cut(s)	53, 249, 501, 519
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	2 cut(s)	487, 523
VpaK11BI	GGWCC	1 cut(s)	113
XceI	RCATGY	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.