Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Reverse (-)

13437912 .. 13440581

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGTGATAGAAAAACCGTCCACAAATTACCTATATTCGCGGGCCAGGCGGTTATCCCTAGCACAACTCCAAAAATTAAAAGGAAACAAAAATCTAAGAAAAATAAATTTACTGGACCATCATTGCAAAAAAGCTCTCAAAATCTCTCTCAGCCTCTCTCTCTCTCTCTCTCACCCCCAAAAAACCCGACCGAACCACAAAAAATGTCTTCCCCAAGCAAACGCCGTGAGATGGATTTGATGAAACTGATGATGAGTGATTACAAGGTGGAGATGATCAATGACGGCATGCAAGAGTTTTATGTGGATTTCAAAGGCCCCAAAGAGAGTCCGTATCAAGAAGGTGTCTGGAGGATAAGGGTGGAGTTACCGGATGCTTATCCTTACAAATCTCCATCTATCGGCTTTGTCAACAAAATTTACCACCCAAATGTTGATGAAATGTCAGGATCGATTTGTTTAGATGTTATCAACCAAACTTGGAGCCCCATGTTTGACCTGGTTAATGTATTTGAAGTGTTTCTGCCTCAACTTCTTTTATATCCCAACCCATCGGATCCATTGAATGGAGAGGCTGCTGCTTTGATGATGCGCGATCGCACTGATTATCGATCAAAGAGTAAAAGAGTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

212

Amino Acids

24.15

Weight (kDa)

