Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004611

Physical Location & Seq

Genomic Coordinates Forward (+)

14811089 .. 14812831

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCTTCCCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTACAAGGTAGAAATGATCAATGATGGAATGCATGAGTTCTATGTGGATTTCCATGGACCCACTGACAGTATTTATCAGGGAGGTGTGTGGAGGATAAGAGTTGAGCTACCAGATGCTTATCCCTATAAATCTCCCTCAATAGGCTTTGTCAATAAGATGTACCACCCAAATGTTGATGAGATGTCTGGCTCGGTTTGTTTAGATGTTATCAATCAGACGTGGAGCCCCATGTTTGATCTGGTAAACGTTTTTGAAGTGTTCTTGCCACAGCTTCTCCTGTATCCCAATCCGTCTGACCCTTTAAACGGAGAGGCTGCAGCTTTGATGATGCGTGACCGACCTGCTTATGAACAAAGAGTTAAAGAATTCTGTCTCAAGTATGCCAAGGCTGAGGATATAGGAGCTGCCCCGGAAGAGGAATCAAGTGACGAGGAAATGAGTGATGCTGAATCTGATTCTTGCGACGATCAAGTTGCAGGACAAGCCGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

4.3

Isoelectric Point (pI)

64.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63800 AT1G63800 AT5G41340 AT5G41340
fragaria_vesca	FvH4_5g02750 FvH4_7g14730 FvH4_7g14730
malus_domestica	MD01G1065900.v1.1 MD06G1086900.v1.1 MD07G1134700.v1.1 MD14G1108100.v1.1
prunus_persica	Prupe.2G173000_v2.0.a1 Prupe.2G173000_v2.0.a1 Prupe.5G103400_v2.0.a1
pyrus_communis	pycom01g09550 pycom06g08330 pycom07g13200 pycom14g10280
rosa_chinensis	RchiOBHm_Chr1g0356681 RchiOBHm_Chr7g0197171
rosa_multiflora	Rmu_co8383437.1_g000001 Rmu_sc0012426.1_g000010 Rmu_sc0013188.1_g000009
rosa_roxburghii	Rroxscaffold_3G00258620 Rroxscaffold_4G00299440
rosa_rugosa	Rorug01G0250500 Rorug07G0038200
rosa_samantha	Rh7CG171000 Rh7DG164400
rosa_wichuraiana	Rw1G023390 Rw7G014230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	422
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	197, 362, 472
AgsI	TTSAA	1 cut(s)	311
AjiI	CACGTC	1 cut(s)	276
AluBI	AGCT	4 cut(s)	163, 328, 377, 461
AluI	AGCT	4 cut(s)	163, 328, 377, 461
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	371, 374, 461
ApoI	RAATTY	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	467
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	358, 386, 448
BccI	CCATC	2 cut(s)	22, 74
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciVI	GTATCC	1 cut(s)	348
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	434
BfmI	CTRYAG	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	348
BisI	GCNGC	3 cut(s)	372, 375, 462
BlsI	GCNGC	3 cut(s)	373, 376, 463
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	115, 281
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	3 cut(s)	160, 375, 490
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	109, 441, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 362, 472
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	109, 441, 465
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	197, 362, 472
BseMII	CTCAG	1 cut(s)	438
BseXI	GCAGC	3 cut(s)	358, 386, 448
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	3 cut(s)	197, 362, 472
BsmAI	GTCTC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	4 cut(s)	72, 292, 523, 544
Bsp19I	CCATGG	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	2 cut(s)	115, 281
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	539
BssECI	CCNNGG	3 cut(s)	109, 441, 465
BssMI	GATC	4 cut(s)	72, 292, 523, 544
BssT1I	CCWWGG	2 cut(s)	109, 441
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	109
BstKTI	GATC	4 cut(s)	75, 295, 526, 547
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	72, 292, 523, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	3 cut(s)	358, 386, 448
BsuI	GTATCC	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	3 cut(s)	89, 110, 286
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	4 cut(s)	74, 294, 525, 546
DpnII	GATC	4 cut(s)	72, 292, 523, 544
DraI	TTTAAA	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	109, 441
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	422
EcoT14I	CCWWGG	2 cut(s)	109, 441
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	2 cut(s)	109, 441
FaeI	CATG	3 cut(s)	92, 113, 289
FaiI	YATR	9 cut(s)	90, 99, 111, 183, 287, 405, 438, 455, 550
FatI	CATG	3 cut(s)	88, 109, 285
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	372, 375, 462
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	372, 375, 462
GluI	GCNGC	3 cut(s)	372, 375, 462
HapII	CCGG	1 cut(s)	467
Hin1II	CATG	3 cut(s)	92, 113, 289
HinfI	GANTC	3 cut(s)	476, 506, 512
HpaII	CCGG	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	273, 352, 511
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	1 cut(s)	524
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	275, 303
HpyCH4V	TGCA	3 cut(s)	88, 374, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	275, 303
Hsp92II	CATG	3 cut(s)	92, 113, 289
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	72, 292, 523, 544
LmnI	GCTCC	2 cut(s)	279, 458
LpnPI	CCDG	8 cut(s)	119, 180, 228, 281, 347, 411, 480, 519
Lsp1109I	GCAGC	3 cut(s)	358, 386, 448
LweI	GCATC	3 cut(s)	160, 375, 490
MaeII	ACGT	2 cut(s)	275, 303
MaeIII	GTNAC	2 cut(s)	389, 482
MalI	GATC	4 cut(s)	74, 294, 525, 546
MboI	GATC	4 cut(s)	72, 292, 523, 544
MboII	GAAGA	1 cut(s)	482
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	1 cut(s)	422
MnlI	CCTC	7 cut(s)	131, 141, 202, 361, 442, 466, 481
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	2 cut(s)	359, 417
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	72, 292, 523, 544
NlaIII	CATG	3 cut(s)	92, 113, 289
NlaIV	GGNNCC	2 cut(s)	115, 281
NmuCI	GTSAC	2 cut(s)	389, 482
NsiI	ATGCAT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	476, 506, 512
PkrI	GCNGC	3 cut(s)	373, 376, 463
Psp1406I	AACGTT	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	115, 281
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	359, 417
SatI	GCNGC	3 cut(s)	372, 375, 462
Sau3AI	GATC	4 cut(s)	72, 292, 523, 544
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	9 cut(s)	66, 142, 165, 278, 306, 330, 379, 400, 463
SfaNI	GCATC	3 cut(s)	160, 375, 490
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	2 cut(s)	109, 441
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	278, 306
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	1 cut(s)	422
TfiI	GAWTC	3 cut(s)	476, 506, 512
Tru1I	TTAA	2 cut(s)	359, 417
Tru9I	TTAA	2 cut(s)	359, 417
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	389, 482
TseI	GCWGC	3 cut(s)	371, 374, 461
Tsp45I	GTSAC	2 cut(s)	389, 482
TspDTI	ATGAA	2 cut(s)	53, 420
TspGWI	ACGGA	2 cut(s)	336, 378
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.