9.52

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	77 - 209	1.2e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccII	CGCG	2 cut(s)	41, 594
AciI	CCGC	2 cut(s)	41, 50
AclWI	GGATC	3 cut(s)	457, 551, 564
AcsI	RAATTY	2 cut(s)	107, 417
AfiI	CCNNNNNNNGG	3 cut(s)	232, 401, 566
AgsI	TTSAA	3 cut(s)	313, 515, 565
AjnI	CCWGG	2 cut(s)	45, 498
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
AlwI	GGATC	3 cut(s)	457, 551, 564
AoxI	GGCC	2 cut(s)	43, 316
ApeKI	GCWGC	2 cut(s)	575, 578
ApoI	RAATTY	2 cut(s)	107, 417
AsiSI	GCGATCGC	1 cut(s)	598
Asp700I	GAANNNNTTC	1 cut(s)	519
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	3 cut(s)	43, 116, 317
AsuHPI	GGTGA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	562, 565
BccI	CCATC	4 cut(s)	127, 226, 403, 559
BceAI	ACGGC	2 cut(s)	210, 301
BciT130I	CCWGG	2 cut(s)	47, 500
BclI	TGATCA	1 cut(s)	276
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	576, 579
BlsI	GCNGC	2 cut(s)	577, 580
Bme1390I	CCNGG	2 cut(s)	47, 500
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	3 cut(s)	43, 116, 317
BmiI	GGNNCC	3 cut(s)	319, 485, 558
BmrFI	CCNGG	2 cut(s)	47, 500
BmsI	GCATC	2 cut(s)	364, 579
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	370
Bsa29I	ATCGAT	2 cut(s)	452, 610
BsaBI	GATNNNNATC	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 401, 566
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	47, 500
BseCI	ATCGAT	2 cut(s)	452, 610
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	3 cut(s)	232, 401, 566
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	562, 565
Bsh1236I	CGCG	2 cut(s)	41, 594
Bsh1285I	CGRYCG	2 cut(s)	192, 598
BshFI	GGCC	2 cut(s)	45, 318
BshVI	ATCGAT	2 cut(s)	452, 610
BsiEI	CGRYCG	2 cut(s)	192, 598
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	3 cut(s)	232, 401, 566
BsnI	GGCC	2 cut(s)	45, 318
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	5 cut(s)	276, 449, 556, 595, 611
BspACI	CCGC	2 cut(s)	41, 50
BspANI	GGCC	2 cut(s)	45, 318
BspCNI	CTCAG	1 cut(s)	163
BspDI	ATCGAT	2 cut(s)	452, 610
BspFNI	CGCG	2 cut(s)	41, 594
BspLI	GGNNCC	3 cut(s)	319, 485, 558
BspPI	GGATC	3 cut(s)	457, 551, 564
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	118
BssMI	GATC	5 cut(s)	276, 449, 556, 595, 611
Bst2UI	CCWGG	2 cut(s)	47, 500
Bst4CI	ACNGT	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	43, 290
BstDEI	CTNAG	2 cut(s)	96, 150
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	2 cut(s)	41, 594
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	5 cut(s)	279, 452, 559, 598, 614
BstMBI	GATC	5 cut(s)	276, 449, 556, 595, 611
BstMCI	CGRYCG	2 cut(s)	192, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	47, 500
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	45, 498
BstUI	CGCG	2 cut(s)	41, 594
BstV1I	GCAGC	2 cut(s)	562, 565
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
Bsu15I	ATCGAT	2 cut(s)	452, 610
BsuRI	GGCC	2 cut(s)	45, 318
BsuTUI	ATCGAT	2 cut(s)	452, 610
BtsCI	GGATG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	43, 290
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	3 cut(s)	43, 116, 317
ClaI	ATCGAT	2 cut(s)	452, 610
CsiI	ACCWGGT	1 cut(s)	498
CviAII	CATG	2 cut(s)	289, 490
CviJI	RGCY	7 cut(s)	45, 135, 154, 318, 405, 486, 575
CviKI_1	RGCY	7 cut(s)	45, 135, 154, 318, 405, 486, 575
DdeI	CTNAG	2 cut(s)	96, 150
DpnI	GATC	5 cut(s)	278, 451, 558, 597, 613
DpnII	GATC	5 cut(s)	276, 449, 556, 595, 611
Eco24I	GRGCYC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	45, 498
EcoT38I	GRGCYC	1 cut(s)	488
FaeI	CATG	2 cut(s)	292, 493
FaiI	YATR	5 cut(s)	35, 290, 303, 491, 541
FatI	CATG	2 cut(s)	288, 489
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	576, 579
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	576, 579
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	2 cut(s)	576, 579
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	45, 318
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	1 cut(s)	594
Hin1II	CATG	2 cut(s)	292, 493
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	22, 412
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	3 cut(s)	338, 349, 447
Hpy8I	GTNNAC	2 cut(s)	22, 412
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	127, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	96, 150
Hsp92II	CATG	2 cut(s)	292, 493
HspAI	GCGC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	5 cut(s)	276, 449, 556, 595, 611
LmnI	GCTCC	1 cut(s)	483
LpnPI	CCDG	8 cut(s)	32, 59, 99, 334, 384, 432, 485, 512
Lsp1109I	GCAGC	2 cut(s)	562, 565
LweI	GCATC	2 cut(s)	364, 579
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	5 cut(s)	278, 451, 558, 597, 613
MboI	GATC	5 cut(s)	276, 449, 556, 595, 611
MboII	GAAGA	1 cut(s)	201
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	4 cut(s)	26, 75, 107, 417
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	4 cut(s)	165, 345, 537, 565
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	78, 504
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	47, 500
MvaI	CCWGG	2 cut(s)	47, 500
MvnI	CGCG	2 cut(s)	41, 594
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	5 cut(s)	276, 449, 556, 595, 611
NlaIII	CATG	2 cut(s)	292, 493
NlaIV	GGNNCC	3 cut(s)	319, 485, 558
NspI	RCATGY	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	519
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	577, 580
Ple19I	CGATCG	1 cut(s)	598
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	45, 498
PspGI	CCWGG	2 cut(s)	45, 498
PspN4I	GGNNCC	3 cut(s)	319, 485, 558
PspPI	GGNCC	3 cut(s)	43, 116, 317
PsuI	RGATCY	1 cut(s)	556
PvuI	CGATCG	1 cut(s)	598
RgaI	GCGATCGC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	78, 504
SatI	GCNGC	2 cut(s)	576, 579
Sau3AI	GATC	5 cut(s)	276, 449, 556, 595, 611
Sau96I	GGNCC	3 cut(s)	43, 116, 317
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	47, 500
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	5 cut(s)	34, 137, 270, 346, 501
SexAI	ACCWGGT	1 cut(s)	498
SfaAI	GCGATCGC	1 cut(s)	598
SfaNI	GCATC	2 cut(s)	364, 579
SgfI	GCGATCGC	1 cut(s)	598
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	4 cut(s)	26, 75, 107, 417
SsiI	CCGC	2 cut(s)	41, 50
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	45, 498
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	452, 610
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	4 cut(s)	26, 75, 107, 417
Tru1I	TTAA	2 cut(s)	78, 504
Tru9I	TTAA	2 cut(s)	78, 504
TscAI	CASTG	1 cut(s)	607
TseI	GCWGC	2 cut(s)	575, 578
TspDTI	ATGAA	2 cut(s)	257, 453
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	607
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	2 cut(s)	107, 417
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.